Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46783 * 2 1 4 4 C 1.46493 * 120.00408 * 269.99788 * 3 2 1 5 5 C 1.50701 * 109.47270 * 270.00454 * 4 3 2 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00586 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00588 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47034 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47553 * 119.99855 * 9 7 5 12 12 H 1.48500 * 109.47452 * 240.00030 * 9 7 5 13 13 C 1.34787 * 119.99919 * 89.99899 * 3 2 1 14 14 O 1.21282 * 119.99509 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00049 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47339 * 179.97438 * 15 13 3 17 17 C 1.46909 * 110.99586 * 66.04446 * 16 15 13 18 18 C 1.46896 * 111.00239 * 189.99735 * 16 15 13 19 19 C 1.52997 * 109.46848 * 60.00318 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47053 * 180.02562 * 18 16 15 24 24 H 1.09002 * 109.46591 * 60.00201 * 1 2 3 25 25 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47010 * 300.00101 * 1 2 3 27 27 H 1.08996 * 109.47010 * 239.99899 * 2 1 3 28 28 H 1.09001 * 109.47097 * 119.99649 * 2 1 3 29 29 H 1.09004 * 109.47147 * 30.00070 * 4 3 2 30 30 H 1.09000 * 109.47621 * 150.00384 * 4 3 2 31 31 H 0.97000 * 120.00050 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47130 * 60.00007 * 15 13 3 33 33 H 1.09001 * 109.47415 * 299.99964 * 15 13 3 34 34 H 1.08992 * 109.46818 * 183.95363 * 17 16 15 35 35 H 1.08995 * 109.47231 * 303.95397 * 17 16 15 36 36 H 1.09001 * 109.46905 * 63.95568 * 17 16 15 37 37 H 1.09002 * 109.47220 * 300.00387 * 18 16 15 38 38 H 1.08996 * 109.47853 * 300.00000 * 19 18 16 39 39 H 1.09002 * 109.47153 * 60.00028 * 19 18 16 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00238 * 23 18 16 47 47 H 1.09004 * 109.46724 * 60.00724 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8778 8 7 3.3492 3.1259 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9216 1.4173 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9912 1.3064 2.4724 16 7 2.3100 2.2061 3.5889 17 6 1.3842 3.3462 3.6272 18 6 2.3058 1.4815 4.8667 19 6 3.3506 0.3647 4.8230 20 6 3.3467 -0.3898 6.1541 21 6 3.6823 0.5786 7.2901 22 6 2.6375 1.6954 7.3338 23 6 2.6406 2.4496 6.0032 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6751 3.5158 -4.4442 32 1 2.6211 0.4187 2.5303 33 1 0.9431 1.0126 2.5299 34 1 1.6851 4.0321 4.4189 35 1 1.4070 3.8650 2.6689 36 1 0.3736 2.9871 3.8220 37 1 1.3193 1.0498 5.0364 38 1 3.1117 -0.3250 4.0135 39 1 4.3370 0.7963 4.6534 40 1 4.0913 -1.1852 6.1231 41 1 2.3603 -0.8214 6.3241 42 1 4.6687 1.0102 7.1201 43 1 3.6791 0.0411 8.2384 44 1 2.8764 2.3849 8.1434 45 1 1.6512 1.2637 7.5038 46 1 3.6268 2.8816 5.8338 47 1 1.8959 3.2450 6.0341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076426390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -44.399017 kcal Electronic energy + Delta-G solvation = -23490.341237 eV Core-core repulsion = 20286.581836 eV Total energy + Delta-G solvation = -3203.759401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72950 -38.51625 -35.73300 -34.94422 -32.75868 -31.12188 -30.11494 -29.72776 -28.36777 -26.57751 -24.49913 -22.98856 -22.69996 -22.14124 -20.93057 -19.72257 -18.21688 -16.89846 -16.32207 -15.63403 -15.57568 -15.16785 -14.55889 -14.38917 -14.31070 -14.09438 -13.82330 -13.47536 -13.31753 -13.12550 -12.60815 -12.40903 -12.34595 -12.07912 -11.91509 -11.60725 -11.45902 -11.36712 -11.21529 -11.16600 -11.02395 -10.85213 -10.70356 -10.65350 -10.50988 -10.35859 -10.07912 -9.98643 -9.55165 -8.78253 -8.39653 -8.05165 -7.57251 -6.00223 -4.04350 3.32713 3.40148 3.43751 3.52717 3.70219 4.24522 4.49525 4.58010 4.62027 4.84843 5.07794 5.11980 5.15573 5.29667 5.31937 5.33794 5.35125 5.40538 5.45144 5.46417 5.59004 5.64230 5.65959 5.73288 5.77990 5.82163 5.89088 5.96759 6.02910 6.05422 6.10711 6.11995 6.16801 6.24926 6.34438 6.43566 6.49083 7.03032 7.22517 7.29992 7.50229 7.62855 7.97245 8.28918 8.50787 8.96600 9.21159 9.60912 11.07855 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.004061 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.888235 B = 6893.579570 C = 7247.190395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.033 3.967 16 N -0.519 5.519 17 C 0.019 3.981 18 C 0.088 3.912 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.114 4.114 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.014 0.986 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -7.990 19.041 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.098 4.098 16 N -0.243 5.243 17 C -0.129 4.129 18 C -0.021 4.021 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.152 4.152 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.562 -7.072 18.765 20.566 hybrid contribution 0.086 -0.575 -0.357 0.682 sum -4.476 -7.646 18.408 20.430 Atomic orbital electron populations 1.22222 0.96971 1.01302 1.02201 1.21383 0.93358 0.84452 1.02521 1.48261 1.64187 1.13182 1.07715 1.19232 0.96186 0.93579 0.78139 1.21492 0.96963 1.31638 1.06068 0.92429 1.24934 0.97804 0.94977 0.96447 1.69947 1.35584 1.33668 1.14337 0.86453 0.84756 0.78045 0.78229 1.19802 1.21045 1.20901 1.20151 0.78741 0.87124 0.84717 1.90629 1.44674 1.17906 1.86780 1.22145 1.00107 0.96574 0.90931 1.61642 1.52302 1.08919 1.01423 1.22579 0.91942 0.93743 1.04620 1.21638 0.97282 0.93955 0.89183 1.21672 1.00217 0.96665 0.96928 1.21516 1.01459 0.97816 0.94678 1.21552 0.99332 0.96728 0.98173 1.21511 0.99197 0.97557 0.97222 1.21630 1.02832 0.97615 0.93103 0.92021 0.92245 0.93297 0.89968 0.91998 0.95170 0.93995 0.92855 0.88321 0.92932 0.91433 0.89049 0.96792 0.94658 0.91867 0.90758 0.91860 0.92259 0.91792 0.92303 0.91954 0.92304 0.90871 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 4 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 5 C -0.52 -15.03 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.51 10.75 7.37 -10.98 -0.08 10.67 16 14 O -0.52 -13.37 13.91 5.56 0.08 -13.29 16 15 C 0.03 0.53 3.82 -4.98 -0.02 0.51 16 16 N -0.52 -8.03 4.37 -236.33 -1.03 -9.06 16 17 C 0.02 0.28 8.75 60.07 0.53 0.81 16 18 C 0.09 1.05 1.95 -67.72 -0.13 0.92 16 19 C -0.12 -1.31 5.00 -26.73 -0.13 -1.44 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -1.01 5.92 -26.75 -0.16 -1.16 16 23 C -0.11 -1.22 4.84 -26.75 -0.13 -1.35 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.10 1.43 5.09 -51.93 -0.26 1.17 16 33 H 0.05 0.74 7.16 -51.93 -0.37 0.37 16 34 H 0.07 0.91 6.23 -51.93 -0.32 0.59 16 35 H 0.09 1.68 5.82 -51.93 -0.30 1.38 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.70 6.20 -51.93 -0.32 0.38 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.68 6.35 -51.93 -0.33 0.35 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -32.66 358.44 -9.27 -41.93 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.46 Total: -1.93 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.54 Total: -0.79 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.73 Total: -48.50 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.66 -9.27 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076426390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.471 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds