Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47186 * 2 1 4 4 C 1.46501 * 119.99656 * 269.99918 * 3 2 1 5 5 C 1.50698 * 109.47013 * 269.99929 * 4 3 2 6 6 H 1.07996 * 119.99966 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99986 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00330 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00006 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46846 * 90.00274 * 9 7 5 11 11 H 1.48494 * 109.47122 * 210.00551 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00926 * 9 7 5 13 13 C 1.34770 * 120.00360 * 89.99774 * 3 2 1 14 14 O 1.21277 * 120.00397 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99890 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47218 * 173.87918 * 15 13 3 17 17 C 1.46847 * 110.99880 * 169.43436 * 16 15 13 18 18 C 1.53035 * 109.52138 * 185.84203 * 17 16 15 19 19 H 1.09004 * 109.50464 * 60.76019 * 18 17 16 20 20 C 1.52996 * 109.53623 * 180.85848 * 18 17 16 21 21 C 1.53116 * 109.28051 * 300.82028 * 18 17 16 22 22 C 1.53127 * 109.16045 * 57.65228 * 21 18 17 23 23 H 1.08995 * 109.50027 * 182.40632 * 22 21 18 24 24 C 1.53001 * 109.49994 * 62.32841 * 22 21 18 25 25 C 1.46849 * 111.00061 * 293.64271 * 16 15 13 26 26 H 1.08994 * 109.47245 * 300.00347 * 1 2 3 27 27 H 1.08997 * 109.46989 * 60.00309 * 1 2 3 28 28 H 1.09003 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47245 * 239.99653 * 2 1 3 30 30 H 1.08997 * 109.46989 * 119.99691 * 2 1 3 31 31 H 1.09004 * 109.47385 * 29.99881 * 4 3 2 32 32 H 1.08997 * 109.46848 * 149.99671 * 4 3 2 33 33 H 0.96998 * 120.00195 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.47085 * 53.88300 * 15 13 3 35 35 H 1.08999 * 109.47682 * 293.88543 * 15 13 3 36 36 H 1.08999 * 109.46020 * 65.82570 * 17 16 15 37 37 H 1.09001 * 109.46035 * 305.85801 * 17 16 15 38 38 H 1.09004 * 109.47622 * 179.90069 * 20 18 17 39 39 H 1.09002 * 109.47406 * 299.90052 * 20 18 17 40 40 H 1.09003 * 109.47124 * 59.90393 * 20 18 17 41 41 H 1.08998 * 109.52613 * 177.56020 * 21 18 17 42 42 H 1.08998 * 109.52201 * 297.68570 * 21 18 17 43 43 H 1.09003 * 109.46935 * 60.00089 * 24 22 21 44 44 H 1.08998 * 109.47225 * 179.97438 * 24 22 21 45 45 H 1.08999 * 109.47294 * 300.00188 * 24 22 21 46 46 H 1.09004 * 109.45930 * 54.14570 * 25 16 15 47 47 H 1.08995 * 109.46213 * 294.17654 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0131 3.4358 -3.9289 10 1 3.1158 4.8559 -3.5071 11 1 3.4067 3.3134 -5.3555 12 1 1.6135 2.9692 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9912 1.3065 2.4723 16 7 2.4464 2.1508 3.5849 17 6 1.9952 1.6110 4.8739 18 6 2.3604 2.5882 5.9935 19 1 1.8644 3.5431 5.8194 20 6 1.9095 2.0163 7.3390 21 6 3.8774 2.7955 6.0088 22 6 4.3279 3.3119 4.6394 23 1 5.4124 3.4208 4.6304 24 6 3.6759 4.6687 4.3655 25 6 3.9056 2.3137 3.5591 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6876 -2.0285 32 1 2.0955 3.1410 -1.1385 33 1 5.7174 2.5737 -4.0833 34 1 2.5381 0.3636 2.4843 35 1 0.9245 1.1091 2.5787 36 1 2.4804 0.6522 5.0560 37 1 0.9142 1.4723 4.8511 38 1 2.1717 2.7123 8.1360 39 1 0.8297 1.8677 7.3272 40 1 2.4058 1.0615 7.5127 41 1 4.1379 3.5240 6.7766 42 1 4.3723 1.8482 6.2227 43 1 3.9749 5.3779 5.1374 44 1 3.9972 5.0361 3.3909 45 1 2.5915 4.5589 4.3734 46 1 4.2123 2.6854 2.5813 47 1 4.3819 1.3516 3.7474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076428027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = -63.407616 kcal Electronic energy + Delta-G solvation = -23785.827218 eV Core-core repulsion = 20581.243542 eV Total energy + Delta-G solvation = -3204.583676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17772 -39.86633 -36.95028 -35.37773 -34.78160 -33.99078 -31.90002 -30.18340 -28.29894 -27.73819 -27.33234 -24.72573 -24.24231 -23.15938 -22.38131 -19.74438 -19.65355 -19.10307 -18.01972 -17.33506 -16.64142 -16.49545 -15.99407 -15.81199 -15.52249 -15.14343 -14.83425 -14.72043 -14.62012 -14.28062 -14.11688 -13.78276 -13.69721 -13.46051 -13.21298 -12.91477 -12.87024 -12.69157 -12.52566 -12.42860 -12.39632 -12.25617 -12.02987 -11.89956 -11.79532 -11.74984 -11.38314 -11.27852 -10.97727 -10.84163 -10.46522 -9.36314 -9.18916 -8.35185 -6.39741 1.30657 1.35110 1.43349 1.86877 2.23814 2.29739 2.98479 3.00112 3.68742 3.76963 3.91654 3.95583 4.07896 4.16401 4.27079 4.32510 4.37019 4.45025 4.54829 4.63362 4.64625 4.70447 4.76539 4.81827 4.83379 4.87399 4.92745 4.94686 4.96607 5.00888 5.02305 5.07901 5.20139 5.22621 5.35989 5.39204 5.45819 5.46607 5.47466 5.66397 5.68691 5.99376 6.21883 6.25841 6.61172 6.78242 7.21780 7.52169 8.81903 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.004635 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.159538 B = 6040.133209 C = 6826.347613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.229 3.771 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.239 1.239 13 C 0.497 3.503 14 O -0.572 6.572 15 C 0.051 3.949 16 N -0.531 5.531 17 C 0.062 3.938 18 C -0.089 4.089 19 H 0.071 0.929 20 C -0.138 4.138 21 C -0.103 4.103 22 C -0.086 4.086 23 H 0.068 0.932 24 C -0.126 4.126 25 C 0.062 3.938 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -4.919 19.442 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.162 1.162 13 C 0.285 3.715 14 O -0.451 6.451 15 C -0.080 4.080 16 N -0.256 5.256 17 C -0.065 4.065 18 C -0.107 4.107 19 H 0.090 0.910 20 C -0.196 4.196 21 C -0.141 4.141 22 C -0.105 4.105 23 H 0.087 0.913 24 C -0.183 4.183 25 C -0.066 4.066 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -11.252 -3.850 19.239 22.617 hybrid contribution 0.869 -0.182 -1.202 1.495 sum -10.383 -4.032 18.036 21.198 Atomic orbital electron populations 1.22145 0.93828 1.03601 1.02116 1.21750 0.95733 0.81245 1.03639 1.48083 1.64713 1.15116 1.05773 1.19222 0.94604 0.92881 0.82674 1.21562 0.97099 1.31945 1.06613 0.95545 1.25837 0.96687 0.97167 0.98946 1.70047 1.17422 1.46639 1.24498 0.85726 0.80488 0.78973 0.77824 1.20333 1.19876 1.16195 1.21187 0.77241 0.86822 0.86242 1.90627 1.46537 1.20243 1.87675 1.21992 1.03787 0.94205 0.87983 1.61468 1.12181 1.49420 1.02543 1.22278 1.00973 0.96114 0.87161 1.21186 0.95734 0.99203 0.94624 0.91040 1.21732 1.01600 1.01082 0.95149 1.21651 0.95861 1.01245 0.95326 1.21132 0.99366 0.95112 0.94896 0.91346 1.21595 1.01476 0.95742 0.99485 1.22073 0.87493 0.97635 0.99438 0.91882 0.93592 0.88750 0.91207 0.88975 0.93625 0.96695 0.92298 0.91200 0.85294 0.94206 0.89297 0.91815 0.91808 0.92323 0.90560 0.91743 0.92034 0.95995 0.92109 0.93770 0.95377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 10.24 71.98 0.74 -2.75 16 2 C 0.10 2.91 5.96 86.38 0.51 3.42 16 3 N -0.60 -24.89 2.46 -826.17 -2.03 -26.92 16 4 C 0.23 11.43 4.23 85.63 0.36 11.79 16 5 C -0.53 -32.10 9.94 25.60 0.25 -31.84 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.69 5.47 84.66 0.46 1.16 16 8 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 9 Si 0.95 45.52 27.47 68.60 1.88 47.41 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 13 C 0.50 20.55 7.21 87.66 0.63 21.18 16 14 O -0.57 -29.41 14.28 -3.02 -0.04 -29.45 16 15 C 0.05 1.47 4.18 85.56 0.36 1.83 16 16 N -0.53 -15.38 3.63 -900.92 -3.27 -18.65 16 17 C 0.06 1.25 4.74 86.32 0.41 1.66 16 18 C -0.09 -1.62 2.53 -10.74 -0.03 -1.64 16 19 H 0.07 1.49 6.58 -2.38 -0.02 1.47 16 20 C -0.14 -1.75 9.20 71.98 0.66 -1.09 16 21 C -0.10 -2.03 4.79 30.68 0.15 -1.88 16 22 C -0.09 -2.32 3.21 -10.74 -0.03 -2.36 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 C -0.13 -3.67 8.75 71.98 0.63 -3.04 16 25 C 0.06 2.00 4.55 86.32 0.39 2.39 16 26 H 0.06 1.26 7.41 -2.39 -0.02 1.24 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 30 H 0.09 2.20 6.27 -2.39 -0.01 2.19 16 31 H 0.05 2.11 7.13 -2.38 -0.02 2.09 16 32 H 0.01 0.81 6.85 -2.39 -0.02 0.79 16 33 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 34 H 0.07 1.82 7.05 -2.38 -0.02 1.80 16 35 H 0.13 2.85 7.24 -2.39 -0.02 2.83 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 1.51 8.01 -2.39 -0.02 1.49 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.06 1.85 6.01 -2.39 -0.01 1.83 16 46 H 0.04 1.90 6.05 -2.38 -0.01 1.88 16 47 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -77.33 358.29 3.19 -74.14 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.85 Total: 15.18 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 5.50 Total: -1.18 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -5.00 Total: -106.09 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.04 Total: -29.45 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.41 kcal Total: -77.33 3.19 -74.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076428027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.731 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds