Wall clock time and date at job start Tue Mar 31 2020 05:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99972 * 270.00056 * 3 2 1 5 5 C 1.50694 * 109.47358 * 269.99806 * 4 3 2 6 6 H 1.07999 * 120.00058 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00404 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99674 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47019 * 90.00372 * 9 7 5 11 11 H 1.48503 * 109.47340 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47128 * 330.00375 * 9 7 5 13 13 C 1.34774 * 119.99958 * 89.99909 * 3 2 1 14 14 O 1.21279 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99753 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47267 * 185.61081 * 15 13 3 17 17 C 1.47960 * 111.00361 * 175.68764 * 16 15 13 18 18 C 1.53930 * 86.18020 * 222.42116 * 17 16 15 19 19 C 1.53000 * 113.73596 * 138.07989 * 18 17 16 20 20 C 1.53003 * 113.73181 * 269.36209 * 18 17 16 21 21 C 1.47961 * 110.99658 * 76.32749 * 16 15 13 22 22 C 1.52995 * 113.76136 * 23.26552 * 21 16 15 23 23 C 1.53003 * 113.75967 * 251.90246 * 21 16 15 24 24 H 1.08994 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46930 * 299.99906 * 1 2 3 26 26 H 1.09009 * 109.46972 * 59.99497 * 1 2 3 27 27 H 1.08997 * 109.46930 * 240.00094 * 2 1 3 28 28 H 1.08999 * 109.46945 * 120.00560 * 2 1 3 29 29 H 1.09000 * 109.47326 * 30.00488 * 4 3 2 30 30 H 1.09003 * 109.46947 * 149.99500 * 4 3 2 31 31 H 0.97000 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47550 * 65.60959 * 15 13 3 33 33 H 1.09004 * 109.47649 * 305.60920 * 15 13 3 34 34 H 1.08993 * 113.76113 * 108.09710 * 17 16 15 35 35 H 1.09003 * 113.75773 * 336.73463 * 17 16 15 36 36 H 1.09001 * 109.47176 * 79.50084 * 19 18 17 37 37 H 1.09000 * 109.47137 * 199.49660 * 19 18 17 38 38 H 1.09000 * 109.47018 * 319.50305 * 19 18 17 39 39 H 1.09004 * 109.46925 * 40.49069 * 20 18 17 40 40 H 1.08996 * 109.47578 * 160.49616 * 20 18 17 41 41 H 1.08999 * 109.47184 * 280.49847 * 20 18 17 42 42 H 1.08999 * 109.47238 * 163.73340 * 22 21 16 43 43 H 1.08995 * 109.47466 * 283.73770 * 22 21 16 44 44 H 1.08999 * 109.47254 * 43.73925 * 22 21 16 45 45 H 1.09008 * 109.46936 * 323.44502 * 23 21 16 46 46 H 1.08995 * 109.46950 * 83.43982 * 23 21 16 47 47 H 1.08991 * 109.46976 * 203.44403 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9135 2.0967 -3.4168 10 1 5.9775 0.8754 -4.2591 11 1 6.3921 3.2639 -4.2003 12 1 6.7736 1.9179 -2.2195 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.1808 2.2456 3.5856 17 6 1.8430 1.6105 4.8786 18 6 1.1402 2.9347 5.2281 19 6 -0.2075 2.7505 5.9284 20 6 2.0471 3.9458 5.9325 21 6 1.0239 3.1595 3.7097 22 6 -0.2666 2.6065 3.1017 23 6 1.3231 4.5955 3.2744 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5817 1.6878 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6751 3.5162 -4.4440 32 1 2.6920 0.4763 2.5746 33 1 0.9715 0.9242 2.4879 34 1 2.7106 1.3957 5.5024 35 1 1.1631 0.7634 4.7874 36 1 -0.0419 2.5308 6.9831 37 1 -0.7933 3.6651 5.8354 38 1 -0.7476 1.9245 5.4656 39 1 3.0352 3.9298 5.4726 40 1 1.6192 4.9440 5.8399 41 1 2.1330 3.6838 6.9871 42 1 -1.1172 3.1779 3.4730 43 1 -0.2206 2.6876 2.0158 44 1 -0.3814 1.5597 3.3833 45 1 2.3408 4.8582 3.5636 46 1 1.2208 4.6759 2.1922 47 1 0.6212 5.2752 3.7572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079476877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:40 Heat of formation + Delta-G solvation = -4.279036 kcal Electronic energy + Delta-G solvation = -24268.922484 eV Core-core repulsion = 21066.902816 eV Total energy + Delta-G solvation = -3202.019668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20345 -38.57869 -35.15309 -33.22345 -32.61820 -31.19977 -30.05294 -28.91250 -28.29582 -26.51234 -26.01047 -23.57263 -22.97117 -22.65117 -21.08916 -18.15973 -17.00818 -16.66065 -16.26580 -16.07566 -15.60274 -15.15534 -14.81822 -14.30842 -14.00619 -13.63028 -13.39727 -13.28043 -12.91256 -12.59489 -12.43069 -12.33322 -12.12615 -12.06598 -11.97347 -11.87606 -11.60644 -11.46099 -11.31892 -11.21724 -11.11756 -10.86590 -10.80700 -10.69386 -10.51162 -10.16791 -10.07514 -9.84856 -9.56524 -8.77742 -8.39882 -8.39100 -7.55797 -5.99898 -4.04071 3.32797 3.39514 3.44109 3.57163 3.76562 4.17199 4.29015 4.49423 4.66172 5.05101 5.07942 5.11056 5.18266 5.28149 5.33499 5.35121 5.42269 5.50193 5.53238 5.60638 5.65987 5.66484 5.70487 5.78922 5.82395 5.86851 5.93512 5.97655 6.03742 6.09899 6.13105 6.17318 6.24838 6.31420 6.44458 6.49665 6.58044 6.89807 7.08074 7.27030 7.50415 7.64649 7.97699 8.29588 8.53246 8.96982 9.25060 9.61300 11.08066 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004686 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.967593 B = 5973.175937 C = 6443.652504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.602 5.602 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.509 3.491 14 O -0.518 6.518 15 C -0.007 4.007 16 N -0.445 5.445 17 C 0.004 3.996 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.121 4.121 21 C 0.072 3.928 22 C -0.154 4.154 23 C -0.117 4.117 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -4.867 17.250 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.294 3.706 14 O -0.393 6.393 15 C -0.139 4.139 16 N -0.167 5.167 17 C -0.124 4.124 18 C -0.087 4.087 19 C -0.194 4.194 20 C -0.178 4.178 21 C -0.018 4.018 22 C -0.212 4.212 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.166 -3.876 16.921 19.184 hybrid contribution 0.186 -0.862 -0.526 1.027 sum -7.980 -4.737 16.395 18.839 Atomic orbital electron populations 1.22240 0.97053 1.01277 1.02177 1.21361 0.93293 0.84589 1.02439 1.48257 1.64507 1.13100 1.07735 1.19201 0.96081 0.93542 0.78174 1.21451 0.97019 1.31641 1.06075 0.92563 1.24923 0.97756 0.94969 0.96441 1.69935 1.35659 1.33608 1.14341 0.86519 0.84871 0.77606 0.78564 1.20717 1.21120 1.19899 1.20024 0.78918 0.87144 0.84491 1.90653 1.44203 1.17638 1.86799 1.22733 1.01674 0.96819 0.92655 1.68620 1.37426 1.10984 0.99700 1.24057 0.99498 0.95746 0.93148 1.22351 0.95623 0.95866 0.94861 1.21767 0.96050 1.01679 0.99941 1.21515 0.99746 0.97754 0.98827 1.22727 0.89725 0.95954 0.93403 1.22052 0.97168 1.00304 1.01712 1.21509 1.01395 0.92310 1.02241 0.92282 0.93293 0.92024 0.90058 0.92088 0.95295 0.94034 0.92814 0.88961 0.91361 0.89494 0.91725 0.92637 0.92376 0.92568 0.91262 0.92347 0.93031 0.91536 0.91635 0.92553 0.91510 0.91451 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.18 37.16 0.38 -1.90 16 2 C 0.11 1.75 5.85 -4.04 -0.02 1.73 16 3 N -0.60 -12.83 2.46 -175.06 -0.43 -13.26 16 4 C 0.25 6.58 5.16 -5.20 -0.03 6.56 16 5 C -0.52 -15.08 9.39 -34.44 -0.32 -15.40 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 10.72 6.76 -10.99 -0.07 10.64 16 14 O -0.52 -13.06 13.54 5.56 0.08 -12.98 16 15 C -0.01 -0.11 3.33 -4.97 -0.02 -0.13 16 16 N -0.44 -6.83 5.47 -223.86 -1.22 -8.06 16 17 C 0.00 0.05 6.75 -2.77 -0.02 0.03 16 18 C -0.09 -0.96 1.31 -153.58 -0.20 -1.16 16 19 C -0.14 -1.22 8.22 37.16 0.31 -0.91 16 20 C -0.12 -1.31 7.89 37.16 0.29 -1.01 16 21 C 0.07 1.00 0.91 -130.55 -0.12 0.88 16 22 C -0.15 -1.94 6.26 37.15 0.23 -1.70 16 23 C -0.12 -1.83 7.34 37.16 0.27 -1.55 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.62 7.13 -51.93 -0.37 0.25 16 26 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.84 6.60 -51.93 -0.34 0.50 16 29 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.09 1.38 7.69 -51.93 -0.40 0.98 16 33 H 0.07 0.93 4.10 -51.93 -0.21 0.72 16 34 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.06 0.66 7.33 -51.93 -0.38 0.28 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 39 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 40 H 0.06 0.61 7.57 -51.93 -0.39 0.21 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 43 H 0.06 0.98 7.33 -51.93 -0.38 0.60 16 44 H 0.06 0.62 5.66 -51.93 -0.29 0.33 16 45 H 0.07 1.11 7.26 -51.92 -0.38 0.74 16 46 H 0.07 1.26 6.90 -51.93 -0.36 0.91 16 47 H 0.05 0.60 8.06 -51.93 -0.42 0.18 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -32.79 356.89 -8.29 -41.08 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.39 Total: -0.91 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.58 Total: -2.27 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.92 Total: -47.56 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.79 -8.29 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079476877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.804 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds