Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46748 * 2 1 4 4 C 1.46499 * 119.99592 * 90.00378 * 3 2 1 5 5 C 1.50701 * 109.47260 * 90.00114 * 4 3 2 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99694 * 180.27562 * 5 4 3 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.34771 * 119.99877 * 269.99734 * 3 2 1 14 14 O 1.21279 * 120.00037 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00343 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47291 * 179.97438 * 15 13 3 17 17 C 1.46847 * 111.00291 * 294.21111 * 16 15 13 18 18 C 1.53037 * 109.52247 * 174.15864 * 17 16 15 19 19 H 1.09000 * 109.53823 * 299.21652 * 18 17 16 20 20 C 1.52999 * 109.50041 * 179.11867 * 18 17 16 21 21 C 1.53118 * 109.27894 * 59.17980 * 18 17 16 22 22 C 1.53118 * 109.15940 * 302.34287 * 21 18 17 23 23 H 1.09006 * 109.53420 * 177.61095 * 22 21 18 24 24 C 1.52992 * 109.50402 * 297.71412 * 22 21 18 25 25 C 1.46847 * 111.00042 * 169.99576 * 16 15 13 26 26 H 1.08998 * 109.47336 * 60.00133 * 1 2 3 27 27 H 1.09002 * 109.47059 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47089 * 299.99683 * 1 2 3 29 29 H 1.08997 * 109.47089 * 240.00317 * 2 1 3 30 30 H 1.08998 * 109.47336 * 119.99867 * 2 1 3 31 31 H 1.09000 * 109.47197 * 329.99120 * 4 3 2 32 32 H 1.09007 * 109.46342 * 209.99692 * 4 3 2 33 33 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46734 * 299.99961 * 15 13 3 35 35 H 1.09001 * 109.47070 * 59.99561 * 15 13 3 36 36 H 1.08996 * 109.45724 * 294.17679 * 17 16 15 37 37 H 1.09004 * 109.46068 * 54.14499 * 17 16 15 38 38 H 1.08999 * 109.47061 * 300.20051 * 20 18 17 39 39 H 1.08999 * 109.47237 * 60.19613 * 20 18 17 40 40 H 1.08995 * 109.47431 * 180.19917 * 20 18 17 41 41 H 1.08992 * 109.52180 * 182.43636 * 21 18 17 42 42 H 1.09000 * 109.52183 * 62.24454 * 21 18 17 43 43 H 1.09004 * 109.47417 * 179.80523 * 24 22 21 44 44 H 1.09002 * 109.47068 * 299.80271 * 24 22 21 45 45 H 1.08997 * 109.47619 * 59.80675 * 24 22 21 46 46 H 1.09000 * 109.46541 * 305.85716 * 25 16 15 47 47 H 1.09000 * 109.45756 * 65.83914 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 1.2688 5 6 3.6857 1.8351 1.7037 6 1 4.3426 1.2304 1.0961 7 6 4.1474 2.3854 2.8805 8 7 3.3475 3.1215 3.6207 9 14 5.9094 2.0855 3.4237 10 1 6.5971 1.2306 2.4231 11 1 6.6202 3.3844 3.5376 12 1 5.9116 1.4028 4.7424 13 6 2.2429 2.0166 -1.1672 14 8 2.6466 3.1602 -1.1672 15 6 1.9913 1.3064 -2.4723 16 7 2.3090 2.2065 -3.5889 17 6 1.3865 3.3486 -3.6231 18 6 1.8345 4.3356 -4.7034 19 1 2.8354 4.7000 -4.4719 20 6 0.8606 5.5146 -4.7535 21 6 1.8496 3.6270 -6.0607 22 6 2.7803 2.4137 -5.9837 23 1 2.7630 1.8801 -6.9341 24 6 4.2063 2.8817 -5.6866 25 6 2.3050 1.4823 -4.8663 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5816 1.6877 2.0284 32 1 2.0954 3.1411 1.1384 33 1 3.6722 3.5083 4.4488 34 1 2.6212 0.4187 -2.5302 35 1 0.9432 1.0125 -2.5299 36 1 0.3801 2.9958 -3.8481 37 1 1.3885 3.8462 -2.6532 38 1 -0.1403 5.1495 -4.9836 39 1 0.8502 6.0186 -3.7871 40 1 1.1781 6.2156 -5.5255 41 1 2.2095 4.3142 -6.8263 42 1 0.8412 3.2973 -6.3107 43 1 4.8678 2.0173 -5.6285 44 1 4.5443 3.5450 -6.4828 45 1 4.2229 3.4162 -4.7369 46 1 2.9740 0.6243 -4.7995 47 1 1.2942 1.1385 -5.0856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076428029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = -66.227270 kcal Electronic energy + Delta-G solvation = -23737.906752 eV Core-core repulsion = 20533.200807 eV Total energy + Delta-G solvation = -3204.705945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14709 -39.81980 -36.91801 -35.37730 -34.80864 -33.95928 -31.61887 -29.95308 -28.08202 -27.66912 -27.39839 -25.04731 -24.26516 -23.25752 -22.31843 -19.91644 -19.53285 -18.60929 -17.87030 -17.32147 -16.64460 -16.59017 -16.03633 -15.77210 -15.45530 -15.15780 -14.80867 -14.64845 -14.39707 -14.23966 -14.12169 -13.70118 -13.52956 -13.35555 -13.22088 -13.06318 -12.82747 -12.68782 -12.54897 -12.49151 -12.35988 -12.29484 -12.15187 -11.87376 -11.81410 -11.66991 -11.40638 -11.16429 -11.00916 -10.64837 -10.37845 -9.40577 -9.11353 -8.21979 -6.36664 1.35272 1.38037 1.49879 1.90618 2.26252 2.41787 3.03233 3.07387 3.71405 3.80078 3.91392 4.02110 4.11066 4.19120 4.27101 4.34485 4.42027 4.44961 4.55076 4.58814 4.63542 4.71670 4.76792 4.86173 4.90125 4.90914 4.94311 4.96954 5.00410 5.05589 5.10706 5.21602 5.22442 5.23286 5.32096 5.37381 5.42757 5.49701 5.59788 5.68555 5.88489 6.07396 6.08407 6.27531 6.72223 6.86813 7.30105 7.58099 8.85111 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.004499 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.861151 B = 6222.130163 C = 6636.645227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.053 3.947 16 N -0.539 5.539 17 C 0.063 3.937 18 C -0.087 4.087 19 H 0.056 0.944 20 C -0.142 4.142 21 C -0.104 4.104 22 C -0.085 4.085 23 H 0.097 0.903 24 C -0.138 4.138 25 C 0.060 3.940 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.037 0.963 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.020 0.980 32 H -0.007 1.007 33 H 0.266 0.734 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.040 0.960 46 H 0.083 0.917 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -6.790 -20.195 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.284 3.716 14 O -0.457 6.457 15 C -0.078 4.078 16 N -0.264 5.264 17 C -0.065 4.065 18 C -0.106 4.106 19 H 0.075 0.925 20 C -0.199 4.199 21 C -0.141 4.141 22 C -0.103 4.103 23 H 0.115 0.885 24 C -0.196 4.196 25 C -0.067 4.067 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.011 0.989 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.666 -5.940 -19.947 21.570 hybrid contribution 0.104 0.093 1.109 1.118 sum -5.562 -5.847 -18.838 20.493 Atomic orbital electron populations 1.22140 0.94730 1.03440 1.01428 1.21723 0.95165 0.81486 1.03841 1.48300 1.64329 1.15110 1.06185 1.18641 0.95162 0.91356 0.80491 1.21736 0.97929 1.31862 1.06238 0.93013 1.25852 1.02339 0.94509 0.96461 1.70060 1.37728 1.34476 1.14717 0.85372 0.79065 0.77987 0.78402 1.19160 1.20841 1.19300 1.21219 0.77352 0.86745 0.86281 1.90609 1.46986 1.20447 1.87691 1.21949 1.02115 0.95852 0.87875 1.61427 1.52977 1.09059 1.02905 1.22152 0.92546 0.92136 0.99632 1.21125 0.99364 0.95103 0.95019 0.92510 1.21755 0.99268 0.97512 1.01405 1.21657 0.99827 0.96938 0.95724 1.21193 0.95181 0.96042 0.97935 0.88491 1.21718 0.95916 1.00916 1.01002 1.22249 1.00428 0.96328 0.87718 0.92491 0.88540 0.94407 0.88260 0.91035 0.96238 0.98857 0.92465 0.86380 0.90207 0.94859 0.93004 0.91842 0.94317 0.91140 0.90751 0.91194 0.93069 0.92548 0.94083 0.89866 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.10 3.08 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.32 2.46 -826.15 -2.03 -28.35 16 4 C 0.27 14.72 5.16 85.63 0.44 15.17 16 5 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 9 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.50 21.25 7.35 87.66 0.64 21.90 16 14 O -0.58 -30.93 13.90 -3.03 -0.04 -30.98 16 15 C 0.05 1.55 4.00 85.56 0.34 1.90 16 16 N -0.54 -15.77 3.68 -900.92 -3.32 -19.09 16 17 C 0.06 1.91 4.39 86.33 0.38 2.29 16 18 C -0.09 -2.22 2.53 -10.74 -0.03 -2.25 16 19 H 0.06 1.74 6.58 -2.39 -0.02 1.73 16 20 C -0.14 -3.15 9.20 71.98 0.66 -2.49 16 21 C -0.10 -1.94 4.79 30.67 0.15 -1.79 16 22 C -0.08 -1.57 3.21 -10.74 -0.03 -1.60 16 23 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 24 C -0.14 -3.06 8.75 71.98 0.63 -2.43 16 25 C 0.06 1.23 4.90 86.33 0.42 1.65 16 26 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 30 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 32 H -0.01 -0.43 7.42 -2.38 -0.02 -0.45 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.12 2.93 7.25 -2.39 -0.02 2.91 16 35 H 0.08 1.94 7.17 -2.39 -0.02 1.92 16 36 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 2.06 5.78 -2.38 -0.01 2.04 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.04 1.20 6.01 -2.39 -0.01 1.19 16 46 H 0.08 1.54 8.02 -2.39 -0.02 1.52 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.45 361.32 3.39 -72.06 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.91 Total: 13.64 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.56 Total: 1.87 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.06 Total: -104.67 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.04 Total: -30.98 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -75.45 3.39 -72.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076428029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.836 kcal (2) G-P(sol) polarization free energy of solvation -75.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds