Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47347 * 2 1 4 4 C 1.46500 * 119.99647 * 270.00076 * 3 2 1 5 5 C 1.50695 * 109.47285 * 269.99541 * 4 3 2 6 6 H 1.08007 * 120.00045 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99745 * 179.97438 * 5 4 3 8 8 N 1.31503 * 120.00420 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99676 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47350 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47293 * 120.00304 * 9 7 5 12 12 H 1.48499 * 109.46994 * 240.00632 * 9 7 5 13 13 C 1.34767 * 119.99990 * 90.00300 * 3 2 1 14 14 O 1.21278 * 120.00207 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00326 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.47469 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99741 * 298.49026 * 16 15 13 18 18 C 1.52998 * 109.47003 * 288.55791 * 17 16 15 19 19 C 1.46895 * 111.00220 * 62.44155 * 16 15 13 20 20 C 1.54891 * 110.48188 * 63.24480 * 19 16 15 21 21 C 1.55240 * 102.58703 * 156.67930 * 20 19 16 22 22 C 1.54265 * 104.22992 * 322.08164 * 21 20 19 23 23 C 1.53874 * 106.59943 * 23.61486 * 22 21 20 24 24 H 1.09006 * 109.47089 * 300.00084 * 1 2 3 25 25 H 1.08999 * 109.47183 * 59.99810 * 1 2 3 26 26 H 1.08997 * 109.47498 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47089 * 239.99916 * 2 1 3 28 28 H 1.08999 * 109.47183 * 120.00190 * 2 1 3 29 29 H 1.09000 * 109.47654 * 30.00432 * 4 3 2 30 30 H 1.09003 * 109.46840 * 149.99587 * 4 3 2 31 31 H 0.97003 * 120.00506 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46711 * 59.99319 * 15 13 3 33 33 H 1.09005 * 109.46908 * 299.99717 * 15 13 3 34 34 H 1.09005 * 109.46779 * 48.55967 * 17 16 15 35 35 H 1.08997 * 109.46832 * 168.55764 * 17 16 15 36 36 H 1.08993 * 109.47544 * 305.87562 * 18 17 16 37 37 H 1.09004 * 109.47376 * 65.88133 * 18 17 16 38 38 H 1.09009 * 109.46843 * 185.87297 * 18 17 16 39 39 H 1.08998 * 110.43891 * 300.70759 * 19 16 15 40 40 H 1.09001 * 110.75504 * 275.06146 * 20 19 16 41 41 H 1.08996 * 110.75765 * 38.43745 * 20 19 16 42 42 H 1.09004 * 110.46671 * 203.39440 * 21 20 19 43 43 H 1.08993 * 110.58782 * 80.82905 * 21 20 19 44 44 H 1.09007 * 110.03513 * 264.32847 * 22 21 20 45 45 H 1.08996 * 110.07424 * 142.91874 * 22 21 20 46 46 H 1.09007 * 110.03080 * 240.71752 * 23 22 21 47 47 H 1.08995 * 110.03461 * 119.28589 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1490 2.3896 -2.8781 8 7 3.3490 3.1255 -3.6182 9 14 5.9130 2.0955 -3.4177 10 1 6.6005 1.2396 -2.4177 11 1 5.9201 1.4163 -4.7382 12 1 6.6208 3.3964 -3.5264 13 6 2.2431 2.0165 1.1671 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3104 2.2060 3.5888 17 6 3.7269 2.5944 3.5638 18 6 4.5915 1.3956 3.9592 19 6 1.4399 3.3892 3.5768 20 6 -0.0385 2.9766 3.7849 21 6 -0.6776 4.2772 4.3416 22 6 0.4075 4.8673 5.2658 23 6 1.7538 4.3028 4.7795 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6878 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 3.6750 3.5160 -4.4442 32 1 2.6212 0.4185 2.5301 33 1 0.9432 1.0127 2.5299 34 1 3.9963 2.9211 2.5593 35 1 3.8926 3.4099 4.2678 36 1 4.2527 1.0039 4.9183 37 1 4.5059 0.6193 3.1989 38 1 5.6320 1.7097 4.0422 39 1 1.5550 3.9369 2.6414 40 1 -0.4972 2.6926 2.8378 41 1 -0.1150 2.1670 4.5106 42 1 -1.5785 4.0461 4.9101 43 1 -0.9060 4.9693 3.5312 44 1 0.2256 4.5634 6.2968 45 1 0.4103 5.9548 5.1925 46 1 2.2253 3.7248 5.5744 47 1 2.4096 5.1163 4.4694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080000527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -41.909537 kcal Electronic energy + Delta-G solvation = -24090.734483 eV Core-core repulsion = 20887.083034 eV Total energy + Delta-G solvation = -3203.651449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.98982 -37.96274 -35.70016 -34.81268 -32.81635 -30.68874 -30.08601 -28.95621 -28.25610 -26.78320 -25.13357 -23.06432 -22.66012 -21.41318 -20.28912 -19.52659 -18.14734 -16.61201 -16.46734 -16.20064 -15.65017 -15.36932 -14.64444 -14.52976 -14.15042 -13.93182 -13.38609 -13.29500 -13.15167 -12.95009 -12.50359 -12.31133 -12.05929 -11.87114 -11.60430 -11.49448 -11.25017 -11.20245 -11.11873 -10.91420 -10.84109 -10.71855 -10.57866 -10.50984 -10.44014 -10.37561 -10.23877 -10.11984 -9.62075 -9.51825 -8.45333 -7.67366 -7.63393 -6.05751 -4.10397 3.28030 3.34477 3.37092 3.41800 3.98031 4.13983 4.43638 4.68729 4.79326 5.00725 5.13302 5.29066 5.29896 5.35744 5.42864 5.54878 5.62294 5.63413 5.69384 5.71394 5.76875 5.78145 5.78761 5.84960 5.92067 5.97103 5.99102 6.06611 6.13183 6.21467 6.24866 6.28069 6.32414 6.41215 6.47952 6.54788 6.64782 7.03689 7.28058 7.38954 7.44150 7.55359 7.90790 8.22787 8.42840 8.89082 9.08317 9.54925 11.02303 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.004986 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.758492 B = 5614.621560 C = 5951.964391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.476 3.524 14 O -0.541 6.541 15 C 0.029 3.971 16 N -0.508 5.508 17 C 0.027 3.973 18 C -0.144 4.144 19 C 0.062 3.938 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 -4.005 15.454 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.263 3.737 14 O -0.420 6.420 15 C -0.102 4.102 16 N -0.230 5.230 17 C -0.101 4.101 18 C -0.202 4.202 19 C -0.046 4.046 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.310 -3.550 15.716 17.304 hybrid contribution 1.123 0.187 -1.298 1.727 sum -5.187 -3.364 14.418 15.687 Atomic orbital electron populations 1.22211 0.96769 1.01443 1.02247 1.21415 0.93529 0.84274 1.02651 1.48413 1.63088 1.13177 1.08021 1.19244 0.96206 0.93573 0.78408 1.21455 0.96906 1.31731 1.06164 0.92533 1.24930 0.97797 0.94947 0.96410 1.69937 1.35583 1.33547 1.14335 0.86465 0.84712 0.78050 0.78333 1.19821 1.20956 1.20894 1.21597 0.78489 0.87448 0.86204 1.90566 1.46222 1.18277 1.86921 1.22349 1.03035 0.97197 0.87647 1.62652 1.04408 1.16450 1.39534 1.22382 0.87249 0.97407 1.03036 1.21764 0.98767 0.98415 1.01252 1.22795 0.91651 0.90920 0.99218 1.22592 0.94765 0.97529 1.00524 1.22345 0.97655 0.97141 0.98912 1.22066 0.94886 0.99829 0.99015 1.22160 0.97011 0.98325 0.97831 0.93089 0.92119 0.92117 0.90021 0.91703 0.95215 0.94088 0.92800 0.88565 0.88624 0.90803 0.91307 0.92522 0.93190 0.92719 0.89964 0.92198 0.90901 0.91941 0.91759 0.92100 0.92219 0.91186 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.37 2.46 -175.06 -0.43 -12.80 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.36 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.68 13.28 55.43 0.74 -25.94 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.48 9.62 6.94 -10.99 -0.08 9.54 16 14 O -0.54 -12.95 11.26 5.56 0.06 -12.89 16 15 C 0.03 0.45 4.06 -4.98 -0.02 0.43 16 16 N -0.51 -7.63 4.50 -226.09 -1.02 -8.64 16 17 C 0.03 0.42 5.19 -3.82 -0.02 0.40 16 18 C -0.14 -1.94 9.83 37.16 0.37 -1.58 16 19 C 0.06 0.93 2.19 -66.06 -0.14 0.79 16 20 C -0.12 -1.48 5.41 -24.55 -0.13 -1.61 16 21 C -0.12 -1.38 6.84 -24.88 -0.17 -1.55 16 22 C -0.12 -1.32 6.80 -25.61 -0.17 -1.49 16 23 C -0.12 -1.49 5.01 -25.61 -0.13 -1.62 16 24 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.10 1.36 6.00 -51.93 -0.31 1.05 16 33 H 0.10 1.29 6.04 -51.93 -0.31 0.98 16 34 H 0.07 1.46 5.35 -51.93 -0.28 1.19 16 35 H 0.07 1.01 6.39 -51.93 -0.33 0.68 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.70 6.96 -51.93 -0.36 0.33 16 38 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.08 1.56 5.64 -51.93 -0.29 1.27 16 40 H 0.06 0.80 7.89 -51.93 -0.41 0.39 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.88 7.67 -51.93 -0.40 0.48 16 47 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -31.37 357.49 -9.28 -40.64 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.40 Total: 1.36 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.59 Total: -4.03 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.71 Total: -47.38 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.06 Total: -12.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.37 -9.28 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080000527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.267 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds