Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47148 * 2 1 4 4 C 1.46498 * 120.00041 * 270.00014 * 3 2 1 5 5 C 1.50697 * 109.47074 * 269.99735 * 4 3 2 6 6 H 1.08003 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00328 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47010 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46707 * 120.00150 * 9 7 5 12 12 H 1.48501 * 109.47297 * 240.00342 * 9 7 5 13 13 C 1.34783 * 119.99947 * 90.00088 * 3 2 1 14 14 O 1.21279 * 119.99881 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99968 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.46857 * 186.25752 * 15 13 3 17 17 C 1.46850 * 110.99773 * 190.60174 * 16 15 13 18 18 C 1.53043 * 109.57877 * 174.19336 * 17 16 15 19 19 H 1.08998 * 109.44942 * 299.17675 * 18 17 16 20 20 C 1.52997 * 109.56102 * 179.05053 * 18 17 16 21 21 C 1.53124 * 109.27592 * 59.07700 * 18 17 16 22 22 C 1.53119 * 109.21268 * 302.44842 * 21 18 17 23 23 H 1.08999 * 109.50214 * 297.63682 * 22 21 18 24 24 C 1.53004 * 109.49758 * 177.56126 * 22 21 18 25 25 C 1.46845 * 111.00476 * 66.39108 * 16 15 13 26 26 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47727 * 299.99750 * 1 2 3 28 28 H 1.08998 * 109.47484 * 60.00175 * 1 2 3 29 29 H 1.08998 * 109.47481 * 239.99812 * 2 1 3 30 30 H 1.09003 * 109.47060 * 119.99934 * 2 1 3 31 31 H 1.08997 * 109.47144 * 30.00121 * 4 3 2 32 32 H 1.09003 * 109.46981 * 149.99962 * 4 3 2 33 33 H 0.97000 * 119.99864 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46470 * 66.25552 * 15 13 3 35 35 H 1.08994 * 109.46946 * 306.25657 * 15 13 3 36 36 H 1.09005 * 109.45796 * 294.17281 * 17 16 15 37 37 H 1.08994 * 109.46334 * 54.14847 * 17 16 15 38 38 H 1.08990 * 109.47147 * 300.17093 * 20 18 17 39 39 H 1.09006 * 109.46431 * 60.17148 * 20 18 17 40 40 H 1.08991 * 109.47259 * 180.16600 * 20 18 17 41 41 H 1.08998 * 109.52580 * 182.50530 * 21 18 17 42 42 H 1.09004 * 109.51856 * 62.37929 * 21 18 17 43 43 H 1.08993 * 109.47698 * 59.99970 * 24 22 21 44 44 H 1.09008 * 109.46843 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.47352 * 299.99336 * 24 22 21 46 46 H 1.09000 * 109.46525 * 65.81864 * 25 16 15 47 47 H 1.09005 * 109.45488 * 305.84951 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0960 7 6 4.1491 2.3896 -2.8778 8 7 3.3491 3.1257 -3.6181 9 14 5.9136 2.0967 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9215 1.4171 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2429 2.0165 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3063 2.4724 16 7 2.1649 2.2498 3.5847 17 6 2.1763 1.5470 4.8741 18 6 2.5024 2.5368 5.9948 19 1 3.4883 2.9686 5.8223 20 6 2.4910 1.8089 7.3405 21 6 1.4517 3.6506 6.0072 22 6 1.4265 4.3347 4.6375 23 1 2.3947 4.7962 4.4434 24 6 0.3367 5.4086 4.6231 25 6 1.1307 3.2920 3.5572 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0955 3.1410 -1.1383 33 1 3.6752 3.5162 -4.4439 34 1 2.6978 0.4833 2.5802 35 1 0.9738 0.9154 2.4830 36 1 1.1967 1.1046 5.0552 37 1 2.9313 0.7612 4.8526 38 1 1.5054 1.3762 7.5111 39 1 3.2393 1.0163 7.3311 40 1 2.7205 2.5157 8.1379 41 1 1.7048 4.3817 6.7750 42 1 0.4713 3.2241 6.2194 43 1 0.5459 6.1491 5.3949 44 1 0.3188 5.8950 3.6477 45 1 -0.6315 4.9464 4.8159 46 1 0.1560 2.8414 3.7445 47 1 1.1263 3.7734 2.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076428025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = -50.326999 kcal Electronic energy + Delta-G solvation = -23512.949138 eV Core-core repulsion = 20308.932681 eV Total energy + Delta-G solvation = -3204.016458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75515 -38.40164 -35.25905 -34.20436 -33.45250 -32.72463 -30.06489 -28.46893 -26.78850 -26.53948 -26.23511 -23.26245 -22.93201 -21.68113 -20.81774 -19.65325 -18.19199 -16.57902 -16.26269 -15.79845 -15.36114 -15.11724 -14.72443 -14.41687 -14.31079 -14.14979 -13.56934 -13.29689 -12.93920 -12.75881 -12.69573 -12.54984 -12.37552 -12.09886 -11.96270 -11.84998 -11.70900 -11.41352 -11.23361 -11.14149 -10.86744 -10.80295 -10.69634 -10.53798 -10.52070 -10.23740 -10.17523 -10.07815 -9.55307 -8.78827 -8.39877 -8.06100 -7.57647 -6.00467 -4.04640 3.32510 3.39976 3.43707 3.53051 3.69799 4.24210 4.49257 4.64980 4.81269 4.82342 5.00622 5.17676 5.31643 5.34001 5.35504 5.39073 5.43099 5.46992 5.53824 5.56219 5.60195 5.62721 5.66082 5.75702 5.78892 5.81988 5.84240 5.89523 6.00113 6.04674 6.09008 6.21107 6.23911 6.24864 6.40631 6.49014 6.52155 7.03442 7.23580 7.28604 7.49888 7.62547 7.97000 8.28657 8.50585 8.96300 9.20963 9.60662 11.07592 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004139 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.584340 B = 6763.538713 C = 6980.381492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.520 5.520 17 C 0.063 3.937 18 C -0.090 4.090 19 H 0.080 0.920 20 C -0.144 4.144 21 C -0.109 4.109 22 C -0.088 4.088 23 H 0.081 0.919 24 C -0.145 4.145 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.022 0.978 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -4.814 18.266 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.397 6.397 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.065 4.065 18 C -0.109 4.109 19 H 0.098 0.902 20 C -0.202 4.202 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.099 0.901 24 C -0.202 4.202 25 C -0.067 4.067 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.545 -3.866 18.009 19.547 hybrid contribution 0.167 -0.719 -0.385 0.832 sum -6.378 -4.584 17.624 19.295 Atomic orbital electron populations 1.22224 0.96989 1.01295 1.02189 1.21378 0.93339 0.84451 1.02532 1.48271 1.64225 1.13196 1.07720 1.19231 0.96177 0.93583 0.78138 1.21489 0.96979 1.31634 1.06084 0.92441 1.24933 0.97795 0.94979 0.96435 1.69947 1.35568 1.33649 1.14355 0.86455 0.84762 0.78047 0.78233 1.19809 1.21041 1.20896 1.20147 0.78858 0.87170 0.84679 1.90653 1.44484 1.17798 1.86801 1.22057 1.00891 0.95374 0.90979 1.61467 1.49036 1.12748 1.01133 1.22137 0.99684 0.95868 0.88836 1.21158 1.00318 0.95717 0.93726 0.90169 1.21780 1.01568 1.00279 0.96576 1.21713 0.98532 0.97319 0.97094 1.21126 1.00127 0.95407 0.94027 0.90059 1.21775 0.98161 0.98314 1.01996 1.22229 0.90786 0.92642 1.00995 0.92253 0.93315 0.92014 0.89969 0.91979 0.95172 0.93991 0.92852 0.88610 0.92908 0.95317 0.90939 0.92956 0.92623 0.92569 0.92060 0.92545 0.92712 0.92273 0.93133 0.95967 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.18 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.84 -4.05 -0.02 1.71 16 3 N -0.60 -12.79 2.46 -175.06 -0.43 -13.22 16 4 C 0.25 6.54 5.16 -5.20 -0.03 6.51 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.51 10.69 7.20 -10.98 -0.08 10.61 16 14 O -0.52 -13.31 14.29 5.56 0.08 -13.23 16 15 C 0.04 0.60 3.92 -4.98 -0.02 0.58 16 16 N -0.52 -8.05 4.35 -236.12 -1.03 -9.08 16 17 C 0.06 0.75 4.74 -3.83 -0.02 0.74 16 18 C -0.09 -0.97 2.89 -90.53 -0.26 -1.23 16 19 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 21 C -0.11 -1.16 4.57 -26.61 -0.12 -1.28 16 22 C -0.09 -1.13 2.89 -90.54 -0.26 -1.39 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 24 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 25 C 0.06 0.92 4.40 -3.84 -0.02 0.90 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 7.12 -51.93 -0.37 0.26 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.06 0.84 6.61 -51.93 -0.34 0.49 16 31 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.10 1.37 7.55 -51.93 -0.39 0.98 16 35 H 0.05 0.73 6.83 -51.93 -0.35 0.38 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.82 8.01 -51.93 -0.42 0.40 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 1.70 6.05 -51.93 -0.31 1.39 16 LS Contribution 366.11 15.07 5.52 5.52 Total: -1.00 -32.64 366.11 -9.21 -41.85 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.88 Total: -2.25 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -0.19 Total: -0.59 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.72 Total: -48.46 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.64 -9.21 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076428025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.475 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds