Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 120.00037 * 2 1 4 4 H 1.08003 * 120.00426 * 202.35577 * 3 2 1 5 5 C 1.38819 * 120.00003 * 22.35910 * 3 2 1 6 6 N 1.31617 * 119.99606 * 11.42550 * 5 3 2 7 7 Si 1.86795 * 120.00039 * 191.42480 * 5 3 2 8 8 H 1.48501 * 109.47374 * 60.00106 * 7 5 3 9 9 H 1.48496 * 109.47158 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47100 * 299.99877 * 7 5 3 11 11 C 1.46498 * 120.00009 * 180.02562 * 2 1 3 12 12 C 1.50699 * 109.46854 * 269.99766 * 11 2 1 13 13 O 1.21278 * 120.00155 * 359.97438 * 12 11 2 14 14 N 1.34781 * 120.00263 * 180.02562 * 12 11 2 15 15 C 1.46504 * 120.00156 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47008 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47329 * 179.97438 * 16 15 14 18 18 C 1.52993 * 109.47329 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.47076 * 65.00308 * 18 17 16 20 20 C 1.53003 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.46817 * 299.99936 * 20 19 18 22 22 C 1.53000 * 109.47472 * 60.00380 * 21 20 19 23 23 C 1.53003 * 109.46790 * 299.99637 * 22 21 20 24 24 H 1.08994 * 109.46812 * 274.11636 * 1 2 3 25 25 H 1.08997 * 109.47074 * 34.11989 * 1 2 3 26 26 H 1.09003 * 109.47141 * 154.11547 * 1 2 3 27 27 H 0.96999 * 119.99900 * 180.02562 * 6 5 3 28 28 H 1.09003 * 109.47602 * 149.99788 * 11 2 1 29 29 H 1.09003 * 109.47443 * 29.99391 * 11 2 1 30 30 H 0.97003 * 119.99713 * 359.97438 * 14 12 11 31 31 H 1.09003 * 109.46978 * 59.99654 * 15 14 12 32 32 H 1.08993 * 109.46900 * 299.99995 * 15 14 12 33 33 H 1.09003 * 109.47377 * 60.00090 * 16 15 14 34 34 H 1.09003 * 109.47440 * 300.00409 * 16 15 14 35 35 H 1.09003 * 109.46765 * 59.99779 * 17 16 15 36 36 H 1.09003 * 109.47246 * 300.00592 * 17 16 15 37 37 H 1.09000 * 109.47443 * 305.00197 * 18 17 16 38 38 H 1.08996 * 109.46999 * 299.99511 * 19 18 17 39 39 H 1.09000 * 109.47076 * 59.99663 * 19 18 17 40 40 H 1.08996 * 109.46954 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.47324 * 59.99372 * 20 19 18 42 42 H 1.09000 * 109.47437 * 299.99631 * 21 20 19 43 43 H 1.09003 * 109.46725 * 180.02562 * 21 20 19 44 44 H 1.08996 * 109.47246 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.47401 * 59.99229 * 22 21 20 46 46 H 1.08999 * 109.47324 * 300.00526 * 23 22 21 47 47 H 1.09000 * 109.47411 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3557 5 6 1.5339 2.3429 0.4573 6 7 0.3851 2.2687 1.0955 7 14 2.3356 4.0049 0.1671 8 1 2.4884 4.2327 -1.2924 9 1 1.4836 5.0736 0.7478 10 1 3.6718 4.0297 0.8145 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0551 -1.0219 2.3422 14 7 3.1117 -2.8517 1.6660 15 6 3.3564 -3.2748 3.0471 16 6 4.1212 -4.5999 3.0465 17 6 4.3774 -5.0415 4.4888 18 6 5.1428 -6.3662 4.4883 19 6 6.5296 -6.1537 3.8778 20 6 7.2953 -7.4783 3.8779 21 6 7.4424 -7.9822 5.3151 22 6 6.0557 -8.1948 5.9256 23 6 5.2900 -6.8702 5.9255 24 1 -0.3633 0.0738 1.0250 25 1 -0.3633 0.8507 -0.5764 26 1 -0.3633 -0.9246 -0.4486 27 1 -0.0454 3.0772 1.4147 28 1 3.1500 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5146 30 1 3.4269 -3.3973 0.9284 31 1 2.4041 -3.4056 3.5611 32 1 3.9453 -2.5151 3.5608 33 1 5.0735 -4.4696 2.5324 34 1 3.5320 -5.3594 2.5327 35 1 3.4253 -5.1717 5.0034 36 1 4.9668 -4.2819 5.0022 37 1 4.5953 -7.1020 3.8992 38 1 6.4247 -5.7943 2.8542 39 1 7.0770 -5.4179 4.4669 40 1 8.2830 -7.3270 3.4426 41 1 6.7480 -8.2145 3.2891 42 1 7.9898 -7.2462 5.9039 43 1 7.9883 -8.9257 5.3151 44 1 6.1606 -8.5533 6.9495 45 1 5.5084 -8.9308 5.3367 46 1 5.8373 -6.1341 6.5143 47 1 4.3022 -7.0214 6.3608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075828530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -72.578094 kcal Electronic energy + Delta-G solvation = -22101.129301 eV Core-core repulsion = 18896.147963 eV Total energy + Delta-G solvation = -3204.981337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45540 -39.69694 -37.22912 -36.39305 -34.30298 -33.27047 -31.62473 -31.01669 -28.86390 -27.87113 -26.24590 -23.90313 -23.43741 -22.62756 -21.74983 -20.91621 -20.55855 -18.80521 -17.80172 -17.14532 -16.72896 -16.54374 -16.10035 -15.81254 -15.33569 -15.06677 -14.98010 -14.79876 -14.62475 -14.58378 -13.87578 -13.67357 -13.45824 -13.14912 -13.02356 -12.84169 -12.75126 -12.55868 -12.38029 -12.27021 -12.17057 -12.05391 -11.94438 -11.89205 -11.82961 -11.55184 -11.26997 -10.94515 -10.80568 -10.72967 -10.48747 -9.89602 -8.79528 -7.80479 -5.29961 1.44547 1.48505 1.54789 1.99543 2.42315 2.54964 3.36577 3.70992 3.74063 3.82223 3.88466 4.09448 4.11745 4.24596 4.35215 4.38049 4.51152 4.62692 4.64134 4.66876 4.67691 4.69963 4.74229 4.76275 4.81690 4.84909 4.88804 5.02325 5.11645 5.17878 5.23044 5.30799 5.30885 5.31668 5.39231 5.40484 5.46449 5.55920 5.61226 5.67305 5.70573 5.75605 6.30201 6.84406 7.14755 7.62836 7.87194 8.27653 9.23485 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.002507 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.294707 B =11167.927360 C =11342.898801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.595 5.595 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.059 4.059 6 N -0.937 5.937 7 Si 0.974 3.026 8 H -0.267 1.267 9 H -0.296 1.296 10 H -0.280 1.280 11 C 0.127 3.873 12 C 0.468 3.532 13 O -0.580 6.580 14 N -0.726 5.726 15 C 0.119 3.881 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.079 4.079 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.117 4.117 24 H -0.010 1.010 25 H 0.025 0.975 26 H 0.037 0.963 27 H 0.245 0.755 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.414 0.586 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.373 -24.522 3.998 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.316 5.316 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.253 4.253 6 N -0.582 5.582 7 Si 0.802 3.198 8 H -0.193 1.193 9 H -0.223 1.223 10 H -0.206 1.206 11 C -0.004 4.004 12 C 0.253 3.747 13 O -0.458 6.458 14 N -0.382 5.382 15 C -0.005 4.005 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.098 4.098 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.008 0.992 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.250 0.750 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.958 -23.874 4.695 27.567 hybrid contribution 0.131 1.081 0.293 1.128 sum 13.090 -22.794 4.988 26.754 Atomic orbital electron populations 1.20556 0.82493 0.96477 0.97083 1.44039 1.02291 1.01237 1.84015 1.19533 0.98488 0.86209 1.35244 0.90512 1.25973 0.98580 1.02492 0.98300 1.70310 1.19446 1.27271 1.41218 0.85251 0.77321 0.79022 0.78250 1.19277 1.22272 1.20615 1.21279 0.99259 0.89099 0.90741 1.23460 0.76388 0.79945 0.94897 1.90690 1.51875 1.55040 1.48160 1.46180 1.58982 1.24162 1.08878 1.21271 0.98909 0.96733 0.83616 1.21735 1.00592 0.94298 0.98448 1.21542 1.00375 0.97338 0.95709 1.21100 0.95931 0.96104 0.96625 1.21655 0.95289 0.97488 1.01037 1.21535 1.00246 0.97059 0.96825 1.21550 0.96981 1.01061 0.96238 1.21524 0.96029 0.97119 1.00901 1.21598 1.00269 0.97258 0.96294 0.99176 0.95609 0.94427 0.94595 0.88493 0.87565 0.74955 0.94117 0.94521 0.90033 0.89965 0.92064 0.92491 0.90739 0.91394 0.92737 0.91862 0.91761 0.92522 0.91607 0.91833 0.91812 0.92568 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.49 9.01 127.77 1.15 10.64 16 2 N -0.60 -31.41 2.41 -731.30 -1.76 -33.17 16 3 C -0.26 -15.28 9.67 84.04 0.81 -14.46 16 4 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 5 C -0.06 -3.51 5.13 84.86 0.44 -3.07 16 6 N -0.94 -60.17 10.59 21.65 0.23 -59.94 16 7 Si 0.97 47.55 29.57 68.60 2.03 49.58 16 8 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 9 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.13 5.00 6.19 85.63 0.53 5.53 16 12 C 0.47 19.66 7.90 87.66 0.69 20.35 16 13 O -0.58 -32.61 16.43 -3.02 -0.05 -32.66 16 14 N -0.73 -21.23 5.56 -463.07 -2.57 -23.80 16 15 C 0.12 3.30 5.67 86.38 0.49 3.79 16 16 C -0.11 -1.96 5.08 30.59 0.16 -1.80 16 17 C -0.11 -1.84 4.68 30.59 0.14 -1.70 16 18 C -0.08 -1.07 2.19 -10.79 -0.02 -1.09 16 19 C -0.12 -1.53 4.96 30.60 0.15 -1.38 16 20 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 21 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 22 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 23 C -0.12 -1.55 5.20 30.60 0.16 -1.39 16 24 H -0.01 -0.63 7.42 -2.39 -0.02 -0.64 16 25 H 0.03 1.43 7.18 -2.39 -0.02 1.42 16 26 H 0.04 1.63 7.85 -2.39 -0.02 1.61 16 27 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.10 3.34 8.03 -2.39 -0.02 3.32 16 29 H 0.11 3.32 7.86 -2.39 -0.02 3.30 16 30 H 0.41 8.34 8.47 -92.71 -0.79 7.55 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.25 6.56 -2.39 -0.02 1.23 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.85 6.56 -2.39 -0.02 0.84 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -79.16 367.57 3.24 -75.92 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.13 Total: 12.20 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.24 Total: 11.86 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -4.11 Total: -116.91 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -79.16 3.24 -75.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.346 kcal (2) G-P(sol) polarization free energy of solvation -79.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds