Wall clock time and date at job start Tue Mar 31 2020 05:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47186 * 2 1 4 4 C 1.46501 * 119.99656 * 269.99918 * 3 2 1 5 5 C 1.50698 * 109.47013 * 269.99929 * 4 3 2 6 6 H 1.07996 * 119.99966 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00330 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46846 * 90.00274 * 9 7 5 11 11 H 1.48494 * 109.47122 * 210.00551 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00926 * 9 7 5 13 13 C 1.34770 * 120.00360 * 89.99774 * 3 2 1 14 14 O 1.21277 * 120.00397 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99890 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47218 * 173.87918 * 15 13 3 17 17 C 1.46847 * 110.99880 * 169.43436 * 16 15 13 18 18 C 1.53035 * 109.52138 * 185.84203 * 17 16 15 19 19 H 1.09004 * 109.50464 * 60.76019 * 18 17 16 20 20 C 1.52996 * 109.53623 * 180.85848 * 18 17 16 21 21 C 1.53116 * 109.28051 * 300.82028 * 18 17 16 22 22 C 1.53127 * 109.16045 * 57.65228 * 21 18 17 23 23 H 1.08995 * 109.50027 * 182.40632 * 22 21 18 24 24 C 1.53001 * 109.49994 * 62.32841 * 22 21 18 25 25 C 1.46849 * 111.00061 * 293.64271 * 16 15 13 26 26 H 1.08994 * 109.47245 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.46989 * 60.00309 * 1 2 3 28 28 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47245 * 239.99653 * 2 1 3 30 30 H 1.08997 * 109.46989 * 119.99691 * 2 1 3 31 31 H 1.09004 * 109.47385 * 29.99881 * 4 3 2 32 32 H 1.08997 * 109.46848 * 149.99671 * 4 3 2 33 33 H 0.96998 * 120.00195 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47085 * 53.88300 * 15 13 3 35 35 H 1.08999 * 109.47682 * 293.88543 * 15 13 3 36 36 H 1.08999 * 109.46020 * 65.82570 * 17 16 15 37 37 H 1.09001 * 109.46035 * 305.85801 * 17 16 15 38 38 H 1.09004 * 109.47622 * 179.90069 * 20 18 17 39 39 H 1.09002 * 109.47406 * 299.90052 * 20 18 17 40 40 H 1.09003 * 109.47124 * 59.90393 * 20 18 17 41 41 H 1.08998 * 109.52613 * 177.56020 * 21 18 17 42 42 H 1.08998 * 109.52201 * 297.68570 * 21 18 17 43 43 H 1.09003 * 109.46935 * 60.00089 * 24 22 21 44 44 H 1.08998 * 109.47225 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47294 * 300.00188 * 24 22 21 46 46 H 1.09004 * 109.45930 * 54.14570 * 25 16 15 47 47 H 1.08995 * 109.46213 * 294.17654 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0131 3.4358 -3.9289 10 1 3.1158 4.8559 -3.5071 11 1 3.4067 3.3134 -5.3555 12 1 1.6135 2.9692 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.4464 2.1508 3.5849 17 6 1.9952 1.6110 4.8739 18 6 2.3604 2.5882 5.9935 19 1 1.8644 3.5431 5.8194 20 6 1.9095 2.0163 7.3390 21 6 3.8774 2.7955 6.0088 22 6 4.3279 3.3119 4.6394 23 1 5.4124 3.4208 4.6304 24 6 3.6759 4.6687 4.3655 25 6 3.9056 2.3137 3.5591 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0285 32 1 2.0955 3.1410 -1.1385 33 1 5.7174 2.5737 -4.0833 34 1 2.5381 0.3636 2.4843 35 1 0.9245 1.1091 2.5787 36 1 2.4804 0.6522 5.0560 37 1 0.9142 1.4723 4.8511 38 1 2.1717 2.7123 8.1360 39 1 0.8297 1.8677 7.3272 40 1 2.4058 1.0615 7.5127 41 1 4.1379 3.5240 6.7766 42 1 4.3723 1.8482 6.2227 43 1 3.9749 5.3779 5.1374 44 1 3.9972 5.0361 3.3909 45 1 2.5915 4.5589 4.3734 46 1 4.2123 2.6854 2.5813 47 1 4.3819 1.3516 3.7474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076428027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:26 Heat of formation + Delta-G solvation = -42.099962 kcal Electronic energy + Delta-G solvation = -23784.903248 eV Core-core repulsion = 20581.243542 eV Total energy + Delta-G solvation = -3203.659706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87339 -38.54252 -35.36502 -34.18855 -33.03617 -32.65987 -30.32915 -28.65702 -26.83111 -26.62598 -26.39417 -23.14053 -22.94990 -21.79395 -21.29511 -18.64901 -18.19515 -16.89986 -16.57149 -15.94009 -15.26190 -15.06533 -14.83490 -14.25952 -14.24472 -13.91311 -13.74994 -13.43822 -13.09656 -12.98192 -12.75647 -12.50999 -12.27521 -12.07793 -12.00945 -11.76230 -11.68549 -11.41093 -11.31658 -11.17217 -10.92520 -10.82310 -10.67100 -10.47644 -10.46264 -10.20671 -10.09250 -10.01012 -9.51549 -8.88044 -8.56803 -8.03992 -7.65183 -6.06894 -4.05220 3.30795 3.36703 3.38960 3.42962 3.64621 4.21038 4.41638 4.68642 4.80752 4.87401 5.04883 5.17940 5.24425 5.28221 5.34754 5.39383 5.43719 5.49248 5.52808 5.56192 5.59281 5.62467 5.74150 5.76474 5.82862 5.90640 5.98034 6.01316 6.06571 6.09875 6.15217 6.17092 6.34194 6.39391 6.41218 6.55413 6.73942 6.78811 6.97941 7.16980 7.29467 7.42540 7.64403 8.33279 8.49931 8.95742 9.09501 9.54098 11.06558 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.004635 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.159538 B = 6040.133209 C = 6826.347613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.039 3.961 16 N -0.516 5.516 17 C 0.062 3.938 18 C -0.090 4.090 19 H 0.082 0.918 20 C -0.145 4.145 21 C -0.110 4.110 22 C -0.086 4.086 23 H 0.069 0.931 24 C -0.134 4.134 25 C 0.057 3.943 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -3.813 17.502 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.395 6.395 15 C -0.093 4.093 16 N -0.240 5.240 17 C -0.066 4.066 18 C -0.109 4.109 19 H 0.101 0.899 20 C -0.203 4.203 21 C -0.148 4.148 22 C -0.104 4.104 23 H 0.087 0.913 24 C -0.191 4.191 25 C -0.071 4.071 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.505 -2.688 17.272 19.439 hybrid contribution -0.070 -0.485 -0.638 0.804 sum -8.576 -3.173 16.634 18.982 Atomic orbital electron populations 1.22230 0.96821 1.01471 1.02244 1.21426 0.93368 0.84063 1.02933 1.47952 1.64683 1.13278 1.07014 1.19605 0.97136 0.93389 0.80125 1.21334 0.95385 1.32750 1.07053 0.90894 1.24852 0.94968 0.95811 0.97361 1.69895 1.15170 1.45090 1.23575 0.86854 0.81492 0.81651 0.79709 1.19907 1.21142 1.19089 1.20162 0.78635 0.87130 0.84664 1.90652 1.44378 1.17673 1.86780 1.22036 1.01642 0.94713 0.90858 1.61507 1.13072 1.48465 1.00994 1.22138 0.99918 0.95579 0.88935 1.21187 0.96360 0.99752 0.93604 0.89935 1.21796 1.00987 1.00790 0.96710 1.21694 0.95307 1.00590 0.97219 1.21116 0.99408 0.96168 0.93747 0.91279 1.21690 1.02030 0.94638 1.00780 1.22256 0.86341 0.97105 1.01382 0.92987 0.92226 0.92081 0.89839 0.91635 0.95437 0.94623 0.92613 0.92732 0.88648 0.95263 0.91072 0.92601 0.92722 0.92963 0.92070 0.92591 0.94280 0.92393 0.91354 0.88528 0.95819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.65 5.96 -4.04 -0.02 1.62 16 3 N -0.60 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 6 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.51 10.33 7.21 -10.99 -0.08 10.25 16 14 O -0.52 -12.66 14.28 5.56 0.08 -12.58 16 15 C 0.04 0.59 4.18 -4.97 -0.02 0.56 16 16 N -0.52 -7.71 3.63 -236.11 -0.86 -8.56 16 17 C 0.06 0.72 4.74 -3.83 -0.02 0.70 16 18 C -0.09 -0.95 2.53 -90.54 -0.23 -1.18 16 19 H 0.08 0.95 6.58 -51.93 -0.34 0.61 16 20 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 21 C -0.11 -1.21 4.79 -26.61 -0.13 -1.33 16 22 C -0.09 -1.15 3.21 -90.54 -0.29 -1.44 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 C -0.13 -1.91 8.75 37.16 0.33 -1.58 16 25 C 0.06 0.90 4.55 -3.84 -0.02 0.88 16 26 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.87 6.27 -51.93 -0.33 0.54 16 31 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.05 0.77 7.05 -51.93 -0.37 0.40 16 35 H 0.10 1.23 7.24 -51.93 -0.38 0.85 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.03 6.01 -51.93 -0.31 0.71 16 46 H 0.10 1.92 6.05 -51.93 -0.31 1.61 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.80 358.29 -8.57 -41.37 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.64 Total: -0.77 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.22 Total: -2.27 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.51 Total: -48.23 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.08 Total: -12.58 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.80 -8.57 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076428027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.732 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds