Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00037 * 2 1 4 4 H 1.08003 * 120.00426 * 202.35577 * 3 2 1 5 5 C 1.38819 * 120.00003 * 22.35910 * 3 2 1 6 6 N 1.31617 * 119.99606 * 11.42550 * 5 3 2 7 7 Si 1.86795 * 120.00039 * 191.42480 * 5 3 2 8 8 H 1.48501 * 109.47374 * 60.00106 * 7 5 3 9 9 H 1.48496 * 109.47158 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47100 * 299.99877 * 7 5 3 11 11 C 1.46498 * 120.00009 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.46854 * 269.99766 * 11 2 1 13 13 O 1.21278 * 120.00155 * 359.97438 * 12 11 2 14 14 N 1.34781 * 120.00263 * 180.02562 * 12 11 2 15 15 C 1.46504 * 120.00156 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47008 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47329 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47329 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47076 * 65.00308 * 18 17 16 20 20 C 1.53003 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46817 * 299.99936 * 20 19 18 22 22 C 1.53000 * 109.47472 * 60.00380 * 21 20 19 23 23 C 1.53003 * 109.46790 * 299.99637 * 22 21 20 24 24 H 1.08994 * 109.46812 * 274.11636 * 1 2 3 25 25 H 1.08997 * 109.47074 * 34.11989 * 1 2 3 26 26 H 1.09003 * 109.47141 * 154.11547 * 1 2 3 27 27 H 0.96999 * 119.99900 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.47602 * 149.99788 * 11 2 1 29 29 H 1.09003 * 109.47443 * 29.99391 * 11 2 1 30 30 H 0.97003 * 119.99713 * 359.97438 * 14 12 11 31 31 H 1.09003 * 109.46978 * 59.99654 * 15 14 12 32 32 H 1.08993 * 109.46900 * 299.99995 * 15 14 12 33 33 H 1.09003 * 109.47377 * 60.00090 * 16 15 14 34 34 H 1.09003 * 109.47440 * 300.00409 * 16 15 14 35 35 H 1.09003 * 109.46765 * 59.99779 * 17 16 15 36 36 H 1.09003 * 109.47246 * 300.00592 * 17 16 15 37 37 H 1.09000 * 109.47443 * 305.00197 * 18 17 16 38 38 H 1.08996 * 109.46999 * 299.99511 * 19 18 17 39 39 H 1.09000 * 109.47076 * 59.99663 * 19 18 17 40 40 H 1.08996 * 109.46954 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.47324 * 59.99372 * 20 19 18 42 42 H 1.09000 * 109.47437 * 299.99631 * 21 20 19 43 43 H 1.09003 * 109.46725 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.47246 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.47401 * 59.99229 * 22 21 20 46 46 H 1.08999 * 109.47324 * 300.00526 * 23 22 21 47 47 H 1.09000 * 109.47411 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5339 2.3429 0.4573 6 7 0.3851 2.2687 1.0955 7 14 2.3356 4.0049 0.1671 8 1 2.4884 4.2327 -1.2924 9 1 1.4836 5.0736 0.7478 10 1 3.6718 4.0297 0.8145 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0551 -1.0219 2.3422 14 7 3.1117 -2.8517 1.6660 15 6 3.3564 -3.2748 3.0471 16 6 4.1212 -4.5999 3.0465 17 6 4.3774 -5.0415 4.4888 18 6 5.1428 -6.3662 4.4883 19 6 6.5296 -6.1537 3.8778 20 6 7.2953 -7.4783 3.8779 21 6 7.4424 -7.9822 5.3151 22 6 6.0557 -8.1948 5.9256 23 6 5.2900 -6.8702 5.9255 24 1 -0.3633 0.0738 1.0250 25 1 -0.3633 0.8507 -0.5764 26 1 -0.3633 -0.9246 -0.4486 27 1 -0.0454 3.0772 1.4147 28 1 3.1500 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5146 30 1 3.4269 -3.3973 0.9284 31 1 2.4041 -3.4056 3.5611 32 1 3.9453 -2.5151 3.5608 33 1 5.0735 -4.4696 2.5324 34 1 3.5320 -5.3594 2.5327 35 1 3.4253 -5.1717 5.0034 36 1 4.9668 -4.2819 5.0022 37 1 4.5953 -7.1020 3.8992 38 1 6.4247 -5.7943 2.8542 39 1 7.0770 -5.4179 4.4669 40 1 8.2830 -7.3270 3.4426 41 1 6.7480 -8.2145 3.2891 42 1 7.9898 -7.2462 5.9039 43 1 7.9883 -8.9257 5.3151 44 1 6.1606 -8.5533 6.9495 45 1 5.5084 -8.9308 5.3367 46 1 5.8373 -6.1341 6.5143 47 1 4.3022 -7.0214 6.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -50.592400 kcal Electronic energy + Delta-G solvation = -22100.175930 eV Core-core repulsion = 18896.147963 eV Total energy + Delta-G solvation = -3204.027966 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.23293 -38.61879 -35.67361 -34.79388 -33.16720 -31.21281 -31.05208 -29.97655 -27.25944 -25.76422 -25.12504 -23.09569 -22.17331 -21.25991 -20.87892 -19.98490 -19.40425 -16.70979 -16.23267 -15.79473 -15.69093 -15.26110 -14.60080 -14.55550 -14.46216 -14.19190 -13.87016 -13.29020 -13.24375 -13.00423 -12.74692 -12.51712 -12.38364 -12.06612 -11.67626 -11.60821 -11.43113 -11.35616 -11.17339 -11.06118 -10.79056 -10.77455 -10.67431 -10.58994 -10.29601 -10.24405 -10.15449 -9.97011 -9.81635 -8.92772 -8.42318 -8.38813 -6.68085 -5.61627 -3.08246 3.45102 3.49582 3.50970 3.69586 3.83429 4.37956 4.42672 4.47392 4.58324 4.81042 4.88149 4.95697 5.05559 5.17137 5.22086 5.24917 5.32725 5.37981 5.43454 5.54393 5.64398 5.65339 5.66416 5.70214 5.75016 5.82432 5.86588 5.89291 5.96398 6.00903 6.01543 6.09091 6.18721 6.24269 6.28435 6.33649 6.37845 6.80482 7.10012 7.45807 7.82816 7.92350 8.22345 8.48434 9.23065 9.32375 9.92971 10.40663 11.43255 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.002507 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.294707 B =11167.927360 C =11342.898801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.574 5.574 3 C -0.258 4.258 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.898 5.898 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.132 3.868 12 C 0.467 3.533 13 O -0.510 6.510 14 N -0.752 5.752 15 C 0.119 3.881 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.085 4.085 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.033 0.967 25 H 0.048 0.952 26 H -0.005 1.005 27 H 0.252 0.748 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.390 0.610 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.590 -22.416 5.277 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.294 5.294 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.541 5.541 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.000 4.000 12 C 0.251 3.749 13 O -0.382 6.382 14 N -0.409 5.409 15 C -0.006 4.006 16 C -0.167 4.167 17 C -0.151 4.151 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.222 0.778 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.109 -21.672 6.019 25.086 hybrid contribution 0.626 0.592 -0.108 0.868 sum 11.735 -21.079 5.911 24.839 Atomic orbital electron populations 1.20848 0.81961 0.95468 0.99741 1.43846 1.02096 0.99796 1.83670 1.19101 0.98242 0.84946 1.36499 0.91391 1.25091 0.97723 0.98616 0.97778 1.70090 1.17698 1.27004 1.39315 0.86318 0.78591 0.83731 0.77721 1.21007 1.21615 1.20985 1.20998 0.97883 0.90331 0.90816 1.23608 0.76646 0.79192 0.95454 1.90697 1.48621 1.52449 1.46388 1.46577 1.61270 1.25839 1.07199 1.21187 0.99335 0.94939 0.85105 1.21829 1.00551 0.96774 0.97502 1.21562 1.00404 0.96713 0.96431 1.21161 0.95969 0.96997 0.96257 1.21655 0.95483 0.97158 1.01151 1.21540 1.00122 0.97475 0.96632 1.21541 0.97021 1.00783 0.96427 1.21531 0.96075 0.97604 1.00497 1.21597 1.00188 0.96918 0.96616 0.94870 0.93301 0.98607 0.93760 0.91020 0.91632 0.77751 0.92536 0.92451 0.91340 0.91652 0.91694 0.91688 0.91266 0.91619 0.92001 0.92212 0.92136 0.92106 0.92370 0.92263 0.92121 0.91983 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.31 9.01 59.85 0.54 4.85 16 2 N -0.57 -15.30 2.41 -182.50 -0.44 -15.74 16 3 C -0.26 -7.48 9.67 -15.06 -0.15 -7.62 16 4 H 0.07 1.89 7.84 -52.48 -0.41 1.48 16 5 C 0.01 0.21 5.13 -17.43 -0.09 0.12 16 6 N -0.90 -27.86 10.59 55.49 0.59 -27.28 16 7 Si 0.91 22.82 29.57 -169.99 -5.03 17.80 16 8 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 C 0.13 2.77 6.19 -5.19 -0.03 2.74 16 12 C 0.47 10.06 7.90 -10.98 -0.09 9.97 16 13 O -0.51 -14.03 16.43 5.56 0.09 -13.94 16 14 N -0.75 -11.81 5.56 -60.30 -0.33 -12.14 16 15 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 16 C -0.13 -1.27 5.08 -26.74 -0.14 -1.41 16 17 C -0.11 -1.02 4.68 -26.74 -0.13 -1.14 16 18 C -0.09 -0.66 2.19 -90.62 -0.20 -0.86 16 19 C -0.12 -0.88 4.96 -26.73 -0.13 -1.02 16 20 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.12 -0.85 5.20 -26.72 -0.14 -0.99 16 24 H 0.03 0.97 7.42 -51.93 -0.39 0.59 16 25 H 0.05 1.34 7.18 -51.93 -0.37 0.97 16 26 H 0.00 -0.10 7.85 -51.93 -0.41 -0.51 16 27 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 29 H 0.07 1.16 7.86 -51.93 -0.41 0.75 16 30 H 0.39 4.67 8.47 -40.82 -0.35 4.33 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.50 6.56 -51.93 -0.34 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -35.13 367.57 -9.53 -44.67 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.91 Total: -2.36 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.04 Total: 3.46 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.19 Total: -55.16 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.94 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.13 -9.53 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.924 kcal (2) G-P(sol) polarization free energy of solvation -35.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds