Wall clock time and date at job start Tue Mar 31 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47386 * 2 1 4 4 C 1.46902 * 110.99819 * 287.23039 * 3 2 1 5 5 C 1.50697 * 109.47561 * 160.75927 * 4 3 2 6 6 H 1.08007 * 119.99518 * 4.68781 * 5 4 3 7 7 C 1.37873 * 120.00598 * 184.69229 * 5 4 3 8 8 N 1.31515 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00263 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47143 * 59.99961 * 9 7 5 11 11 H 1.48505 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46964 * 299.99803 * 9 7 5 13 13 C 1.46895 * 111.00308 * 163.27848 * 3 2 1 14 14 C 1.50700 * 109.47109 * 293.95151 * 13 3 2 15 15 O 1.21281 * 119.99660 * 354.46257 * 14 13 3 16 16 N 1.34778 * 120.00338 * 174.46626 * 14 13 3 17 17 C 1.46493 * 120.00088 * 185.10760 * 16 14 13 18 18 C 1.53003 * 109.47455 * 270.27599 * 17 16 14 19 19 C 1.53002 * 109.46993 * 64.99919 * 18 17 16 20 20 C 1.53003 * 109.47207 * 184.99978 * 18 17 16 21 21 C 1.46501 * 119.99591 * 5.38746 * 16 14 13 22 22 C 1.53008 * 117.49646 * 181.84178 * 21 16 14 23 23 C 1.52998 * 117.49873 * 113.21831 * 21 16 14 24 24 H 1.09002 * 109.46952 * 68.82586 * 1 2 3 25 25 H 1.09004 * 109.47412 * 188.82681 * 1 2 3 26 26 H 1.08999 * 109.47187 * 308.83011 * 1 2 3 27 27 H 1.08999 * 109.47417 * 239.99431 * 2 1 3 28 28 H 1.09001 * 109.46838 * 119.99692 * 2 1 3 29 29 H 1.09000 * 109.47053 * 280.75966 * 4 3 2 30 30 H 1.09003 * 109.47284 * 40.75848 * 4 3 2 31 31 H 0.96995 * 120.00367 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47308 * 173.94950 * 13 3 2 33 33 H 1.08999 * 109.47505 * 53.95178 * 13 3 2 34 34 H 1.09002 * 109.47551 * 30.27792 * 17 16 14 35 35 H 1.08998 * 109.47245 * 150.27257 * 17 16 14 36 36 H 1.09000 * 109.46594 * 305.00242 * 18 17 16 37 37 H 1.09003 * 109.46816 * 60.00330 * 19 18 17 38 38 H 1.08992 * 109.47099 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47333 * 300.00437 * 19 18 17 40 40 H 1.09001 * 109.46603 * 59.99817 * 20 18 17 41 41 H 1.09001 * 109.46868 * 179.97438 * 20 18 17 42 42 H 1.08995 * 109.46835 * 300.00196 * 20 18 17 43 43 H 1.08997 * 115.55227 * 327.54015 * 21 16 14 44 44 H 1.09003 * 117.49541 * 359.97438 * 22 21 16 45 45 H 1.08999 * 117.49565 * 145.02017 * 22 21 16 46 46 H 1.09005 * 117.50088 * 214.97181 * 23 21 16 47 47 H 1.09001 * 117.50262 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8122 2.0167 -1.3099 5 6 1.8713 3.5150 -1.1601 6 1 2.1205 3.9528 -0.2047 7 6 1.6073 4.3271 -2.2426 8 7 1.3043 3.7941 -3.4061 9 14 1.6799 6.1844 -2.0567 10 1 3.0448 6.5863 -1.6311 11 1 1.3587 6.8250 -3.3574 12 1 0.6947 6.6184 -1.0339 13 6 3.4334 1.4435 0.3946 14 6 3.5718 1.0144 1.8325 15 8 2.5819 0.7884 2.4958 16 7 4.7955 0.8818 2.3815 17 6 4.9350 0.3579 3.7425 18 6 4.8862 1.5153 4.7420 19 6 3.5031 2.1680 4.6994 20 6 5.1561 0.9839 6.1512 21 6 5.9858 1.2675 1.6195 22 6 7.3486 1.0528 2.2813 23 6 6.7890 2.4681 2.1235 24 1 -0.3633 0.3712 -0.9583 25 1 -0.3634 -1.0155 0.1577 26 1 -0.3633 0.6444 0.8005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 2.5910 1.6894 -1.9986 30 1 0.8365 1.7290 -1.7016 31 1 1.1189 4.3653 -4.1678 32 1 3.7999 2.4640 0.2830 33 1 4.0160 0.7768 -0.2412 34 1 4.1204 -0.3360 3.9500 35 1 5.8881 -0.1626 3.8355 36 1 5.6445 2.2533 4.4806 37 1 2.7448 1.4299 4.9608 38 1 3.4681 2.9922 5.4117 39 1 3.3107 2.5466 3.6955 40 1 6.1415 0.5188 6.1815 41 1 5.1218 1.8085 6.8632 42 1 4.3978 0.2458 6.4125 43 1 5.9213 1.1220 0.5412 44 1 7.3593 0.6251 3.2838 45 1 8.1807 0.7660 1.6383 46 1 7.2533 3.1124 1.3768 47 1 6.4317 2.9714 3.0219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:46 Heat of formation + Delta-G solvation = -6.475974 kcal Electronic energy + Delta-G solvation = -23794.804598 eV Core-core repulsion = 20592.689664 eV Total energy + Delta-G solvation = -3202.114934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17450 -37.67227 -36.24857 -35.36178 -32.62273 -32.56281 -30.33837 -28.23259 -27.07164 -26.49800 -24.61864 -22.64572 -22.47727 -22.28473 -20.44698 -19.86021 -18.74601 -17.12102 -16.44129 -16.01793 -15.57655 -14.90984 -14.76341 -14.46654 -14.33700 -13.84945 -13.82534 -13.34609 -12.98957 -12.84608 -12.34661 -12.20171 -12.06514 -11.98431 -11.80909 -11.55619 -11.52129 -11.33508 -11.10621 -10.91137 -10.79993 -10.77099 -10.71353 -10.59699 -10.50814 -10.47734 -10.19682 -9.78060 -9.28329 -9.03175 -8.39260 -8.30897 -7.18633 -5.99840 -4.00968 2.98038 3.07017 3.34938 3.39201 3.43034 3.76192 4.44573 4.58874 4.72839 4.78285 4.79869 4.91087 4.98314 5.08368 5.16324 5.33982 5.35943 5.50145 5.57135 5.66452 5.71092 5.78482 5.85122 5.88752 5.90518 5.93804 5.98056 6.02699 6.12155 6.13890 6.19049 6.27352 6.35507 6.47458 6.61995 6.68819 6.75729 6.97591 7.23323 7.34675 7.58846 7.85098 8.13708 8.22412 8.55581 8.65205 9.06376 9.63058 11.10579 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.005059 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.908566 B = 5533.673316 C = 6149.485403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.054 3.946 3 N -0.518 5.518 4 C 0.192 3.808 5 C -0.504 4.504 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.049 3.951 14 C 0.520 3.480 15 O -0.510 6.510 16 N -0.595 5.595 17 C 0.119 3.881 18 C -0.115 4.115 19 C -0.138 4.138 20 C -0.144 4.144 21 C 0.075 3.925 22 C -0.187 4.187 23 C -0.194 4.194 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.015 0.985 28 H 0.064 0.936 29 H -0.012 1.012 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.109 0.891 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.900 -7.250 12.985 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 N -0.243 5.243 4 C 0.068 3.932 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.082 4.082 14 C 0.309 3.691 15 O -0.383 6.383 16 N -0.329 5.329 17 C -0.004 4.004 18 C -0.134 4.134 19 C -0.195 4.195 20 C -0.202 4.202 21 C -0.030 4.030 22 C -0.224 4.224 23 C -0.232 4.232 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.969 -7.084 13.479 18.767 hybrid contribution 0.666 0.698 -0.647 1.162 sum 11.635 -6.385 12.832 18.461 Atomic orbital electron populations 1.21658 0.95426 0.99883 1.02493 1.22015 0.96369 0.90284 0.98791 1.61876 1.13669 1.15303 1.33432 1.19811 0.96710 0.94264 0.82437 1.21130 1.46534 0.90686 0.95956 0.92059 1.24962 0.95462 0.98831 0.95217 1.69943 1.47900 1.35336 1.00751 0.86593 0.78525 0.85349 0.77132 1.20341 1.21397 1.20171 1.21900 0.92827 1.02890 0.90607 1.21011 0.81717 0.76291 0.90103 1.90659 1.36316 1.48213 1.63147 1.47521 1.05338 1.65297 1.14722 1.21535 1.02190 0.95811 0.80860 1.21635 0.99016 0.97908 0.94842 1.21810 0.95545 0.99957 1.02217 1.21781 1.01117 1.01122 0.96164 1.21749 0.83374 1.01908 0.95973 1.23308 0.96205 1.00246 1.02672 1.23508 1.04082 0.91463 1.04185 0.92755 0.93891 0.91869 0.96684 0.91710 0.99407 0.94179 0.92912 0.87262 0.93813 0.90055 0.90849 0.91232 0.92264 0.93953 0.91893 0.93004 0.92599 0.92541 0.85171 0.88269 0.87992 0.87968 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.84 37.15 0.37 -2.25 16 2 C 0.05 1.07 5.25 -3.83 -0.02 1.05 16 3 N -0.52 -11.61 4.08 -237.52 -0.97 -12.58 16 4 C 0.19 5.01 4.58 -4.98 -0.02 4.99 16 5 C -0.50 -14.15 8.60 -34.44 -0.30 -14.45 16 6 H 0.06 1.72 7.63 -52.48 -0.40 1.32 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 C 0.05 0.94 3.93 -4.98 -0.02 0.92 16 14 C 0.52 9.06 5.82 -10.98 -0.06 9.00 16 15 O -0.51 -10.20 12.17 5.56 0.07 -10.13 16 16 N -0.59 -8.07 2.69 -166.11 -0.45 -8.51 16 17 C 0.12 1.39 4.52 -4.04 -0.02 1.37 16 18 C -0.11 -1.29 3.11 -90.62 -0.28 -1.57 16 19 C -0.14 -1.94 7.86 37.16 0.29 -1.65 16 20 C -0.14 -1.30 9.19 37.16 0.34 -0.96 16 21 C 0.08 0.85 5.94 -67.93 -0.40 0.45 16 22 C -0.19 -1.61 9.73 -26.72 -0.26 -1.87 16 23 C -0.19 -1.96 10.19 -26.73 -0.27 -2.23 16 24 H 0.05 1.09 6.87 -51.93 -0.36 0.73 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.01 0.29 8.04 -51.93 -0.42 -0.12 16 28 H 0.06 1.26 6.00 -51.93 -0.31 0.95 16 29 H -0.01 -0.32 8.01 -51.93 -0.42 -0.74 16 30 H 0.04 1.12 6.44 -51.93 -0.33 0.79 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.11 2.20 7.29 -51.93 -0.38 1.82 16 33 H 0.04 0.77 7.44 -51.93 -0.39 0.39 16 34 H 0.08 1.07 7.51 -51.93 -0.39 0.69 16 35 H 0.07 0.70 6.02 -51.93 -0.31 0.38 16 36 H 0.07 0.77 5.77 -51.93 -0.30 0.47 16 37 H 0.06 0.89 7.92 -51.93 -0.41 0.48 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.13 1.46 6.87 -51.93 -0.36 1.10 16 44 H 0.10 0.80 6.13 -51.93 -0.32 0.48 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.10 1.06 6.04 -51.93 -0.31 0.75 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -30.92 360.46 -9.19 -40.11 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.23 Total: 0.54 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.76 Total: -5.69 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.68 Total: -46.93 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.13 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.92 -9.19 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.634 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds