Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46839 * 2 1 4 4 C 1.46497 * 119.99827 * 269.99848 * 3 2 1 5 5 C 1.50706 * 109.47023 * 270.00256 * 4 3 2 6 6 H 1.08001 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00310 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00231 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47451 * 89.99483 * 9 7 5 11 11 H 1.48502 * 109.47304 * 209.99996 * 9 7 5 12 12 H 1.48501 * 109.46694 * 329.99512 * 9 7 5 13 13 C 1.34769 * 120.00020 * 89.99973 * 3 2 1 14 14 O 1.21281 * 120.00475 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00120 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47135 * 187.98279 * 15 13 3 17 17 C 1.46903 * 110.99864 * 84.53296 * 16 15 13 18 18 C 1.52999 * 109.46959 * 301.55935 * 17 16 15 19 19 C 1.52989 * 109.47291 * 61.56593 * 17 16 15 20 20 C 1.46897 * 111.00021 * 208.48681 * 16 15 13 21 21 C 1.53782 * 113.68939 * 326.97943 * 20 16 15 22 22 C 1.53787 * 87.07896 * 139.99597 * 21 20 16 23 23 C 1.53776 * 113.61508 * 64.51828 * 20 16 15 24 24 H 1.09004 * 109.47097 * 299.99906 * 1 2 3 25 25 H 1.09000 * 109.47183 * 60.00159 * 1 2 3 26 26 H 1.08993 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47293 * 240.00160 * 2 1 3 28 28 H 1.09004 * 109.47136 * 119.99329 * 2 1 3 29 29 H 1.08996 * 109.47036 * 29.99935 * 4 3 2 30 30 H 1.09001 * 109.47113 * 150.00291 * 4 3 2 31 31 H 0.96999 * 119.99782 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46736 * 67.98224 * 15 13 3 33 33 H 1.08999 * 109.46952 * 307.98441 * 15 13 3 34 34 H 1.09002 * 109.46845 * 181.56774 * 17 16 15 35 35 H 1.09005 * 109.47062 * 63.06979 * 18 17 16 36 36 H 1.09002 * 109.46819 * 183.06017 * 18 17 16 37 37 H 1.08995 * 109.47569 * 303.06706 * 18 17 16 38 38 H 1.08999 * 109.47496 * 59.99996 * 19 17 16 39 39 H 1.09000 * 109.47327 * 180.02562 * 19 17 16 40 40 H 1.09002 * 109.47324 * 299.99888 * 19 17 16 41 41 H 1.09010 * 112.84768 * 195.71554 * 20 16 15 42 42 H 1.09003 * 113.61517 * 254.53831 * 21 20 16 43 43 H 1.09000 * 113.61377 * 25.44821 * 21 20 16 44 44 H 1.09001 * 113.61147 * 220.01837 * 22 21 20 45 45 H 1.08999 * 113.61575 * 89.11898 * 22 21 20 46 46 H 1.08994 * 113.61435 * 334.48012 * 23 20 16 47 47 H 1.09004 * 113.61551 * 105.30472 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9134 2.0964 -3.4171 10 1 5.9761 0.8759 -4.2606 11 1 6.3929 3.2640 -4.1994 12 1 6.7735 1.9157 -2.2201 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.1243 2.2596 3.5821 17 6 0.8700 2.9928 3.7995 18 6 0.4839 3.7341 2.5180 19 6 -0.2389 2.0070 4.1724 20 6 2.5567 1.5802 4.8106 21 6 2.0242 0.1436 4.9424 22 6 3.4079 -0.2346 5.4967 23 6 3.9632 0.9662 4.7125 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1384 31 1 3.6757 3.5176 -4.4431 32 1 2.7174 0.5028 2.5945 33 1 0.9843 0.8891 2.4705 34 1 1.0047 3.7112 4.6082 35 1 0.2962 3.0122 1.7232 36 1 -0.4171 4.3214 2.6955 37 1 1.2972 4.3967 2.2224 38 1 0.0362 1.4789 5.0854 39 1 -1.1697 2.5510 4.3334 40 1 -0.3736 1.2886 3.3638 41 1 2.4059 2.1856 5.7046 42 1 1.2194 0.0413 5.6704 43 1 1.7936 -0.3260 3.9861 44 1 3.7736 -1.1969 5.1384 45 1 3.4898 -0.1255 6.5781 46 1 4.2626 0.7214 3.6935 47 1 4.7239 1.5287 5.2538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077357913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = -0.936890 kcal Electronic energy + Delta-G solvation = -24369.728431 eV Core-core repulsion = 21167.853690 eV Total energy + Delta-G solvation = -3201.874742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45728 -38.47928 -36.04013 -34.98878 -32.75763 -30.99303 -30.03948 -28.23497 -27.19877 -26.29903 -25.40185 -23.79262 -22.98562 -22.51188 -19.90400 -19.31640 -17.77954 -17.14554 -16.31818 -16.28226 -15.80309 -15.19224 -14.77488 -14.26647 -13.99321 -13.78896 -13.43276 -13.27525 -12.89323 -12.58803 -12.49035 -12.30277 -12.18505 -12.11954 -11.99261 -11.89214 -11.62126 -11.19788 -11.08280 -11.07258 -10.85256 -10.77706 -10.69831 -10.57299 -10.42783 -10.37683 -10.12343 -10.06111 -9.53617 -8.70112 -8.38008 -7.93387 -7.51323 -5.98624 -4.02768 3.33310 3.40090 3.44511 3.61039 3.70612 4.26718 4.50281 4.56497 4.63391 4.78646 4.87804 5.01440 5.18704 5.25179 5.29351 5.35460 5.39101 5.43884 5.53133 5.59991 5.63661 5.68903 5.69568 5.76047 5.80317 5.82294 5.87423 5.99275 6.04072 6.06063 6.08711 6.11939 6.26135 6.35564 6.42773 6.51494 6.84388 7.05495 7.27086 7.34752 7.53403 7.67773 7.99309 8.31188 8.57376 8.98638 9.30743 9.62709 11.09251 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005155 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.635528 B = 5430.467656 C = 5846.415281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.604 5.604 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.516 6.516 15 C 0.029 3.971 16 N -0.501 5.501 17 C 0.083 3.917 18 C -0.146 4.146 19 C -0.190 4.190 20 C 0.068 3.932 21 C -0.179 4.179 22 C -0.142 4.142 23 C -0.133 4.133 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -7.695 16.789 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.338 5.338 4 C 0.130 3.870 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.391 6.391 15 C -0.102 4.102 16 N -0.222 5.222 17 C -0.025 4.025 18 C -0.203 4.203 19 C -0.248 4.248 20 C -0.041 4.041 21 C -0.218 4.218 22 C -0.180 4.180 23 C -0.171 4.171 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.216 -6.582 16.460 18.785 hybrid contribution 0.293 -0.922 -0.222 0.992 sum -5.923 -7.504 16.237 18.843 Atomic orbital electron populations 1.22237 0.97087 1.01239 1.02192 1.21350 0.93280 0.84678 1.02321 1.48256 1.64739 1.13051 1.07741 1.19198 0.96018 0.93586 0.78207 1.21454 0.97026 1.31583 1.06054 0.92581 1.24924 0.97715 0.94999 0.96474 1.69937 1.35625 1.33613 1.14359 0.86528 0.84921 0.77598 0.78560 1.20740 1.21141 1.19919 1.20127 0.78902 0.87159 0.84552 1.90634 1.44199 1.17568 1.86731 1.22238 1.01580 0.95167 0.91218 1.61741 1.30499 1.26474 1.03535 1.21693 0.86946 0.94997 0.98863 1.22095 1.01405 1.00800 0.96023 1.22636 1.00016 1.00678 1.01514 1.23209 0.96050 0.91942 0.92863 1.23832 0.97264 0.98940 1.01738 1.22740 0.96737 0.98683 0.99805 1.23096 0.96643 0.96307 1.01099 0.93329 0.91984 0.92320 0.90065 0.92256 0.95331 0.93984 0.92830 0.88922 0.91654 0.90238 0.93099 0.93576 0.89476 0.92278 0.92333 0.92462 0.88114 0.91647 0.89595 0.91450 0.90371 0.89597 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.17 37.16 0.38 -1.91 16 2 C 0.11 1.75 5.83 -4.04 -0.02 1.73 16 3 N -0.60 -12.75 2.46 -175.05 -0.43 -13.18 16 4 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 5 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.51 10.52 5.60 -10.98 -0.06 10.46 16 14 O -0.52 -12.91 13.25 5.56 0.07 -12.84 16 15 C 0.03 0.44 1.84 -4.97 -0.01 0.43 16 16 N -0.50 -7.40 4.18 -219.18 -0.92 -8.32 16 17 C 0.08 1.12 2.96 -67.72 -0.20 0.92 16 18 C -0.15 -2.33 7.69 37.16 0.29 -2.05 16 19 C -0.19 -2.06 8.20 37.15 0.30 -1.75 16 20 C 0.07 0.80 3.34 -66.90 -0.22 0.58 16 21 C -0.18 -1.75 5.69 -25.92 -0.15 -1.89 16 22 C -0.14 -1.31 8.08 -25.91 -0.21 -1.52 16 23 C -0.13 -1.55 7.50 -25.92 -0.19 -1.75 16 24 H 0.05 0.63 7.11 -51.93 -0.37 0.26 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.81 6.65 -51.93 -0.35 0.46 16 29 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 1.35 4.90 -51.93 -0.25 1.10 16 33 H 0.07 0.90 3.94 -51.93 -0.20 0.69 16 34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.05 0.89 5.97 -51.93 -0.31 0.58 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.69 6.53 -51.93 -0.34 1.35 16 38 H 0.06 0.57 5.56 -51.93 -0.29 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.65 6.05 -51.93 -0.31 0.34 16 41 H 0.10 1.07 8.03 -51.92 -0.42 0.66 16 42 H 0.06 0.57 7.18 -51.93 -0.37 0.20 16 43 H 0.09 0.89 5.74 -51.93 -0.30 0.59 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.16 6.74 -51.93 -0.35 0.81 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -32.27 350.09 -8.84 -41.11 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.01 Total: 0.83 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.55 Total: -3.87 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.61 Total: -47.67 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.27 -8.84 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077357913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.176 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds