Wall clock time and date at job start Tue Mar 31 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46997 * 2 1 4 4 C 1.46499 * 119.99397 * 90.00732 * 3 2 1 5 5 C 1.50700 * 109.47250 * 89.99887 * 4 3 2 6 6 H 1.07995 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99826 * 179.72040 * 5 4 3 8 8 N 1.31509 * 120.00261 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46949 * 90.00202 * 9 7 5 11 11 H 1.48500 * 109.47315 * 210.00174 * 9 7 5 12 12 H 1.48506 * 109.47135 * 330.00131 * 9 7 5 13 13 C 1.34772 * 120.00312 * 270.00447 * 3 2 1 14 14 O 1.21278 * 120.00086 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00138 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47370 * 174.06184 * 15 13 3 17 17 C 1.46772 * 111.00044 * 169.45092 * 16 15 13 18 18 C 1.52863 * 110.07298 * 168.47372 * 17 16 15 19 19 C 1.53231 * 109.38577 * 77.03559 * 18 17 16 20 20 C 1.53090 * 108.81807 * 285.44139 * 19 18 17 21 21 C 1.52889 * 109.33849 * 316.35509 * 20 19 18 22 22 C 1.52836 * 109.60023 * 112.58224 * 21 20 19 23 23 C 1.46989 * 110.99622 * 293.65719 * 16 15 13 24 24 H 1.09001 * 109.46538 * 299.99239 * 1 2 3 25 25 H 1.08997 * 109.47293 * 59.99393 * 1 2 3 26 26 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46538 * 240.00760 * 2 1 3 28 28 H 1.08997 * 109.47293 * 120.00607 * 2 1 3 29 29 H 1.08996 * 109.47415 * 329.99726 * 4 3 2 30 30 H 1.08999 * 109.47008 * 209.99813 * 4 3 2 31 31 H 0.96999 * 120.00177 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.46797 * 294.05953 * 15 13 3 33 33 H 1.08999 * 109.47285 * 54.05287 * 15 13 3 34 34 H 1.08997 * 109.37332 * 288.65641 * 17 16 15 35 35 H 1.09003 * 109.37374 * 48.28985 * 17 16 15 36 36 H 1.09004 * 109.48276 * 317.06050 * 18 17 16 37 37 H 1.08998 * 109.49890 * 197.02055 * 18 17 16 38 38 H 1.09000 * 109.57729 * 165.64008 * 19 18 17 39 39 H 1.09001 * 109.69058 * 45.30777 * 19 18 17 40 40 H 1.08998 * 109.48938 * 196.39542 * 20 19 18 41 41 H 1.08997 * 109.51202 * 76.32786 * 20 19 18 42 42 H 1.09000 * 109.45235 * 352.54099 * 21 20 19 43 43 H 1.09000 * 109.42561 * 232.60268 * 21 20 19 44 44 H 1.09007 * 109.48854 * 163.99928 * 22 21 20 45 45 H 1.08996 * 109.51133 * 43.94375 * 22 21 20 46 46 H 1.09000 * 109.49108 * 242.56684 * 23 16 15 47 47 H 1.08994 * 109.49527 * 2.62378 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2308 1.0957 7 6 4.1511 2.3945 2.8748 8 7 3.3526 3.1346 3.6125 9 14 5.9156 2.1015 3.4136 10 1 6.7877 3.1636 2.8510 11 1 5.9920 2.1321 4.8963 12 1 6.3697 0.7759 2.9217 13 6 2.2429 2.0167 -1.1671 14 8 2.6475 3.1599 -1.1671 15 6 1.9911 1.3066 -2.4723 16 7 2.1721 2.2483 -3.5850 17 6 2.1822 1.5449 -4.8731 18 6 2.0833 2.5499 -6.0206 19 6 3.4453 3.2207 -6.2281 20 6 3.6767 4.2283 -5.0990 21 6 2.3933 5.0240 -4.8597 22 6 1.8187 4.6700 -3.4884 23 6 1.1424 3.2970 -3.5602 24 1 -0.3632 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.5819 1.6875 2.0284 30 1 2.0956 3.1409 1.1386 31 1 3.6798 3.5280 4.4366 32 1 2.6940 0.4802 -2.5777 33 1 0.9719 0.9204 -2.4851 34 1 3.1082 0.9778 -4.9681 35 1 1.3351 0.8604 -4.9180 36 1 1.3383 3.3074 -5.7772 37 1 1.7903 2.0319 -6.9337 38 1 3.4553 3.7383 -7.1873 39 1 4.2323 2.4667 -6.2117 40 1 4.4803 4.9095 -5.3785 41 1 3.9506 3.6971 -4.1874 42 1 1.6649 4.7791 -5.6327 43 1 2.6160 6.0904 -4.8955 44 1 1.0853 5.4217 -3.1963 45 1 2.6227 4.6413 -2.7531 46 1 0.5389 3.2356 -4.4658 47 1 0.5040 3.1594 -2.6876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076456195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:46 Heat of formation + Delta-G solvation = -26.783921 kcal Electronic energy + Delta-G solvation = -24027.614276 eV Core-core repulsion = 20824.618723 eV Total energy + Delta-G solvation = -3202.995553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76826 -38.33054 -35.25388 -34.59997 -32.75040 -32.65431 -30.07010 -29.34838 -27.20882 -26.06082 -25.33201 -22.98571 -22.47671 -21.93114 -20.94391 -18.94802 -18.21675 -16.76885 -16.29750 -15.99663 -15.74178 -14.99444 -14.70172 -14.38364 -14.09865 -14.06815 -13.46185 -13.39182 -13.26160 -12.95743 -12.60119 -12.40824 -12.00791 -11.77142 -11.63034 -11.48722 -11.32787 -11.16977 -11.12381 -10.87429 -10.82030 -10.68686 -10.66107 -10.49631 -10.28392 -10.09760 -10.07087 -9.81676 -9.57474 -8.69851 -8.39249 -7.95116 -7.56758 -6.00124 -4.04342 3.34103 3.40098 3.41752 3.55774 3.73685 4.28888 4.49688 4.80799 4.95572 5.03253 5.13439 5.21568 5.30860 5.33316 5.35544 5.39284 5.43151 5.57699 5.62522 5.65588 5.68311 5.75802 5.81944 5.85798 5.92246 5.96229 6.02004 6.04475 6.08558 6.25047 6.33985 6.39803 6.46400 6.49263 6.51555 6.83707 6.95571 7.06139 7.26923 7.37549 7.50910 7.65209 7.97456 8.29192 8.52694 8.96801 9.24548 9.61033 11.07845 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018383 B = 0.004841 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.806588 B = 5782.578049 C = 6496.737565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.518 6.518 15 C 0.036 3.964 16 N -0.514 5.514 17 C 0.058 3.942 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.115 4.115 23 C 0.061 3.939 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.048 -4.477 -17.239 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.095 4.095 16 N -0.239 5.239 17 C -0.069 4.069 18 C -0.178 4.178 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.067 4.067 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.069 0.931 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.380 -3.527 -16.992 18.169 hybrid contribution 0.169 -0.744 0.337 0.834 sum -5.212 -4.271 -16.655 17.966 Atomic orbital electron populations 1.22222 0.97046 1.01255 1.02147 1.21367 0.93289 0.84535 1.02473 1.48259 1.64389 1.13132 1.07746 1.19207 0.96085 0.93568 0.78148 1.21447 0.96937 1.31573 1.06236 0.92540 1.24923 0.97732 0.94966 0.96451 1.69930 1.35622 1.33384 1.14586 0.86523 0.84952 0.78615 0.77463 1.20571 1.21232 1.19980 1.20130 0.78956 0.87191 0.84618 1.90616 1.44348 1.17641 1.86705 1.22176 1.00652 0.95521 0.91148 1.61735 1.49051 1.12149 1.00996 1.22153 1.00465 0.95421 0.88895 1.22186 0.99349 0.99200 0.97051 1.21577 0.96466 0.98476 0.98073 1.21688 0.96711 0.97311 1.00254 1.21704 0.97522 0.98786 0.97619 1.21771 1.01594 0.94323 0.97645 1.22261 0.92194 0.92624 0.99574 0.92054 0.93338 0.92300 0.92023 0.90046 0.95299 0.93985 0.92809 0.88857 0.92990 0.90905 0.95545 0.89407 0.92234 0.93137 0.92328 0.93582 0.88967 0.92356 0.93253 0.93206 0.88191 0.93066 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.18 37.16 0.38 -1.88 16 2 C 0.11 1.72 5.85 -4.04 -0.02 1.70 16 3 N -0.60 -12.59 2.46 -175.06 -0.43 -13.01 16 4 C 0.25 6.50 5.16 -5.19 -0.03 6.47 16 5 C -0.52 -14.89 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.33 7.01 -10.99 -0.08 10.25 16 14 O -0.52 -12.58 13.05 5.56 0.07 -12.50 16 15 C 0.04 0.55 3.65 -4.98 -0.02 0.53 16 16 N -0.51 -7.43 2.67 -236.06 -0.63 -8.06 16 17 C 0.06 0.67 5.20 -3.96 -0.02 0.64 16 18 C -0.14 -1.44 5.32 -26.68 -0.14 -1.58 16 19 C -0.11 -1.17 5.77 -26.57 -0.15 -1.33 16 20 C -0.12 -1.59 5.50 -26.74 -0.15 -1.74 16 21 C -0.12 -1.51 5.46 -26.87 -0.15 -1.66 16 22 C -0.12 -1.75 5.40 -26.71 -0.14 -1.90 16 23 C 0.06 0.87 4.43 -3.67 -0.02 0.85 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.62 7.12 -51.93 -0.37 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.82 6.61 -51.93 -0.34 0.48 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 1.30 7.63 -51.93 -0.40 0.91 16 33 H 0.05 0.69 6.83 -51.93 -0.35 0.34 16 34 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 35 H 0.03 0.27 8.05 -51.93 -0.42 -0.14 16 36 H 0.09 0.94 2.86 -51.93 -0.15 0.79 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.63 7.84 -51.93 -0.41 0.22 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.48 6.33 -51.93 -0.33 1.15 16 42 H 0.06 0.66 5.42 -51.93 -0.28 0.38 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.92 5.79 -51.93 -0.30 1.62 16 46 H 0.05 0.62 5.46 -51.93 -0.28 0.34 16 47 H 0.05 0.81 7.06 -51.93 -0.37 0.44 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -31.52 347.58 -9.12 -40.65 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.13 Total: -0.14 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.96 Total: -3.18 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.32 Total: -47.14 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.07 Total: -12.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.52 -9.12 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076456195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.863 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds