Wall clock time and date at job start Tue Mar 31 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99883 * 2 1 4 4 C 1.50692 * 109.47694 * 293.95818 * 3 2 1 5 5 H 1.08007 * 119.99839 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00356 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00142 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00087 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46787 * 89.99999 * 8 6 4 10 10 H 1.48493 * 109.47323 * 210.00613 * 8 6 4 11 11 H 1.48499 * 109.47052 * 330.00562 * 8 6 4 12 12 C 1.46889 * 111.00394 * 123.95665 * 2 1 3 13 13 C 1.50706 * 109.47109 * 66.04634 * 12 2 1 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 2 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.53019 * 109.46790 * 274.72208 * 16 15 13 18 18 C 1.52992 * 109.45771 * 164.04678 * 17 16 15 19 19 C 1.52991 * 109.50950 * 315.98477 * 18 17 16 20 20 C 1.53000 * 109.46733 * 112.93679 * 19 18 17 21 21 C 1.53000 * 109.43481 * 284.04295 * 20 19 18 22 22 C 1.52991 * 109.48473 * 75.96433 * 21 20 19 23 23 C 1.52997 * 109.50189 * 247.06544 * 22 21 20 24 24 H 1.09002 * 109.47100 * 296.04283 * 1 2 3 25 25 H 1.09006 * 109.47354 * 56.03832 * 1 2 3 26 26 H 1.08997 * 109.47012 * 176.04034 * 1 2 3 27 27 H 1.09004 * 109.46738 * 53.95746 * 3 2 1 28 28 H 1.09001 * 109.46928 * 173.95169 * 3 2 1 29 29 H 0.96997 * 119.99773 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47256 * 306.05001 * 12 2 1 31 31 H 1.08998 * 109.47820 * 186.04811 * 12 2 1 32 32 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 33 33 H 1.08999 * 109.47194 * 34.71875 * 16 15 13 34 34 H 1.08996 * 109.47175 * 284.04478 * 17 16 15 35 35 H 1.09000 * 109.47246 * 44.04860 * 17 16 15 36 36 H 1.08998 * 109.46268 * 195.97772 * 18 17 16 37 37 H 1.08990 * 109.46034 * 75.99125 * 18 17 16 38 38 H 1.08996 * 109.46812 * 352.93925 * 19 18 17 39 39 H 1.09002 * 109.47143 * 232.93800 * 19 18 17 40 40 H 1.09008 * 109.47830 * 164.05268 * 20 19 18 41 41 H 1.09002 * 109.48767 * 44.03765 * 20 19 18 42 42 H 1.08997 * 109.46891 * 315.95785 * 21 20 19 43 43 H 1.09007 * 109.46950 * 195.96200 * 21 20 19 44 44 H 1.09003 * 109.46488 * 127.05747 * 22 21 20 45 45 H 1.08995 * 109.46217 * 7.07251 * 22 21 20 46 46 H 1.09001 * 109.47457 * 284.01131 * 23 22 21 47 47 H 1.09000 * 109.47303 * 164.01242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2983 5 1 1.0745 1.5114 -2.0487 6 6 2.0276 3.3493 -1.5287 7 7 1.7142 3.9392 -2.6616 8 14 3.0008 4.2759 -0.2311 9 1 4.4532 4.0624 -0.4555 10 1 2.6935 5.7258 -0.3233 11 1 2.6296 3.7760 1.1170 12 6 1.9955 -0.7660 1.1374 13 6 1.6370 -2.2205 0.9726 14 8 1.0047 -2.5831 0.0033 15 7 2.0181 -3.1180 1.9029 16 6 1.6701 -4.5321 1.7424 17 6 0.2666 -4.7783 2.3002 18 6 -0.2559 -6.1227 1.7899 19 6 0.0558 -6.2591 0.2983 20 6 1.0808 -7.3760 0.0917 21 6 2.4679 -6.8760 0.5003 22 6 2.5701 -6.8453 2.0265 23 6 2.6796 -5.3952 2.5021 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5741 -0.8524 26 1 -0.3633 -1.0252 -0.0710 27 1 1.5610 1.9273 0.8310 28 1 3.0797 1.3445 0.1083 29 1 1.9894 4.8551 -2.8238 30 1 1.5611 -0.3873 2.0627 31 1 3.0797 -0.6611 1.1755 32 1 2.5267 -2.8285 2.6766 33 1 1.6917 -4.7938 0.6845 34 1 0.3060 -4.7935 3.3893 35 1 -0.4000 -3.9809 1.9718 36 1 -1.3340 -6.1746 1.9418 37 1 0.2275 -6.9316 2.3374 38 1 0.4622 -5.3193 -0.0753 39 1 -0.8588 -6.5004 -0.2434 40 1 1.0944 -7.6672 -0.9587 41 1 0.8097 -8.2362 0.7038 42 1 2.6230 -5.8719 0.1056 43 1 3.2284 -7.5457 0.0988 44 1 3.4542 -7.3989 2.3426 45 1 1.6807 -7.3033 2.4593 46 1 3.6877 -5.0261 2.3136 47 1 2.4685 -5.3462 3.5703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078636471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:43 Heat of formation + Delta-G solvation = -32.064036 kcal Electronic energy + Delta-G solvation = -23290.941611 eV Core-core repulsion = 20087.717095 eV Total energy + Delta-G solvation = -3203.224516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34054 -38.66429 -36.08342 -34.59983 -33.04171 -32.42791 -31.66614 -28.70847 -27.36072 -26.15591 -25.87687 -23.80189 -22.12308 -21.11890 -20.62232 -19.83934 -19.54145 -17.09777 -16.75287 -16.56745 -15.46976 -15.08345 -14.67306 -14.41658 -14.31982 -14.28986 -14.06361 -13.72262 -13.51719 -13.48735 -12.97600 -12.49670 -12.16558 -12.09404 -11.87057 -11.77392 -11.55174 -11.38196 -11.31253 -11.07603 -10.95765 -10.91017 -10.63839 -10.52547 -10.50344 -10.21743 -9.95586 -9.91734 -9.39326 -9.12172 -8.85950 -8.54775 -7.33169 -6.02094 -3.99393 2.97891 3.25415 3.29079 3.36326 3.37027 4.35010 4.43229 4.59067 4.65912 4.82329 4.89287 4.91691 4.97549 5.02542 5.04178 5.15906 5.17453 5.29698 5.47301 5.49554 5.63597 5.65220 5.68742 5.71280 5.72533 5.78077 5.82406 5.92715 5.96034 6.06229 6.09604 6.17087 6.26031 6.31097 6.34523 6.44072 6.62676 6.80063 6.89869 7.04680 7.54743 7.66351 7.92877 8.05014 8.56915 8.68735 9.08635 9.58807 11.11143 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003332 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.294461 B = 8401.199385 C = 8630.966552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.513 5.513 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.033 3.967 13 C 0.515 3.485 14 O -0.515 6.515 15 N -0.739 5.739 16 C 0.124 3.876 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.136 4.136 20 C -0.118 4.118 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.127 4.127 24 H 0.004 0.996 25 H 0.079 0.921 26 H 0.068 0.932 27 H -0.011 1.011 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.395 0.605 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 -22.429 14.179 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.237 5.237 3 C 0.036 3.964 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.099 4.099 13 C 0.301 3.699 14 O -0.389 6.389 15 N -0.392 5.392 16 C 0.020 3.980 17 C -0.167 4.167 18 C -0.159 4.159 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.170 4.170 22 C -0.160 4.160 23 C -0.165 4.165 24 H 0.022 0.978 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.007 0.993 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.228 0.772 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.619 -22.718 12.907 26.136 hybrid contribution 0.578 1.248 1.866 2.318 sum 1.196 -21.470 14.773 26.089 Atomic orbital electron populations 1.22396 0.87388 1.01602 1.00160 1.61670 1.08282 1.15821 1.37924 1.20237 0.94821 0.83787 0.97555 1.21027 1.35556 0.97170 1.00803 0.89950 1.24900 0.95869 0.97307 0.95309 1.69897 1.46891 1.13262 1.23867 0.86863 0.80880 0.79326 0.82673 1.20140 1.21197 1.19341 1.22000 1.01842 0.91038 0.94997 1.20871 0.78856 0.88129 0.82038 1.90650 1.38196 1.80369 1.29660 1.46190 1.58957 1.07880 1.26160 1.21616 0.93452 0.80037 1.02913 1.22003 0.96757 0.97981 0.99951 1.21785 1.00518 0.97322 0.96296 1.21892 0.99082 1.00101 0.96289 1.21698 0.94828 0.97893 1.01106 1.21871 0.97198 1.02235 0.95744 1.21798 1.02267 0.95881 0.96089 1.21898 0.99227 0.95509 0.99829 0.97751 0.90215 0.91390 0.99328 0.95835 0.92671 0.93188 0.88647 0.77218 0.86918 0.92223 0.91530 0.92325 0.91093 0.89763 0.92289 0.92187 0.92056 0.90691 0.92224 0.92032 0.90669 0.91384 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.03 60.06 0.54 1.24 16 2 N -0.51 -11.37 4.49 -245.83 -1.10 -12.48 16 3 C 0.16 4.00 3.79 -4.98 -0.02 3.98 16 4 C -0.51 -14.79 9.01 -34.45 -0.31 -15.10 16 5 H 0.08 2.65 7.37 -52.48 -0.39 2.26 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 8 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.03 0.56 5.45 -4.98 -0.03 0.53 16 13 C 0.51 8.22 7.46 -10.98 -0.08 8.14 16 14 O -0.51 -10.14 13.97 5.56 0.08 -10.06 16 15 N -0.74 -8.48 5.08 -53.79 -0.27 -8.76 16 16 C 0.12 1.29 1.86 -67.91 -0.13 1.16 16 17 C -0.13 -1.29 5.30 -26.73 -0.14 -1.44 16 18 C -0.12 -1.08 5.48 -26.74 -0.15 -1.23 16 19 C -0.14 -1.36 5.47 -26.74 -0.15 -1.50 16 20 C -0.12 -0.99 5.59 -26.73 -0.15 -1.14 16 21 C -0.13 -1.12 5.47 -26.74 -0.15 -1.26 16 22 C -0.12 -0.88 5.48 -26.74 -0.15 -1.03 16 23 C -0.13 -0.99 5.18 -26.73 -0.14 -1.12 16 24 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.08 1.87 6.76 -51.93 -0.35 1.52 16 26 H 0.07 1.40 5.88 -51.93 -0.31 1.10 16 27 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 28 H 0.02 0.57 7.36 -51.93 -0.38 0.19 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.10 1.46 7.93 -51.93 -0.41 1.05 16 32 H 0.39 3.42 8.60 -40.82 -0.35 3.07 16 33 H 0.11 1.40 2.26 -51.93 -0.12 1.29 16 34 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 35 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.53 4.69 -51.93 -0.24 0.29 16 38 H 0.08 1.07 5.47 -51.93 -0.28 0.78 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 42 H 0.07 0.77 5.47 -51.93 -0.28 0.49 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.51 4.69 -51.93 -0.24 0.27 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.44 7.82 -51.93 -0.41 0.04 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -33.05 344.03 -9.05 -42.10 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.90 Total: 1.27 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.14 Total: -6.88 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.60 Total: -48.44 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.05 -9.05 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.033 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds