Wall clock time and date at job start Tue Mar 31 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46839 * 2 1 4 4 C 1.46497 * 119.99827 * 269.99848 * 3 2 1 5 5 C 1.50706 * 109.47023 * 270.00256 * 4 3 2 6 6 H 1.08001 * 119.99863 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00310 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00231 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47451 * 89.99483 * 9 7 5 11 11 H 1.48502 * 109.47304 * 209.99996 * 9 7 5 12 12 H 1.48501 * 109.46694 * 329.99512 * 9 7 5 13 13 C 1.34769 * 120.00020 * 89.99973 * 3 2 1 14 14 O 1.21281 * 120.00475 * 179.97438 * 13 3 2 15 15 C 1.50708 * 120.00120 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47135 * 187.98279 * 15 13 3 17 17 C 1.46903 * 110.99864 * 84.53296 * 16 15 13 18 18 C 1.52999 * 109.46959 * 301.55935 * 17 16 15 19 19 C 1.52989 * 109.47291 * 61.56593 * 17 16 15 20 20 C 1.46897 * 111.00021 * 208.48681 * 16 15 13 21 21 C 1.53782 * 113.68939 * 326.97943 * 20 16 15 22 22 C 1.53787 * 87.07896 * 139.99597 * 21 20 16 23 23 C 1.53776 * 113.61508 * 64.51828 * 20 16 15 24 24 H 1.09004 * 109.47097 * 299.99906 * 1 2 3 25 25 H 1.09000 * 109.47183 * 60.00159 * 1 2 3 26 26 H 1.08993 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47293 * 240.00160 * 2 1 3 28 28 H 1.09004 * 109.47136 * 119.99329 * 2 1 3 29 29 H 1.08996 * 109.47036 * 29.99935 * 4 3 2 30 30 H 1.09001 * 109.47113 * 150.00291 * 4 3 2 31 31 H 0.96999 * 119.99782 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46736 * 67.98224 * 15 13 3 33 33 H 1.08999 * 109.46952 * 307.98441 * 15 13 3 34 34 H 1.09002 * 109.46845 * 181.56774 * 17 16 15 35 35 H 1.09005 * 109.47062 * 63.06979 * 18 17 16 36 36 H 1.09002 * 109.46819 * 183.06017 * 18 17 16 37 37 H 1.08995 * 109.47569 * 303.06706 * 18 17 16 38 38 H 1.08999 * 109.47496 * 59.99996 * 19 17 16 39 39 H 1.09000 * 109.47327 * 180.02562 * 19 17 16 40 40 H 1.09002 * 109.47324 * 299.99888 * 19 17 16 41 41 H 1.09010 * 112.84768 * 195.71554 * 20 16 15 42 42 H 1.09003 * 113.61517 * 254.53831 * 21 20 16 43 43 H 1.09000 * 113.61377 * 25.44821 * 21 20 16 44 44 H 1.09001 * 113.61147 * 220.01837 * 22 21 20 45 45 H 1.08999 * 113.61575 * 89.11898 * 22 21 20 46 46 H 1.08994 * 113.61435 * 334.48012 * 23 20 16 47 47 H 1.09004 * 113.61551 * 105.30472 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0957 7 6 4.1494 2.3905 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9134 2.0964 -3.4171 10 1 5.9761 0.8759 -4.2606 11 1 6.3929 3.2640 -4.1994 12 1 6.7735 1.9157 -2.2201 13 6 2.2429 2.0167 1.1671 14 8 2.6476 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.1243 2.2596 3.5821 17 6 0.8700 2.9928 3.7995 18 6 0.4839 3.7341 2.5180 19 6 -0.2389 2.0070 4.1724 20 6 2.5567 1.5802 4.8106 21 6 2.0242 0.1436 4.9424 22 6 3.4079 -0.2346 5.4967 23 6 3.9632 0.9662 4.7125 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.5817 1.6877 -2.0283 30 1 2.0955 3.1411 -1.1384 31 1 3.6757 3.5176 -4.4431 32 1 2.7174 0.5028 2.5945 33 1 0.9843 0.8891 2.4705 34 1 1.0047 3.7112 4.6082 35 1 0.2962 3.0122 1.7232 36 1 -0.4171 4.3214 2.6955 37 1 1.2972 4.3967 2.2224 38 1 0.0362 1.4789 5.0854 39 1 -1.1697 2.5510 4.3334 40 1 -0.3736 1.2886 3.3638 41 1 2.4059 2.1856 5.7046 42 1 1.2194 0.0413 5.6704 43 1 1.7936 -0.3260 3.9861 44 1 3.7736 -1.1969 5.1384 45 1 3.4898 -0.1255 6.5781 46 1 4.2626 0.7214 3.6935 47 1 4.7239 1.5287 5.2538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077357913.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:51 Heat of formation + Delta-G solvation = -21.765588 kcal Electronic energy + Delta-G solvation = -24370.631631 eV Core-core repulsion = 21167.853690 eV Total energy + Delta-G solvation = -3202.777942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61362 -39.89428 -37.20843 -36.54502 -34.89519 -32.18311 -31.57879 -29.75326 -28.32129 -27.89377 -26.26836 -24.96954 -24.56712 -23.99310 -21.11876 -20.36667 -19.15233 -18.65840 -18.20380 -17.69282 -17.09289 -16.58363 -16.15707 -15.85222 -15.34222 -15.12894 -14.64000 -14.43077 -14.26611 -14.14479 -13.67643 -13.44831 -13.40185 -13.28084 -13.17624 -13.16789 -13.02903 -12.81520 -12.66455 -12.48412 -12.31938 -12.20006 -12.14785 -11.88245 -11.74600 -11.65583 -11.56019 -11.25440 -10.98868 -10.63051 -10.34910 -9.31947 -9.01084 -8.20651 -6.35513 1.34989 1.38440 1.48693 2.00097 2.27884 2.42898 3.04521 3.08287 3.70104 3.76833 3.84016 3.93897 4.05951 4.09566 4.11995 4.20947 4.31659 4.36992 4.42810 4.44734 4.61681 4.71503 4.72234 4.84810 4.87240 4.89142 4.92939 4.96351 4.98857 5.06340 5.07396 5.14441 5.15791 5.22624 5.27550 5.35224 5.40849 5.47505 5.55095 5.62004 5.91555 6.09618 6.13644 6.34327 6.73625 6.93584 7.31656 7.68619 8.85837 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018506 B = 0.005155 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.635528 B = 5430.467656 C = 5846.415281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.611 5.611 4 C 0.267 3.733 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.571 6.571 15 C 0.050 3.950 16 N -0.530 5.530 17 C 0.085 3.915 18 C -0.139 4.139 19 C -0.179 4.179 20 C 0.064 3.936 21 C -0.169 4.169 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.017 0.983 30 H -0.007 1.007 31 H 0.266 0.734 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 -10.240 19.108 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.344 5.344 4 C 0.146 3.854 5 C -0.578 4.578 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.286 3.714 14 O -0.449 6.449 15 C -0.081 4.081 16 N -0.253 5.253 17 C -0.023 4.023 18 C -0.197 4.197 19 C -0.238 4.238 20 C -0.044 4.044 21 C -0.208 4.208 22 C -0.165 4.165 23 C -0.184 4.184 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.012 0.988 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.649 -9.179 18.802 21.954 hybrid contribution 0.417 -0.055 -0.938 1.028 sum -6.233 -9.233 17.864 21.053 Atomic orbital electron populations 1.22154 0.94733 1.03428 1.01471 1.21676 0.95203 0.81811 1.03491 1.48281 1.64942 1.14914 1.06233 1.18596 0.94970 0.91348 0.80533 1.21715 0.97976 1.31745 1.06355 0.93153 1.25846 1.02304 0.94515 0.96479 1.70060 1.37729 1.34324 1.14810 0.85439 0.79128 0.78228 0.78149 1.18684 1.20639 1.19959 1.21205 0.77397 0.86757 0.86066 1.90612 1.46556 1.20115 1.87640 1.22031 1.03072 0.94588 0.88366 1.61607 1.31675 1.27280 1.04713 1.21688 0.87636 0.95674 0.97319 1.21978 1.00619 1.00037 0.97017 1.22526 0.99233 0.99915 1.02112 1.23371 0.96083 0.93180 0.91746 1.23757 0.98123 0.96741 1.02162 1.22705 0.95759 0.97616 1.00461 1.23138 0.96942 0.98070 1.00218 0.92524 0.94269 0.88545 0.91077 0.88862 0.96453 0.98840 0.92496 0.87707 0.89239 0.89301 0.95208 0.91618 0.93866 0.90300 0.91135 0.92787 0.86739 0.89632 0.89912 0.90893 0.88585 0.92072 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.17 71.98 0.73 -3.33 16 2 C 0.10 3.18 5.83 86.38 0.50 3.68 16 3 N -0.61 -26.67 2.46 -826.13 -2.03 -28.70 16 4 C 0.27 14.91 5.16 85.64 0.44 15.35 16 5 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -57.67 13.29 21.45 0.28 -57.39 16 9 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 13 C 0.50 21.36 5.60 87.66 0.49 21.85 16 14 O -0.57 -30.45 13.25 -3.03 -0.04 -30.49 16 15 C 0.05 1.49 1.84 85.56 0.16 1.65 16 16 N -0.53 -15.17 4.18 -847.36 -3.54 -18.71 16 17 C 0.08 2.16 2.96 44.91 0.13 2.30 16 18 C -0.14 -4.57 7.69 71.98 0.55 -4.01 16 19 C -0.18 -3.28 8.20 71.98 0.59 -2.69 16 20 C 0.06 1.34 3.34 45.44 0.15 1.49 16 21 C -0.17 -2.62 5.69 31.12 0.18 -2.44 16 22 C -0.13 -1.92 8.08 31.12 0.25 -1.66 16 23 C -0.15 -3.16 7.50 31.12 0.23 -2.92 16 24 H 0.06 1.35 7.11 -2.39 -0.02 1.33 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 2.38 8.07 -2.39 -0.02 2.36 16 28 H 0.09 2.30 6.65 -2.39 -0.02 2.29 16 29 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 30 H -0.01 -0.42 7.42 -2.39 -0.02 -0.44 16 31 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.11 2.88 4.90 -2.39 -0.01 2.87 16 33 H 0.09 2.23 3.94 -2.39 -0.01 2.22 16 34 H 0.09 2.10 8.10 -2.39 -0.02 2.08 16 35 H 0.03 1.07 5.97 -2.38 -0.01 1.05 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.79 6.53 -2.39 -0.02 1.78 16 38 H 0.08 1.15 5.56 -2.39 -0.01 1.14 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.03 6.05 -2.39 -0.01 1.01 16 41 H 0.11 2.08 8.03 -2.38 -0.02 2.06 16 42 H 0.09 1.03 7.18 -2.39 -0.02 1.02 16 43 H 0.08 1.36 5.74 -2.39 -0.01 1.35 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.06 1.63 6.74 -2.39 -0.02 1.61 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -75.57 350.09 2.76 -72.81 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.94 Total: 15.96 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 5.12 Total: -1.70 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.28 Total: -104.80 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.04 Total: -30.49 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -75.57 2.76 -72.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077357913.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.040 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds