Wall clock time and date at job start Tue Mar 31 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47527 * 2 1 4 4 C 1.46499 * 119.99989 * 270.00343 * 3 2 1 5 5 C 1.50699 * 109.46873 * 269.99297 * 4 3 2 6 6 H 1.08003 * 120.00259 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00026 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00078 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46920 * 60.00188 * 9 7 5 11 11 H 1.48499 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.46810 * 300.00060 * 9 7 5 13 13 C 1.34778 * 120.00135 * 89.99528 * 3 2 1 14 14 O 1.21279 * 120.00310 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99686 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47284 * 179.97438 * 15 13 3 17 17 C 1.46893 * 111.00194 * 162.74569 * 16 15 13 18 18 C 1.53004 * 109.47118 * 196.69569 * 17 16 15 19 19 C 1.52999 * 109.47250 * 185.98089 * 18 17 16 20 20 C 1.53006 * 109.46604 * 65.98255 * 18 17 16 21 21 C 1.46899 * 110.99799 * 286.70174 * 16 15 13 22 22 C 1.53000 * 117.50103 * 3.56357 * 21 16 15 23 23 C 1.52999 * 117.49844 * 294.90333 * 21 16 15 24 24 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47058 * 300.00366 * 1 2 3 26 26 H 1.09001 * 109.46716 * 59.99947 * 1 2 3 27 27 H 1.09003 * 109.47261 * 239.99886 * 2 1 3 28 28 H 1.08999 * 109.47222 * 119.99947 * 2 1 3 29 29 H 1.08997 * 109.47391 * 29.99623 * 4 3 2 30 30 H 1.09006 * 109.47084 * 149.99355 * 4 3 2 31 31 H 0.96999 * 120.00290 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47555 * 59.99383 * 15 13 3 33 33 H 1.08997 * 109.47349 * 299.99126 * 15 13 3 34 34 H 1.08999 * 109.47002 * 76.70270 * 17 16 15 35 35 H 1.09001 * 109.47522 * 316.69539 * 17 16 15 36 36 H 1.08995 * 109.47321 * 305.98498 * 18 17 16 37 37 H 1.09005 * 109.47128 * 304.87826 * 19 18 17 38 38 H 1.08997 * 109.47061 * 64.87729 * 19 18 17 39 39 H 1.08999 * 109.47062 * 184.87718 * 19 18 17 40 40 H 1.08995 * 109.47083 * 60.00097 * 20 18 17 41 41 H 1.09005 * 109.46593 * 179.97438 * 20 18 17 42 42 H 1.08991 * 109.47259 * 299.99892 * 20 18 17 43 43 H 1.09002 * 115.55073 * 149.22745 * 21 16 15 44 44 H 1.09005 * 117.49809 * 359.97438 * 22 21 16 45 45 H 1.08999 * 117.50581 * 145.01945 * 22 21 16 46 46 H 1.09001 * 117.49607 * 214.97727 * 23 21 16 47 47 H 1.09001 * 117.50131 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3428 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9133 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1605 2.7946 -4.7041 12 1 6.8411 2.6188 -2.3829 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2058 3.5889 17 6 1.7100 1.7252 4.8402 18 6 1.6974 2.8585 5.8681 19 6 1.2105 2.3201 7.2149 20 6 0.7572 3.9679 5.3923 21 6 3.7633 2.3727 3.7324 22 6 4.6587 1.6894 2.6970 23 6 4.5808 1.1400 4.1236 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6750 3.5153 -4.4445 32 1 2.6226 0.4186 2.5299 33 1 0.9444 1.0116 2.5302 34 1 2.2947 0.8906 5.2269 35 1 0.6885 1.3960 4.6498 36 1 2.7049 3.2591 5.9797 37 1 0.2394 1.8421 7.0856 38 1 1.9264 1.5914 7.5951 39 1 1.1188 3.1432 7.9235 40 1 -0.2503 3.5673 5.2807 41 1 0.7479 4.7751 6.1248 42 1 1.1040 4.3515 4.4329 43 1 4.0895 3.3373 4.1215 44 1 4.1701 1.1156 1.9094 45 1 5.5742 2.2041 2.4052 46 1 5.4451 1.2937 4.7698 47 1 4.0410 0.2053 4.2748 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076904143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:06 Heat of formation + Delta-G solvation = -25.034845 kcal Electronic energy + Delta-G solvation = -23812.718085 eV Core-core repulsion = 20609.798378 eV Total energy + Delta-G solvation = -3202.919707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30650 -39.39618 -36.83653 -36.55896 -34.92249 -33.72191 -31.59334 -29.97541 -28.14931 -27.86758 -25.81994 -24.76188 -24.03209 -23.22201 -22.01282 -20.18966 -19.63311 -18.61141 -18.03684 -17.85963 -17.16489 -16.48515 -16.09249 -15.92816 -15.27059 -15.17870 -14.74179 -14.63536 -14.33328 -14.28828 -13.95383 -13.57261 -13.36741 -13.21999 -13.10962 -12.93546 -12.75553 -12.73718 -12.63116 -12.44684 -12.31664 -12.12301 -12.00976 -11.84431 -11.73602 -11.71560 -11.44591 -11.35408 -11.04454 -10.63295 -10.44295 -9.35362 -9.12314 -8.20590 -6.35213 1.34825 1.39142 1.46319 1.97120 2.24631 2.41714 2.86952 2.98371 3.08450 3.74618 3.76400 3.93495 3.97465 4.08003 4.09425 4.16031 4.26984 4.33086 4.38656 4.46493 4.65111 4.67136 4.74508 4.77433 4.89204 4.91393 4.94935 4.96352 5.00297 5.07234 5.12163 5.13419 5.15020 5.21733 5.25036 5.34994 5.39463 5.53525 5.60064 5.60778 5.89243 6.01526 6.09932 6.19794 6.73303 6.90457 7.31461 7.64254 8.86021 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.004677 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.020964 B = 5985.334346 C = 6515.051101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.267 3.733 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.501 3.499 14 O -0.572 6.572 15 C 0.046 3.954 16 N -0.505 5.505 17 C 0.063 3.937 18 C -0.086 4.086 19 C -0.139 4.139 20 C -0.137 4.137 21 C 0.036 3.964 22 C -0.202 4.202 23 C -0.181 4.181 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.018 0.982 30 H -0.008 1.008 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.113 0.887 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 -9.405 19.925 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.342 5.342 4 C 0.145 3.855 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.184 1.184 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.290 3.710 14 O -0.451 6.451 15 C -0.085 4.085 16 N -0.228 5.228 17 C -0.064 4.064 18 C -0.105 4.105 19 C -0.197 4.197 20 C -0.194 4.194 21 C -0.073 4.073 22 C -0.240 4.240 23 C -0.220 4.220 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.036 0.964 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.784 -8.249 19.641 21.834 hybrid contribution 1.295 -0.231 -1.073 1.697 sum -3.489 -8.480 18.569 20.709 Atomic orbital electron populations 1.22152 0.94604 1.03441 1.01646 1.21699 0.95330 0.81653 1.03537 1.48275 1.64816 1.14953 1.06188 1.18605 0.95078 0.91307 0.80484 1.21657 0.97860 1.31735 1.06308 0.92990 1.25835 1.02197 0.94576 0.96501 1.70051 1.37744 1.34359 1.14796 0.85522 0.79275 0.79016 0.77329 1.18431 1.20379 1.20451 1.21018 0.77300 0.86765 0.85961 1.90639 1.46545 1.20250 1.87624 1.22074 1.03705 0.94179 0.88530 1.61504 1.08949 1.48173 1.04150 1.22354 0.99528 0.96615 0.87877 1.21017 0.99561 0.95362 0.94571 1.21761 1.01519 1.01190 0.95225 1.21695 0.99094 0.98201 1.00445 1.22578 0.85401 0.96632 1.02685 1.23166 1.02124 1.05123 0.93557 1.23496 1.03574 0.98664 0.96295 0.88590 0.92165 0.94382 0.91164 0.88695 0.96411 0.98947 0.92506 0.90420 0.86191 0.92820 0.89844 0.92088 0.92009 0.92058 0.92186 0.92744 0.92843 0.94376 0.87044 0.90395 0.90179 0.86881 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.26 16 2 C 0.10 3.09 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.24 2.46 -826.16 -2.03 -28.27 16 4 C 0.27 14.78 5.16 85.63 0.44 15.22 16 5 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 9 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 13 C 0.50 21.21 5.68 87.66 0.50 21.71 16 14 O -0.57 -30.45 14.84 -3.03 -0.04 -30.49 16 15 C 0.05 1.33 3.55 85.56 0.30 1.64 16 16 N -0.51 -14.31 3.79 -875.53 -3.32 -17.63 16 17 C 0.06 1.24 4.30 86.31 0.37 1.61 16 18 C -0.09 -1.63 2.95 -10.79 -0.03 -1.66 16 19 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 20 C -0.14 -3.00 9.09 71.98 0.65 -2.34 16 21 C 0.04 1.06 4.81 44.92 0.22 1.27 16 22 C -0.20 -6.66 8.49 30.62 0.26 -6.40 16 23 C -0.18 -4.13 9.18 30.62 0.28 -3.85 16 24 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.06 1.39 7.22 -2.39 -0.02 1.37 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 28 H 0.09 2.26 6.44 -2.39 -0.02 2.24 16 29 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 30 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.08 1.99 5.28 -2.39 -0.01 1.98 16 33 H 0.12 2.82 6.73 -2.39 -0.02 2.80 16 34 H 0.05 0.91 6.69 -2.39 -0.02 0.89 16 35 H 0.08 1.46 7.69 -2.39 -0.02 1.44 16 36 H 0.06 1.28 7.37 -2.39 -0.02 1.26 16 37 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.04 1.09 7.78 -2.39 -0.02 1.07 16 43 H 0.11 3.41 8.01 -2.39 -0.02 3.39 16 44 H 0.08 2.90 4.91 -2.38 -0.01 2.88 16 45 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 46 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.11 2.04 7.17 -2.39 -0.02 2.02 16 Total: -1.00 -74.88 366.91 3.45 -71.44 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.92 Total: 18.38 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.61 Total: -4.03 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -5.06 Total: -103.11 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.04 Total: -30.49 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.88 3.45 -71.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076904143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.402 kcal (2) G-P(sol) polarization free energy of solvation -74.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds