Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99972 * 270.00056 * 3 2 1 5 5 C 1.50694 * 109.47358 * 269.99806 * 4 3 2 6 6 H 1.07999 * 120.00058 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00404 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99674 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47019 * 90.00372 * 9 7 5 11 11 H 1.48503 * 109.47340 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47128 * 330.00375 * 9 7 5 13 13 C 1.34774 * 119.99958 * 89.99909 * 3 2 1 14 14 O 1.21279 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99753 * 0.02562 * 13 3 2 16 16 N 1.46908 * 109.47267 * 185.61081 * 15 13 3 17 17 C 1.47960 * 111.00361 * 175.68764 * 16 15 13 18 18 C 1.53930 * 86.18020 * 222.42116 * 17 16 15 19 19 C 1.53000 * 113.73596 * 138.07989 * 18 17 16 20 20 C 1.53003 * 113.73181 * 269.36209 * 18 17 16 21 21 C 1.47961 * 110.99658 * 76.32749 * 16 15 13 22 22 C 1.52995 * 113.76136 * 23.26552 * 21 16 15 23 23 C 1.53003 * 113.75967 * 251.90246 * 21 16 15 24 24 H 1.08994 * 109.47388 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46930 * 299.99906 * 1 2 3 26 26 H 1.09009 * 109.46972 * 59.99497 * 1 2 3 27 27 H 1.08997 * 109.46930 * 240.00094 * 2 1 3 28 28 H 1.08999 * 109.46945 * 120.00560 * 2 1 3 29 29 H 1.09000 * 109.47326 * 30.00488 * 4 3 2 30 30 H 1.09003 * 109.46947 * 149.99500 * 4 3 2 31 31 H 0.97000 * 120.00111 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47550 * 65.60959 * 15 13 3 33 33 H 1.09004 * 109.47649 * 305.60920 * 15 13 3 34 34 H 1.08993 * 113.76113 * 108.09710 * 17 16 15 35 35 H 1.09003 * 113.75773 * 336.73463 * 17 16 15 36 36 H 1.09001 * 109.47176 * 79.50084 * 19 18 17 37 37 H 1.09000 * 109.47137 * 199.49660 * 19 18 17 38 38 H 1.09000 * 109.47018 * 319.50305 * 19 18 17 39 39 H 1.09004 * 109.46925 * 40.49069 * 20 18 17 40 40 H 1.08996 * 109.47578 * 160.49616 * 20 18 17 41 41 H 1.08999 * 109.47184 * 280.49847 * 20 18 17 42 42 H 1.08999 * 109.47238 * 163.73340 * 22 21 16 43 43 H 1.08995 * 109.47466 * 283.73770 * 22 21 16 44 44 H 1.08999 * 109.47254 * 43.73925 * 22 21 16 45 45 H 1.09008 * 109.46936 * 323.44502 * 23 21 16 46 46 H 1.08995 * 109.46950 * 83.43982 * 23 21 16 47 47 H 1.08991 * 109.46976 * 203.44403 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6181 9 14 5.9135 2.0967 -3.4168 10 1 5.9775 0.8754 -4.2591 11 1 6.3921 3.2639 -4.2003 12 1 6.7736 1.9179 -2.2195 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.1808 2.2456 3.5856 17 6 1.8430 1.6105 4.8786 18 6 1.1402 2.9347 5.2281 19 6 -0.2075 2.7505 5.9284 20 6 2.0471 3.9458 5.9325 21 6 1.0239 3.1595 3.7097 22 6 -0.2666 2.6065 3.1017 23 6 1.3231 4.5955 3.2744 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5817 1.6878 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 3.6751 3.5162 -4.4440 32 1 2.6920 0.4763 2.5746 33 1 0.9715 0.9242 2.4879 34 1 2.7106 1.3957 5.5024 35 1 1.1631 0.7634 4.7874 36 1 -0.0419 2.5308 6.9831 37 1 -0.7933 3.6651 5.8354 38 1 -0.7476 1.9245 5.4656 39 1 3.0352 3.9298 5.4726 40 1 1.6192 4.9440 5.8399 41 1 2.1330 3.6838 6.9871 42 1 -1.1172 3.1779 3.4730 43 1 -0.2206 2.6876 2.0158 44 1 -0.3814 1.5597 3.3833 45 1 2.3408 4.8582 3.5636 46 1 1.2208 4.6759 2.1922 47 1 0.6212 5.2752 3.7572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079476877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = -26.648280 kcal Electronic energy + Delta-G solvation = -24269.892487 eV Core-core repulsion = 21066.902816 eV Total energy + Delta-G solvation = -3202.989671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27789 -40.18260 -36.84738 -34.98327 -34.07819 -32.26837 -31.61354 -30.07426 -29.52765 -28.21945 -26.93955 -25.16558 -24.36276 -23.96837 -22.34170 -19.71095 -18.63979 -17.98152 -17.97305 -17.41603 -16.93391 -16.48747 -16.20152 -15.85728 -15.47392 -14.80441 -14.63109 -14.52727 -14.25970 -14.16321 -13.56363 -13.52139 -13.34777 -13.30319 -13.13232 -13.11383 -12.92635 -12.82919 -12.66903 -12.54349 -12.48860 -12.38805 -12.32769 -12.17439 -11.88580 -11.74298 -11.70950 -11.13151 -10.82867 -10.64931 -10.41073 -9.53201 -9.35831 -8.22822 -6.37773 1.33774 1.37304 1.47649 1.94715 2.28379 2.42386 3.00270 3.06113 3.36265 3.70706 3.76347 4.06875 4.08567 4.16285 4.23759 4.30968 4.37549 4.43544 4.44170 4.59235 4.64289 4.67648 4.78522 4.88311 4.89653 4.91500 4.93179 4.95298 4.97978 5.04278 5.05589 5.11225 5.20406 5.21613 5.27726 5.31780 5.37124 5.45810 5.58402 5.59839 5.70951 5.89278 6.07674 6.18277 6.71046 6.88393 7.29264 7.61672 8.83858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.004686 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.967593 B = 5973.175937 C = 6443.652504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.609 5.609 4 C 0.268 3.732 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.499 3.501 14 O -0.572 6.572 15 C 0.009 3.991 16 N -0.482 5.482 17 C 0.011 3.989 18 C -0.074 4.074 19 C -0.132 4.132 20 C -0.121 4.121 21 C 0.061 3.939 22 C -0.148 4.148 23 C -0.110 4.110 24 H 0.096 0.904 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.018 0.982 30 H -0.008 1.008 31 H 0.267 0.733 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.032 0.968 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.022 0.978 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 -7.372 19.630 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.342 5.342 4 C 0.146 3.854 5 C -0.580 4.580 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.287 3.713 14 O -0.451 6.451 15 C -0.122 4.122 16 N -0.205 5.205 17 C -0.117 4.117 18 C -0.074 4.074 19 C -0.190 4.190 20 C -0.178 4.178 21 C -0.029 4.029 22 C -0.206 4.206 23 C -0.168 4.168 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.011 0.989 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.884 -6.432 19.319 22.215 hybrid contribution 0.394 -0.021 -1.261 1.321 sum -8.490 -6.453 18.058 20.972 Atomic orbital electron populations 1.22157 0.94597 1.03477 1.01533 1.21696 0.95299 0.81644 1.03590 1.48284 1.64695 1.14995 1.06193 1.18594 0.95019 0.91280 0.80516 1.21707 0.97983 1.31858 1.06405 0.93204 1.25848 1.02354 0.94460 0.96430 1.70056 1.37770 1.34275 1.14789 0.85428 0.79037 0.78277 0.78135 1.18617 1.20568 1.20021 1.21073 0.77467 0.86756 0.86019 1.90629 1.46518 1.20209 1.87714 1.22632 1.03530 0.96414 0.89622 1.68610 1.38934 1.12004 1.00943 1.24163 1.00298 0.96484 0.90724 1.22281 0.97008 0.95445 0.92714 1.21752 0.94296 1.02266 1.00676 1.21504 0.98379 0.97989 0.99919 1.22838 0.89883 0.94227 0.95912 1.21996 0.97073 1.02022 0.99490 1.21416 1.00789 0.95147 0.99410 0.88506 0.92293 0.94381 0.91173 0.88627 0.96381 0.98949 0.92451 0.87465 0.88541 0.88863 0.89269 0.90956 0.92151 0.91556 0.93807 0.92378 0.90786 0.89723 0.94896 0.90136 0.93578 0.95843 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.18 71.98 0.73 -3.26 16 2 C 0.10 3.15 5.85 86.38 0.51 3.65 16 3 N -0.61 -26.72 2.46 -826.17 -2.03 -28.75 16 4 C 0.27 15.00 5.16 85.63 0.44 15.44 16 5 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 9 Si 0.97 46.40 29.54 68.60 2.03 48.43 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.50 21.63 6.76 87.66 0.59 22.22 16 14 O -0.57 -30.80 13.54 -3.02 -0.04 -30.84 16 15 C 0.01 0.27 3.33 85.56 0.29 0.56 16 16 N -0.48 -14.27 5.47 -862.15 -4.72 -18.99 16 17 C 0.01 0.22 6.75 86.40 0.58 0.81 16 18 C -0.07 -1.44 1.31 -51.54 -0.07 -1.51 16 19 C -0.13 -1.79 8.22 71.98 0.59 -1.20 16 20 C -0.12 -2.41 7.89 71.98 0.57 -1.84 16 21 C 0.06 1.64 0.91 3.63 0.00 1.65 16 22 C -0.15 -3.43 6.26 71.98 0.45 -2.98 16 23 C -0.11 -3.60 7.34 71.98 0.53 -3.08 16 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.35 7.13 -2.39 -0.02 1.34 16 26 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.10 2.35 6.60 -2.39 -0.02 2.33 16 29 H 0.02 1.03 8.07 -2.39 -0.02 1.02 16 30 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.11 2.91 7.69 -2.38 -0.02 2.89 16 33 H 0.10 2.32 4.10 -2.39 -0.01 2.31 16 34 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.09 1.35 7.33 -2.39 -0.02 1.34 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.79 6.84 -2.39 -0.02 0.77 16 39 H 0.04 1.09 7.72 -2.38 -0.02 1.07 16 40 H 0.06 1.14 7.57 -2.39 -0.02 1.12 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.63 7.78 -2.39 -0.02 1.62 16 43 H 0.03 0.97 7.33 -2.39 -0.02 0.96 16 44 H 0.08 1.45 5.66 -2.39 -0.01 1.44 16 45 H 0.05 1.65 7.26 -2.38 -0.02 1.63 16 46 H 0.02 0.94 6.90 -2.39 -0.02 0.92 16 47 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 Total: -1.00 -77.34 356.89 2.36 -74.98 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.92 Total: 13.42 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.92 Total: -0.74 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -6.46 Total: -105.24 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.04 Total: -30.84 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -77.34 2.36 -74.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079476877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.333 kcal (2) G-P(sol) polarization free energy of solvation -77.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds