Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47527 * 2 1 4 4 C 1.46499 * 119.99989 * 270.00343 * 3 2 1 5 5 C 1.50699 * 109.46873 * 269.99297 * 4 3 2 6 6 H 1.08003 * 120.00259 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00026 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46920 * 60.00188 * 9 7 5 11 11 H 1.48499 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.46810 * 300.00060 * 9 7 5 13 13 C 1.34778 * 120.00135 * 89.99528 * 3 2 1 14 14 O 1.21279 * 120.00310 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99686 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47284 * 179.97438 * 15 13 3 17 17 C 1.46893 * 111.00194 * 162.74569 * 16 15 13 18 18 C 1.53004 * 109.47118 * 196.69569 * 17 16 15 19 19 C 1.52999 * 109.47250 * 185.98089 * 18 17 16 20 20 C 1.53006 * 109.46604 * 65.98255 * 18 17 16 21 21 C 1.46899 * 110.99799 * 286.70174 * 16 15 13 22 22 C 1.53000 * 117.50103 * 3.56357 * 21 16 15 23 23 C 1.52999 * 117.49844 * 294.90333 * 21 16 15 24 24 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47058 * 300.00366 * 1 2 3 26 26 H 1.09001 * 109.46716 * 59.99947 * 1 2 3 27 27 H 1.09003 * 109.47261 * 239.99886 * 2 1 3 28 28 H 1.08999 * 109.47222 * 119.99947 * 2 1 3 29 29 H 1.08997 * 109.47391 * 29.99623 * 4 3 2 30 30 H 1.09006 * 109.47084 * 149.99355 * 4 3 2 31 31 H 0.96999 * 120.00290 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47555 * 59.99383 * 15 13 3 33 33 H 1.08997 * 109.47349 * 299.99126 * 15 13 3 34 34 H 1.08999 * 109.47002 * 76.70270 * 17 16 15 35 35 H 1.09001 * 109.47522 * 316.69539 * 17 16 15 36 36 H 1.08995 * 109.47321 * 305.98498 * 18 17 16 37 37 H 1.09005 * 109.47128 * 304.87826 * 19 18 17 38 38 H 1.08997 * 109.47061 * 64.87729 * 19 18 17 39 39 H 1.08999 * 109.47062 * 184.87718 * 19 18 17 40 40 H 1.08995 * 109.47083 * 60.00097 * 20 18 17 41 41 H 1.09005 * 109.46593 * 179.97438 * 20 18 17 42 42 H 1.08991 * 109.47259 * 299.99892 * 20 18 17 43 43 H 1.09002 * 115.55073 * 149.22745 * 21 16 15 44 44 H 1.09005 * 117.49809 * 359.97438 * 22 21 16 45 45 H 1.08999 * 117.50581 * 145.01945 * 22 21 16 46 46 H 1.09001 * 117.49607 * 214.97727 * 23 21 16 47 47 H 1.09001 * 117.50131 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9133 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1605 2.7946 -4.7041 12 1 6.8411 2.6188 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2058 3.5889 17 6 1.7100 1.7252 4.8402 18 6 1.6974 2.8585 5.8681 19 6 1.2105 2.3201 7.2149 20 6 0.7572 3.9679 5.3923 21 6 3.7633 2.3727 3.7324 22 6 4.6587 1.6894 2.6970 23 6 4.5808 1.1400 4.1236 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6750 3.5153 -4.4445 32 1 2.6226 0.4186 2.5299 33 1 0.9444 1.0116 2.5302 34 1 2.2947 0.8906 5.2269 35 1 0.6885 1.3960 4.6498 36 1 2.7049 3.2591 5.9797 37 1 0.2394 1.8421 7.0856 38 1 1.9264 1.5914 7.5951 39 1 1.1188 3.1432 7.9235 40 1 -0.2503 3.5673 5.2807 41 1 0.7479 4.7751 6.1248 42 1 1.1040 4.3515 4.4329 43 1 4.0895 3.3373 4.1215 44 1 4.1701 1.1156 1.9094 45 1 5.5742 2.2041 2.4052 46 1 5.4451 1.2937 4.7698 47 1 4.0410 0.2053 4.2748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076904143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = -5.374362 kcal Electronic energy + Delta-G solvation = -23811.865543 eV Core-core repulsion = 20609.798378 eV Total energy + Delta-G solvation = -3202.067165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94579 -37.99637 -35.71517 -35.07142 -32.91904 -32.47127 -30.04161 -28.49362 -27.07564 -26.46235 -24.71157 -22.99206 -22.57581 -22.09232 -20.85229 -19.18006 -18.08739 -16.94016 -16.49325 -16.22697 -15.63368 -15.13395 -14.77213 -14.33378 -14.12169 -13.84829 -13.68048 -13.30335 -13.02924 -12.90999 -12.54842 -12.34034 -12.06513 -11.94285 -11.81149 -11.72464 -11.33421 -11.23498 -11.12499 -11.02382 -10.91774 -10.85187 -10.67862 -10.56102 -10.47781 -10.35565 -10.09576 -9.88630 -9.59353 -8.79998 -8.39409 -8.00534 -7.56067 -6.00189 -4.04653 3.33298 3.37903 3.40174 3.55528 3.66195 4.01584 4.25679 4.48237 4.74874 4.94237 5.02359 5.08164 5.09825 5.18064 5.20707 5.30430 5.34326 5.43735 5.47889 5.53675 5.59418 5.63583 5.68042 5.74132 5.76566 5.84240 5.88763 5.98788 6.04822 6.11191 6.16325 6.25894 6.27743 6.34026 6.38308 6.50637 6.54725 6.99546 7.20523 7.23397 7.52021 7.64127 7.97144 8.28957 8.53379 8.95908 9.25437 9.60523 11.07735 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.004677 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.020964 B = 5985.334346 C = 6515.051101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.603 5.603 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.515 6.515 15 C 0.029 3.971 16 N -0.485 5.485 17 C 0.061 3.939 18 C -0.088 4.088 19 C -0.146 4.146 20 C -0.140 4.140 21 C 0.043 3.957 22 C -0.170 4.170 23 C -0.225 4.225 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.121 0.879 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -6.704 17.493 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.337 5.337 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.389 6.389 15 C -0.102 4.102 16 N -0.207 5.207 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.204 4.204 20 C -0.198 4.198 21 C -0.066 4.066 22 C -0.207 4.207 23 C -0.265 4.265 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.139 0.861 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.729 -5.495 17.184 18.651 hybrid contribution 1.327 -1.124 -0.324 1.769 sum -3.402 -6.619 16.861 18.430 Atomic orbital electron populations 1.22225 0.96909 1.01253 1.02347 1.21375 0.93470 0.84560 1.02335 1.48259 1.64662 1.13090 1.07707 1.19205 0.96023 0.93623 0.78129 1.21390 0.96981 1.31729 1.06114 0.92666 1.24918 0.97662 0.95009 0.96444 1.69922 1.35637 1.33525 1.14345 0.86602 0.85056 0.78179 0.77831 1.20337 1.21220 1.20225 1.20002 0.78954 0.87227 0.84469 1.90673 1.44068 1.17504 1.86679 1.22223 1.01810 0.94600 0.91562 1.61596 1.08931 1.47368 1.02850 1.22248 0.98928 0.95987 0.89446 1.21025 1.00295 0.95896 0.93476 1.21825 1.00943 1.00814 0.96796 1.21744 0.98592 0.97401 1.02016 1.22617 0.84967 0.95756 1.03228 1.23287 1.02155 1.03297 0.91999 1.23456 1.03989 0.99292 0.99719 0.92323 0.93133 0.91982 0.90060 0.92236 0.95256 0.93962 0.92736 0.92304 0.88959 0.94513 0.91125 0.91096 0.92855 0.93048 0.92640 0.93439 0.93707 0.90898 0.86096 0.88211 0.88360 0.88858 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.72 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.52 -14.79 9.39 -34.44 -0.32 -15.12 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.52 5.68 -10.99 -0.06 10.46 16 14 O -0.51 -12.96 14.84 5.56 0.08 -12.87 16 15 C 0.03 0.45 3.55 -4.97 -0.02 0.43 16 16 N -0.49 -7.20 3.79 -228.09 -0.86 -8.06 16 17 C 0.06 0.70 4.30 -3.83 -0.02 0.69 16 18 C -0.09 -0.93 2.95 -90.61 -0.27 -1.20 16 19 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 20 C -0.14 -1.60 9.09 37.16 0.34 -1.26 16 21 C 0.04 0.65 4.81 -67.71 -0.33 0.32 16 22 C -0.17 -2.79 8.49 -26.69 -0.23 -3.02 16 23 C -0.23 -2.87 9.18 -26.69 -0.24 -3.12 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 29 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 0.85 5.28 -51.93 -0.27 0.57 16 33 H 0.09 1.24 6.73 -51.93 -0.35 0.89 16 34 H 0.04 0.40 6.69 -51.93 -0.35 0.05 16 35 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 36 H 0.07 0.80 7.37 -51.93 -0.38 0.42 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.03 7.78 -51.93 -0.40 0.63 16 43 H 0.12 1.81 8.01 -51.93 -0.42 1.40 16 44 H 0.10 1.84 4.91 -51.93 -0.25 1.58 16 45 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 1.04 7.17 -51.93 -0.37 0.66 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -32.00 366.91 -9.02 -41.03 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.48 Total: 1.31 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.57 Total: -4.73 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.56 Total: -47.20 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.00 -9.02 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076904143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.653 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds