Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99883 * 2 1 4 4 C 1.50692 * 109.47694 * 293.95818 * 3 2 1 5 5 H 1.08007 * 119.99839 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00356 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00142 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00087 * 359.97438 * 6 4 3 9 9 H 1.48496 * 109.46787 * 89.99999 * 8 6 4 10 10 H 1.48493 * 109.47323 * 210.00613 * 8 6 4 11 11 H 1.48499 * 109.47052 * 330.00562 * 8 6 4 12 12 C 1.46889 * 111.00394 * 123.95665 * 2 1 3 13 13 C 1.50706 * 109.47109 * 66.04634 * 12 2 1 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 2 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.53019 * 109.46790 * 274.72208 * 16 15 13 18 18 C 1.52992 * 109.45771 * 164.04678 * 17 16 15 19 19 C 1.52991 * 109.50950 * 315.98477 * 18 17 16 20 20 C 1.53000 * 109.46733 * 112.93679 * 19 18 17 21 21 C 1.53000 * 109.43481 * 284.04295 * 20 19 18 22 22 C 1.52991 * 109.48473 * 75.96433 * 21 20 19 23 23 C 1.52997 * 109.50189 * 247.06544 * 22 21 20 24 24 H 1.09002 * 109.47100 * 296.04283 * 1 2 3 25 25 H 1.09006 * 109.47354 * 56.03832 * 1 2 3 26 26 H 1.08997 * 109.47012 * 176.04034 * 1 2 3 27 27 H 1.09004 * 109.46738 * 53.95746 * 3 2 1 28 28 H 1.09001 * 109.46928 * 173.95169 * 3 2 1 29 29 H 0.96997 * 119.99773 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47256 * 306.05001 * 12 2 1 31 31 H 1.08998 * 109.47820 * 186.04811 * 12 2 1 32 32 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 33 33 H 1.08999 * 109.47194 * 34.71875 * 16 15 13 34 34 H 1.08996 * 109.47175 * 284.04478 * 17 16 15 35 35 H 1.09000 * 109.47246 * 44.04860 * 17 16 15 36 36 H 1.08998 * 109.46268 * 195.97772 * 18 17 16 37 37 H 1.08990 * 109.46034 * 75.99125 * 18 17 16 38 38 H 1.08996 * 109.46812 * 352.93925 * 19 18 17 39 39 H 1.09002 * 109.47143 * 232.93800 * 19 18 17 40 40 H 1.09008 * 109.47830 * 164.05268 * 20 19 18 41 41 H 1.09002 * 109.48767 * 44.03765 * 20 19 18 42 42 H 1.08997 * 109.46891 * 315.95785 * 21 20 19 43 43 H 1.09007 * 109.46950 * 195.96200 * 21 20 19 44 44 H 1.09003 * 109.46488 * 127.05747 * 22 21 20 45 45 H 1.08995 * 109.46217 * 7.07251 * 22 21 20 46 46 H 1.09001 * 109.47457 * 284.01131 * 23 22 21 47 47 H 1.09000 * 109.47303 * 164.01242 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0473 -1.2983 5 1 1.0745 1.5114 -2.0487 6 6 2.0276 3.3493 -1.5287 7 7 1.7142 3.9392 -2.6616 8 14 3.0008 4.2759 -0.2311 9 1 4.4532 4.0624 -0.4555 10 1 2.6935 5.7258 -0.3233 11 1 2.6296 3.7760 1.1170 12 6 1.9955 -0.7660 1.1374 13 6 1.6370 -2.2205 0.9726 14 8 1.0047 -2.5831 0.0033 15 7 2.0181 -3.1180 1.9029 16 6 1.6701 -4.5321 1.7424 17 6 0.2666 -4.7783 2.3002 18 6 -0.2559 -6.1227 1.7899 19 6 0.0558 -6.2591 0.2983 20 6 1.0808 -7.3760 0.0917 21 6 2.4679 -6.8760 0.5003 22 6 2.5701 -6.8453 2.0265 23 6 2.6796 -5.3952 2.5021 24 1 -0.3633 0.4512 0.9233 25 1 -0.3634 0.5741 -0.8524 26 1 -0.3633 -1.0252 -0.0710 27 1 1.5610 1.9273 0.8310 28 1 3.0797 1.3445 0.1083 29 1 1.9894 4.8551 -2.8238 30 1 1.5611 -0.3873 2.0627 31 1 3.0797 -0.6611 1.1755 32 1 2.5267 -2.8285 2.6766 33 1 1.6917 -4.7938 0.6845 34 1 0.3060 -4.7935 3.3893 35 1 -0.4000 -3.9809 1.9718 36 1 -1.3340 -6.1746 1.9418 37 1 0.2275 -6.9316 2.3374 38 1 0.4622 -5.3193 -0.0753 39 1 -0.8588 -6.5004 -0.2434 40 1 1.0944 -7.6672 -0.9587 41 1 0.8097 -8.2362 0.7038 42 1 2.6230 -5.8719 0.1056 43 1 3.2284 -7.5457 0.0988 44 1 3.4542 -7.3989 2.3426 45 1 1.6807 -7.3033 2.4593 46 1 3.6877 -5.0261 2.3136 47 1 2.4685 -5.3462 3.5703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078636471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -55.585797 kcal Electronic energy + Delta-G solvation = -23291.961591 eV Core-core repulsion = 20087.717095 eV Total energy + Delta-G solvation = -3204.244496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32818 -39.74857 -37.70257 -35.63694 -34.60287 -33.72017 -32.60199 -30.45160 -28.96968 -26.97143 -26.84290 -25.52448 -22.90124 -22.43555 -21.78737 -21.09421 -20.34152 -19.02752 -17.99484 -17.70804 -16.65229 -16.44104 -16.04211 -15.94242 -15.52451 -15.24674 -15.04158 -14.98685 -14.78521 -14.46084 -14.15379 -13.87277 -13.73516 -13.44637 -12.93124 -12.88614 -12.64614 -12.55407 -12.41374 -12.34109 -12.21469 -12.11820 -11.97529 -11.88407 -11.68823 -11.53059 -11.35550 -10.97438 -10.77508 -10.63843 -10.54637 -9.88034 -9.01773 -8.26947 -6.31878 1.36581 1.39740 1.50114 1.73915 2.18647 2.36394 3.05723 3.31693 3.64143 3.88218 3.92379 4.05503 4.12441 4.19854 4.28326 4.30645 4.35328 4.36736 4.40741 4.42025 4.53148 4.59959 4.77280 4.81928 4.89816 4.94110 4.98395 5.00843 5.04126 5.10608 5.13118 5.19635 5.23692 5.26231 5.33566 5.37345 5.47922 5.51456 5.64234 5.66543 5.68665 5.94938 6.26320 6.56450 6.73897 6.76382 7.31269 7.42043 8.90365 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032277 B = 0.003332 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.294461 B = 8401.199385 C = 8630.966552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.540 5.540 3 C 0.173 3.827 4 C -0.522 4.522 5 H 0.028 0.972 6 C 0.003 3.997 7 N -0.952 5.952 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.244 1.244 12 C 0.032 3.968 13 C 0.515 3.485 14 O -0.562 6.562 15 N -0.717 5.717 16 C 0.118 3.882 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.119 4.119 24 H 0.022 0.978 25 H 0.042 0.958 26 H 0.071 0.929 27 H -0.003 1.003 28 H 0.038 0.962 29 H 0.267 0.733 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.412 0.588 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -23.714 18.160 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.265 5.265 3 C 0.046 3.954 4 C -0.560 4.560 5 H 0.047 0.953 6 C -0.194 4.194 7 N -0.593 5.593 8 Si 0.779 3.221 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.167 1.167 12 C -0.100 4.100 13 C 0.301 3.699 14 O -0.440 6.440 15 N -0.370 5.370 16 C 0.015 3.985 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.174 4.174 20 C -0.152 4.152 21 C -0.171 4.171 22 C -0.156 4.156 23 C -0.157 4.157 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.443 -24.047 16.943 29.518 hybrid contribution -0.045 1.556 0.538 1.647 sum 2.398 -22.491 17.480 28.586 Atomic orbital electron populations 1.22195 0.87563 1.01226 0.99334 1.61465 1.08451 1.14991 1.41577 1.20001 0.95549 0.84906 0.94903 1.21270 1.35133 0.97706 1.01910 0.95341 1.25967 0.97069 0.98309 0.98020 1.70079 1.48610 1.13936 1.26636 0.85589 0.79257 0.77337 0.79959 1.18677 1.20898 1.16705 1.22110 1.03037 0.90818 0.93986 1.20776 0.78557 0.88404 0.82149 1.90646 1.40605 1.80960 1.31807 1.45993 1.57647 1.07896 1.25476 1.21756 0.94743 0.79493 1.02506 1.21958 0.95728 0.97509 1.01044 1.21780 1.00862 0.97385 0.95414 1.21857 0.99147 0.99200 0.97187 1.21686 0.94463 0.97758 1.01267 1.21852 0.97225 1.00961 0.97038 1.21794 1.03466 0.95630 0.94736 1.21868 0.98230 0.95143 1.00487 0.96002 0.93870 0.91074 0.98520 0.94353 0.92394 0.90420 0.86522 0.75118 0.89050 0.90144 0.94767 0.92149 0.88825 0.92962 0.92876 0.92760 0.90138 0.93100 0.91484 0.90409 0.89770 0.91177 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 9.03 127.69 1.15 3.13 16 2 N -0.54 -23.97 4.49 -931.66 -4.18 -28.15 16 3 C 0.17 8.39 3.79 85.55 0.32 8.71 16 4 C -0.52 -31.42 9.01 25.60 0.23 -31.19 16 5 H 0.03 1.96 7.37 -2.91 -0.02 1.94 16 6 C 0.00 0.18 5.47 84.65 0.46 0.65 16 7 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 8 Si 0.96 43.77 27.47 68.60 1.88 45.65 16 9 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 12 C 0.03 1.00 5.45 85.56 0.47 1.47 16 13 C 0.51 16.08 7.46 87.66 0.65 16.74 16 14 O -0.56 -22.88 13.97 -3.03 -0.04 -22.92 16 15 N -0.72 -15.15 5.08 -442.48 -2.25 -17.39 16 16 C 0.12 2.30 1.86 45.00 0.08 2.38 16 17 C -0.12 -2.32 5.30 30.60 0.16 -2.16 16 18 C -0.12 -1.90 5.48 30.59 0.17 -1.74 16 19 C -0.14 -2.74 5.47 30.59 0.17 -2.57 16 20 C -0.11 -1.80 5.59 30.59 0.17 -1.63 16 21 C -0.13 -2.06 5.47 30.59 0.17 -1.89 16 22 C -0.12 -1.33 5.48 30.59 0.17 -1.16 16 23 C -0.12 -1.48 5.18 30.59 0.16 -1.32 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 2.16 6.76 -2.38 -0.02 2.14 16 26 H 0.07 3.05 5.88 -2.39 -0.01 3.04 16 27 H 0.00 -0.13 7.18 -2.38 -0.02 -0.15 16 28 H 0.04 1.75 7.36 -2.39 -0.02 1.73 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 31 H 0.12 3.19 7.93 -2.39 -0.02 3.18 16 32 H 0.41 5.78 8.60 -92.70 -0.80 4.99 16 33 H 0.09 2.30 2.26 -2.39 -0.01 2.30 16 34 H 0.08 1.16 7.82 -2.39 -0.02 1.15 16 35 H 0.03 0.86 8.07 -2.39 -0.02 0.84 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.11 4.69 -2.39 -0.01 1.09 16 38 H 0.05 1.42 5.47 -2.39 -0.01 1.40 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.08 0.97 7.47 -2.39 -0.02 0.95 16 42 H 0.05 1.05 5.47 -2.39 -0.01 1.04 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.80 4.69 -2.39 -0.01 0.79 16 46 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.09 0.76 7.82 -2.39 -0.02 0.74 16 Total: -1.00 -76.31 344.03 0.35 -75.96 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.11 Total: 18.29 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.54 Total: -10.60 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -6.13 Total: -106.38 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.04 Total: -22.92 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -76.31 0.35 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078636471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.370 kcal (2) G-P(sol) polarization free energy of solvation -76.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds