Wall clock time and date at job start Tue Mar 31 2020 05:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47148 * 2 1 4 4 C 1.46498 * 120.00041 * 270.00014 * 3 2 1 5 5 C 1.50697 * 109.47074 * 269.99735 * 4 3 2 6 6 H 1.08003 * 119.99810 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00328 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00382 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47010 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46707 * 120.00150 * 9 7 5 12 12 H 1.48501 * 109.47297 * 240.00342 * 9 7 5 13 13 C 1.34783 * 119.99947 * 90.00088 * 3 2 1 14 14 O 1.21279 * 119.99881 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99968 * 359.97438 * 13 3 2 16 16 N 1.46893 * 109.46857 * 186.25752 * 15 13 3 17 17 C 1.46850 * 110.99773 * 190.60174 * 16 15 13 18 18 C 1.53043 * 109.57877 * 174.19336 * 17 16 15 19 19 H 1.08998 * 109.44942 * 299.17675 * 18 17 16 20 20 C 1.52997 * 109.56102 * 179.05053 * 18 17 16 21 21 C 1.53124 * 109.27592 * 59.07700 * 18 17 16 22 22 C 1.53119 * 109.21268 * 302.44842 * 21 18 17 23 23 H 1.08999 * 109.50214 * 297.63682 * 22 21 18 24 24 C 1.53004 * 109.49758 * 177.56126 * 22 21 18 25 25 C 1.46845 * 111.00476 * 66.39108 * 16 15 13 26 26 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47727 * 299.99750 * 1 2 3 28 28 H 1.08998 * 109.47484 * 60.00175 * 1 2 3 29 29 H 1.08998 * 109.47481 * 239.99812 * 2 1 3 30 30 H 1.09003 * 109.47060 * 119.99934 * 2 1 3 31 31 H 1.08997 * 109.47144 * 30.00121 * 4 3 2 32 32 H 1.09003 * 109.46981 * 149.99962 * 4 3 2 33 33 H 0.97000 * 119.99864 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46470 * 66.25552 * 15 13 3 35 35 H 1.08994 * 109.46946 * 306.25657 * 15 13 3 36 36 H 1.09005 * 109.45796 * 294.17281 * 17 16 15 37 37 H 1.08994 * 109.46334 * 54.14847 * 17 16 15 38 38 H 1.08990 * 109.47147 * 300.17093 * 20 18 17 39 39 H 1.09006 * 109.46431 * 60.17148 * 20 18 17 40 40 H 1.08991 * 109.47259 * 180.16600 * 20 18 17 41 41 H 1.08998 * 109.52580 * 182.50530 * 21 18 17 42 42 H 1.09004 * 109.51856 * 62.37929 * 21 18 17 43 43 H 1.08993 * 109.47698 * 59.99970 * 24 22 21 44 44 H 1.09008 * 109.46843 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.47352 * 299.99336 * 24 22 21 46 46 H 1.09000 * 109.46525 * 65.81864 * 25 16 15 47 47 H 1.09005 * 109.45488 * 305.84951 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3426 1.2302 -1.0960 7 6 4.1491 2.3896 -2.8778 8 7 3.3491 3.1257 -3.6181 9 14 5.9136 2.0967 -3.4167 10 1 6.6012 1.2416 -2.4162 11 1 5.9215 1.4171 -4.7371 12 1 6.6205 3.3982 -3.5255 13 6 2.2429 2.0165 1.1673 14 8 2.6468 3.1601 1.1672 15 6 1.9912 1.3063 2.4724 16 7 2.1649 2.2498 3.5847 17 6 2.1763 1.5470 4.8741 18 6 2.5024 2.5368 5.9948 19 1 3.4883 2.9686 5.8223 20 6 2.4910 1.8089 7.3405 21 6 1.4517 3.6506 6.0072 22 6 1.4265 4.3347 4.6375 23 1 2.3947 4.7962 4.4434 24 6 0.3367 5.4086 4.6231 25 6 1.1307 3.2920 3.5572 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6877 -2.0283 32 1 2.0955 3.1410 -1.1383 33 1 3.6752 3.5162 -4.4439 34 1 2.6978 0.4833 2.5802 35 1 0.9738 0.9154 2.4830 36 1 1.1967 1.1046 5.0552 37 1 2.9313 0.7612 4.8526 38 1 1.5054 1.3762 7.5111 39 1 3.2393 1.0163 7.3311 40 1 2.7205 2.5157 8.1379 41 1 1.7048 4.3817 6.7750 42 1 0.4713 3.2241 6.2194 43 1 0.5459 6.1491 5.3949 44 1 0.3188 5.8950 3.6477 45 1 -0.6315 4.9464 4.8159 46 1 0.1560 2.8414 3.7445 47 1 1.1263 3.7734 2.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076428025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:23 Heat of formation + Delta-G solvation = -71.093146 kcal Electronic energy + Delta-G solvation = -23513.849626 eV Core-core repulsion = 20308.932681 eV Total energy + Delta-G solvation = -3204.916945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.10509 -39.73563 -36.92166 -35.40986 -34.81547 -34.35018 -31.63234 -29.99995 -28.17179 -27.52068 -27.37798 -25.05142 -24.25109 -23.09449 -21.74073 -20.62089 -19.79335 -18.61886 -17.93306 -17.28184 -16.62144 -16.55312 -16.02850 -15.88682 -15.41791 -15.35821 -14.93374 -14.65368 -14.37246 -14.13908 -13.73682 -13.65276 -13.51411 -13.35367 -13.27581 -13.10236 -12.89720 -12.76922 -12.70535 -12.58085 -12.49499 -12.26161 -12.16560 -11.88953 -11.70546 -11.67831 -11.46422 -11.23793 -11.10432 -10.65059 -10.44543 -9.41908 -9.18013 -8.22306 -6.37082 1.35190 1.38071 1.49884 1.89207 2.24065 2.41256 2.98800 3.06985 3.69015 3.76516 3.89671 3.97404 4.08641 4.13646 4.25418 4.36168 4.42172 4.44667 4.48690 4.61156 4.63748 4.68523 4.70150 4.81026 4.82413 4.85951 4.93625 4.95287 4.98191 5.04794 5.06423 5.13986 5.21758 5.24441 5.32122 5.36830 5.37909 5.45028 5.57902 5.59365 5.87452 6.04107 6.07771 6.22976 6.71752 6.85471 7.29599 7.56699 8.84817 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019486 B = 0.004139 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.584340 B = 6763.538713 C = 6980.381492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.579 6.579 15 C 0.053 3.947 16 N -0.546 5.546 17 C 0.063 3.937 18 C -0.090 4.090 19 H 0.060 0.940 20 C -0.137 4.137 21 C -0.102 4.102 22 C -0.088 4.088 23 H 0.051 0.949 24 C -0.141 4.141 25 C 0.066 3.934 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 -7.211 20.626 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.271 5.271 17 C -0.064 4.064 18 C -0.109 4.109 19 H 0.078 0.922 20 C -0.194 4.194 21 C -0.139 4.139 22 C -0.107 4.107 23 H 0.070 0.930 24 C -0.198 4.198 25 C -0.062 4.062 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.767 -6.315 20.391 22.394 hybrid contribution 0.200 0.055 -1.134 1.153 sum -6.567 -6.260 19.258 21.288 Atomic orbital electron populations 1.22145 0.94729 1.03467 1.01420 1.21725 0.95173 0.81456 1.03878 1.48305 1.64312 1.15131 1.06164 1.18643 0.95203 0.91338 0.80472 1.21746 0.97914 1.31828 1.06403 0.92965 1.25867 1.02411 0.94484 0.96443 1.70067 1.37704 1.34341 1.14835 0.85362 0.79001 0.77985 0.78417 1.19135 1.19263 1.20846 1.21222 0.77402 0.86738 0.86280 1.90623 1.46964 1.20490 1.87761 1.21958 1.02998 0.94985 0.87824 1.61416 1.49648 1.13419 1.02604 1.22247 1.00955 0.96095 0.87093 1.21166 0.99223 0.95734 0.94814 0.92191 1.21716 1.02428 1.00336 0.94960 1.21670 0.99298 0.97476 0.95467 1.21105 0.99127 0.95374 0.95052 0.92997 1.21746 0.98326 0.98219 1.01540 1.22097 0.91594 0.93119 0.99366 0.88490 0.92553 0.94357 0.90935 0.88278 0.96177 0.98898 0.92456 0.86359 0.90055 0.93545 0.89994 0.91853 0.92103 0.91781 0.90738 0.91117 0.91030 0.94189 0.91677 0.94450 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.18 71.98 0.73 -3.27 16 2 C 0.10 3.09 5.84 86.38 0.50 3.59 16 3 N -0.61 -26.47 2.46 -826.16 -2.03 -28.50 16 4 C 0.27 14.77 5.16 85.63 0.44 15.21 16 5 C -0.54 -32.08 9.39 25.60 0.24 -31.84 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.50 21.49 7.20 87.66 0.63 22.12 16 14 O -0.58 -31.47 14.29 -3.03 -0.04 -31.51 16 15 C 0.05 1.59 3.92 85.56 0.33 1.92 16 16 N -0.55 -16.46 4.35 -900.93 -3.92 -20.38 16 17 C 0.06 1.34 4.74 86.33 0.41 1.75 16 18 C -0.09 -1.74 2.89 -10.74 -0.03 -1.78 16 19 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.14 -1.82 9.20 71.98 0.66 -1.16 16 21 C -0.10 -1.94 4.57 30.68 0.14 -1.80 16 22 C -0.09 -2.25 2.89 -10.74 -0.03 -2.29 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 C -0.14 -3.09 9.20 71.98 0.66 -2.43 16 25 C 0.07 2.01 4.40 86.32 0.38 2.39 16 26 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.06 1.33 7.12 -2.39 -0.02 1.31 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.10 2.34 6.61 -2.39 -0.02 2.32 16 31 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 32 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.12 3.02 7.55 -2.39 -0.02 3.00 16 35 H 0.08 1.99 6.83 -2.39 -0.02 1.97 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.08 1.59 8.01 -2.39 -0.02 1.57 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 47 H 0.05 1.84 6.05 -2.38 -0.01 1.83 16 Total: -1.00 -76.20 366.11 2.76 -73.44 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.90 Total: 12.83 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.54 Total: 3.29 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -5.66 Total: -106.15 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.04 Total: -31.51 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.20 2.76 -73.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076428025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.350 kcal (2) G-P(sol) polarization free energy of solvation -76.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds