Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46783 * 2 1 4 4 C 1.46493 * 120.00408 * 269.99788 * 3 2 1 5 5 C 1.50701 * 109.47270 * 270.00454 * 4 3 2 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00586 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99785 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00588 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47034 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47553 * 119.99855 * 9 7 5 12 12 H 1.48500 * 109.47452 * 240.00030 * 9 7 5 13 13 C 1.34787 * 119.99919 * 89.99899 * 3 2 1 14 14 O 1.21282 * 119.99509 * 179.97438 * 13 3 2 15 15 C 1.50694 * 120.00049 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47339 * 179.97438 * 15 13 3 17 17 C 1.46909 * 110.99586 * 66.04446 * 16 15 13 18 18 C 1.46896 * 111.00239 * 189.99735 * 16 15 13 19 19 C 1.52997 * 109.46848 * 60.00318 * 18 16 15 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47053 * 180.02562 * 18 16 15 24 24 H 1.09002 * 109.46591 * 60.00201 * 1 2 3 25 25 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47010 * 300.00101 * 1 2 3 27 27 H 1.08996 * 109.47010 * 239.99899 * 2 1 3 28 28 H 1.09001 * 109.47097 * 119.99649 * 2 1 3 29 29 H 1.09004 * 109.47147 * 30.00070 * 4 3 2 30 30 H 1.09000 * 109.47621 * 150.00384 * 4 3 2 31 31 H 0.97000 * 120.00050 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47130 * 60.00007 * 15 13 3 33 33 H 1.09001 * 109.47415 * 299.99964 * 15 13 3 34 34 H 1.08992 * 109.46818 * 183.95363 * 17 16 15 35 35 H 1.08995 * 109.47231 * 303.95397 * 17 16 15 36 36 H 1.09001 * 109.46905 * 63.95568 * 17 16 15 37 37 H 1.09002 * 109.47220 * 300.00387 * 18 16 15 38 38 H 1.08996 * 109.47853 * 300.00000 * 19 18 16 39 39 H 1.09002 * 109.47153 * 60.00028 * 19 18 16 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00238 * 23 18 16 47 47 H 1.09004 * 109.46724 * 60.00724 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1492 2.3897 -2.8778 8 7 3.3492 3.1259 -3.6180 9 14 5.9136 2.0968 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9216 1.4173 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2429 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9912 1.3064 2.4724 16 7 2.3100 2.2061 3.5889 17 6 1.3842 3.3462 3.6272 18 6 2.3058 1.4815 4.8667 19 6 3.3506 0.3647 4.8230 20 6 3.3467 -0.3898 6.1541 21 6 3.6823 0.5786 7.2901 22 6 2.6375 1.6954 7.3338 23 6 2.6406 2.4496 6.0032 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1383 31 1 3.6751 3.5158 -4.4442 32 1 2.6211 0.4187 2.5303 33 1 0.9431 1.0126 2.5299 34 1 1.6851 4.0321 4.4189 35 1 1.4070 3.8650 2.6689 36 1 0.3736 2.9871 3.8220 37 1 1.3193 1.0498 5.0364 38 1 3.1117 -0.3250 4.0135 39 1 4.3370 0.7963 4.6534 40 1 4.0913 -1.1852 6.1231 41 1 2.3603 -0.8214 6.3241 42 1 4.6687 1.0102 7.1201 43 1 3.6791 0.0411 8.2384 44 1 2.8764 2.3849 8.1434 45 1 1.6512 1.2637 7.5038 46 1 3.6268 2.8816 5.8338 47 1 1.8959 3.2450 6.0341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076426390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = -65.052650 kcal Electronic energy + Delta-G solvation = -23491.236845 eV Core-core repulsion = 20286.581836 eV Total energy + Delta-G solvation = -3204.655010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07153 -39.73956 -37.10021 -36.32520 -34.89370 -31.96945 -31.64075 -30.75000 -29.76243 -28.29201 -25.84191 -24.63719 -23.97461 -23.14606 -21.90010 -20.56679 -19.81912 -18.64043 -18.14084 -17.22628 -16.86202 -16.37691 -16.26707 -15.62686 -15.35904 -15.17602 -14.80998 -14.74057 -14.59895 -14.50018 -14.06571 -13.63893 -13.57344 -13.38691 -13.24795 -13.08488 -12.86851 -12.67994 -12.51863 -12.46549 -12.37978 -12.22092 -12.13716 -11.95703 -11.83595 -11.66627 -11.40590 -11.14422 -10.79975 -10.64598 -10.45494 -9.42366 -9.17841 -8.21952 -6.36604 1.35487 1.38332 1.50135 1.88425 2.24359 2.41244 3.00073 3.07382 3.71162 3.77058 3.84238 4.04286 4.14244 4.21797 4.31579 4.34634 4.37567 4.43904 4.46855 4.53159 4.58872 4.64787 4.65428 4.70307 4.73441 4.93225 4.97564 5.00458 5.05291 5.08003 5.17964 5.20720 5.23905 5.32060 5.32292 5.36876 5.37195 5.40310 5.59606 5.59967 5.87430 6.01228 6.08162 6.23541 6.72096 6.85321 7.29960 7.56476 8.85146 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.004061 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.888235 B = 6893.579570 C = 7247.190395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.050 3.950 16 N -0.544 5.544 17 C 0.025 3.975 18 C 0.090 3.910 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.113 4.113 24 H 0.038 0.962 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.021 0.979 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.033 0.967 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -10.557 21.070 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.459 6.459 15 C -0.080 4.080 16 N -0.269 5.269 17 C -0.122 4.122 18 C -0.018 4.018 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.151 4.151 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.012 0.988 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.683 -9.690 20.816 23.434 hybrid contribution 0.088 0.254 -0.976 1.012 sum -4.595 -9.436 19.841 22.446 Atomic orbital electron populations 1.22144 0.94647 1.03488 1.01484 1.21728 0.95245 0.81479 1.03809 1.48295 1.64272 1.15101 1.06173 1.18650 0.95186 0.91383 0.80444 1.21747 0.97917 1.31832 1.06385 0.93011 1.25859 1.02388 0.94488 0.96454 1.70064 1.37700 1.34347 1.14815 0.85367 0.79037 0.77987 0.78406 1.19176 1.19268 1.20831 1.21204 0.77365 0.86720 0.86278 1.90603 1.47058 1.20493 1.87719 1.22016 1.02018 0.96153 0.87849 1.61595 1.52931 1.09519 1.02835 1.22430 0.93135 0.93939 1.02732 1.21735 0.98280 0.94163 0.87576 1.21680 0.98720 0.96495 0.98593 1.21494 1.02465 0.97737 0.93248 1.21567 0.98732 0.96674 0.98857 1.21487 0.99907 0.97613 0.95942 1.21625 1.01713 0.97717 0.94040 0.94298 0.88501 0.92486 0.90917 0.88441 0.96137 0.98794 0.92453 0.86411 0.90192 0.90314 0.93079 0.94828 0.93186 0.91628 0.92885 0.91087 0.91007 0.92735 0.90600 0.91062 0.91206 0.92759 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.24 71.98 0.74 -3.25 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.40 2.46 -826.16 -2.03 -28.43 16 4 C 0.26 14.71 5.16 85.63 0.44 15.15 16 5 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 9 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.50 21.46 7.37 87.65 0.65 22.10 16 14 O -0.58 -31.18 13.91 -3.04 -0.04 -31.22 16 15 C 0.05 1.51 3.82 85.56 0.33 1.84 16 16 N -0.54 -16.37 4.37 -901.62 -3.94 -20.31 16 17 C 0.03 0.76 8.75 127.69 1.12 1.88 16 18 C 0.09 1.96 1.95 44.92 0.09 2.05 16 19 C -0.12 -2.36 5.00 30.59 0.15 -2.20 16 20 C -0.11 -1.63 5.92 30.60 0.18 -1.45 16 21 C -0.12 -1.69 5.92 30.60 0.18 -1.51 16 22 C -0.11 -1.61 5.92 30.58 0.18 -1.43 16 23 C -0.11 -2.25 4.84 30.58 0.15 -2.10 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 27 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 28 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 29 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 30 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.12 3.10 5.09 -2.38 -0.01 3.09 16 33 H 0.08 1.99 7.16 -2.39 -0.02 1.98 16 34 H 0.08 2.12 6.23 -2.39 -0.01 2.10 16 35 H 0.05 1.96 5.82 -2.39 -0.01 1.95 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.26 6.20 -2.39 -0.01 1.25 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.26 6.35 -2.39 -0.02 1.24 16 Total: -1.00 -75.08 358.44 2.63 -72.45 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.92 Total: 12.81 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.41 Total: 3.76 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -5.68 Total: -105.86 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.04 Total: -31.22 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.08 2.63 -72.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076426390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.398 kcal (2) G-P(sol) polarization free energy of solvation -75.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds