Wall clock time and date at job start Tue Mar 31 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46899 * 109.47386 * 2 1 4 4 C 1.46902 * 110.99819 * 287.23039 * 3 2 1 5 5 C 1.50697 * 109.47561 * 160.75927 * 4 3 2 6 6 H 1.08007 * 119.99518 * 4.68781 * 5 4 3 7 7 C 1.37873 * 120.00598 * 184.69229 * 5 4 3 8 8 N 1.31515 * 119.99724 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00263 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47143 * 59.99961 * 9 7 5 11 11 H 1.48505 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46964 * 299.99803 * 9 7 5 13 13 C 1.46895 * 111.00308 * 163.27848 * 3 2 1 14 14 C 1.50700 * 109.47109 * 293.95151 * 13 3 2 15 15 O 1.21281 * 119.99660 * 354.46257 * 14 13 3 16 16 N 1.34778 * 120.00338 * 174.46626 * 14 13 3 17 17 C 1.46493 * 120.00088 * 185.10760 * 16 14 13 18 18 C 1.53003 * 109.47455 * 270.27599 * 17 16 14 19 19 C 1.53002 * 109.46993 * 64.99919 * 18 17 16 20 20 C 1.53003 * 109.47207 * 184.99978 * 18 17 16 21 21 C 1.46501 * 119.99591 * 5.38746 * 16 14 13 22 22 C 1.53008 * 117.49646 * 181.84178 * 21 16 14 23 23 C 1.52998 * 117.49873 * 113.21831 * 21 16 14 24 24 H 1.09002 * 109.46952 * 68.82586 * 1 2 3 25 25 H 1.09004 * 109.47412 * 188.82681 * 1 2 3 26 26 H 1.08999 * 109.47187 * 308.83011 * 1 2 3 27 27 H 1.08999 * 109.47417 * 239.99431 * 2 1 3 28 28 H 1.09001 * 109.46838 * 119.99692 * 2 1 3 29 29 H 1.09000 * 109.47053 * 280.75966 * 4 3 2 30 30 H 1.09003 * 109.47284 * 40.75848 * 4 3 2 31 31 H 0.96995 * 120.00367 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47308 * 173.94950 * 13 3 2 33 33 H 1.08999 * 109.47505 * 53.95178 * 13 3 2 34 34 H 1.09002 * 109.47551 * 30.27792 * 17 16 14 35 35 H 1.08998 * 109.47245 * 150.27257 * 17 16 14 36 36 H 1.09000 * 109.46594 * 305.00242 * 18 17 16 37 37 H 1.09003 * 109.46816 * 60.00330 * 19 18 17 38 38 H 1.08992 * 109.47099 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47333 * 300.00437 * 19 18 17 40 40 H 1.09001 * 109.46603 * 59.99817 * 20 18 17 41 41 H 1.09001 * 109.46868 * 179.97438 * 20 18 17 42 42 H 1.08995 * 109.46835 * 300.00196 * 20 18 17 43 43 H 1.08997 * 115.55227 * 327.54015 * 21 16 14 44 44 H 1.09003 * 117.49541 * 359.97438 * 22 21 16 45 45 H 1.08999 * 117.49565 * 145.02017 * 22 21 16 46 46 H 1.09005 * 117.50088 * 214.97181 * 23 21 16 47 47 H 1.09001 * 117.50262 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8122 2.0167 -1.3099 5 6 1.8713 3.5150 -1.1601 6 1 2.1205 3.9528 -0.2047 7 6 1.6073 4.3271 -2.2426 8 7 1.3043 3.7941 -3.4061 9 14 1.6799 6.1844 -2.0567 10 1 3.0448 6.5863 -1.6311 11 1 1.3587 6.8250 -3.3574 12 1 0.6947 6.6184 -1.0339 13 6 3.4334 1.4435 0.3946 14 6 3.5718 1.0144 1.8325 15 8 2.5819 0.7884 2.4958 16 7 4.7955 0.8818 2.3815 17 6 4.9350 0.3579 3.7425 18 6 4.8862 1.5153 4.7420 19 6 3.5031 2.1680 4.6994 20 6 5.1561 0.9839 6.1512 21 6 5.9858 1.2675 1.6195 22 6 7.3486 1.0528 2.2813 23 6 6.7890 2.4681 2.1235 24 1 -0.3633 0.3712 -0.9583 25 1 -0.3634 -1.0155 0.1577 26 1 -0.3633 0.6444 0.8005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 2.5910 1.6894 -1.9986 30 1 0.8365 1.7290 -1.7016 31 1 1.1189 4.3653 -4.1678 32 1 3.7999 2.4640 0.2830 33 1 4.0160 0.7768 -0.2412 34 1 4.1204 -0.3360 3.9500 35 1 5.8881 -0.1626 3.8355 36 1 5.6445 2.2533 4.4806 37 1 2.7448 1.4299 4.9608 38 1 3.4681 2.9922 5.4117 39 1 3.3107 2.5466 3.6955 40 1 6.1415 0.5188 6.1815 41 1 5.1218 1.8085 6.8632 42 1 4.3978 0.2458 6.4125 43 1 5.9213 1.1220 0.5412 44 1 7.3593 0.6251 3.2838 45 1 8.1807 0.7660 1.6383 46 1 7.2533 3.1124 1.3768 47 1 6.4317 2.9714 3.0219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:45 Heat of formation + Delta-G solvation = -24.773395 kcal Electronic energy + Delta-G solvation = -23795.598034 eV Core-core repulsion = 20592.689664 eV Total energy + Delta-G solvation = -3202.908370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38751 -38.95862 -37.73776 -36.37470 -34.71087 -33.72180 -31.93585 -29.98677 -28.15194 -27.88176 -26.12642 -24.39962 -23.53667 -23.18458 -21.91434 -21.06190 -19.90847 -18.58764 -18.36118 -17.24553 -16.90533 -16.55778 -15.99696 -15.84030 -15.67579 -15.28264 -15.20878 -14.58625 -14.31316 -14.22515 -14.01499 -13.47295 -13.29252 -13.11210 -13.04100 -12.92001 -12.80714 -12.72062 -12.66518 -12.58724 -12.33153 -12.27366 -12.10245 -11.77276 -11.64619 -11.61265 -11.40826 -11.38951 -11.32005 -10.62420 -10.47744 -9.38439 -8.98603 -8.17928 -6.27706 1.40694 1.44002 1.51857 1.65852 1.92645 2.41375 2.93801 3.12611 3.27914 3.60069 3.82112 3.88554 3.97440 4.03729 4.10981 4.19286 4.21711 4.31165 4.49676 4.52352 4.54029 4.64568 4.69354 4.79463 4.80763 4.87887 4.89501 4.93238 4.99038 5.02267 5.06665 5.10055 5.23319 5.23873 5.25728 5.27305 5.35746 5.40899 5.49974 5.66386 5.68704 6.08441 6.24803 6.48788 6.61420 6.86085 7.30573 7.41396 8.92137 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.005059 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.908566 B = 5533.673316 C = 6149.485403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 N -0.533 5.533 4 C 0.210 3.790 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.052 3.948 14 C 0.522 3.478 15 O -0.543 6.543 16 N -0.584 5.584 17 C 0.117 3.883 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.138 4.138 21 C 0.042 3.958 22 C -0.154 4.154 23 C -0.196 4.196 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.019 0.981 28 H 0.073 0.927 29 H -0.031 1.031 30 H 0.014 0.986 31 H 0.265 0.735 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 -7.325 14.468 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.072 4.072 3 N -0.258 5.258 4 C 0.084 3.916 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.200 1.200 13 C -0.079 4.079 14 C 0.311 3.689 15 O -0.420 6.420 16 N -0.316 5.316 17 C -0.005 4.005 18 C -0.127 4.127 19 C -0.190 4.190 20 C -0.196 4.196 21 C -0.062 4.062 22 C -0.191 4.191 23 C -0.234 4.234 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.091 0.909 29 H -0.014 1.014 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.126 0.874 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.364 -7.171 14.983 21.319 hybrid contribution -0.021 0.688 -1.093 1.292 sum 13.344 -6.483 13.890 20.322 Atomic orbital electron populations 1.21610 0.94852 1.01514 1.00846 1.22048 0.96881 0.89020 0.99244 1.61774 1.16120 1.16837 1.31118 1.19435 0.94520 0.93820 0.83793 1.21360 1.46800 0.91886 0.95814 0.92750 1.25802 0.94794 1.03730 0.94735 1.70059 1.48479 1.37156 1.01500 0.85531 0.79020 0.79365 0.77273 1.18968 1.20594 1.20045 1.21836 0.91041 1.02511 0.92562 1.20574 0.82762 0.76439 0.89146 1.90642 1.37736 1.50137 1.63485 1.47413 1.04747 1.63925 1.15497 1.21718 1.03229 0.95873 0.79655 1.21592 0.97118 0.97674 0.96357 1.21732 0.97203 0.99952 1.00113 1.21737 1.02301 1.01296 0.94292 1.21974 0.83901 1.04304 0.96049 1.23421 0.94314 0.98183 1.03177 1.23525 1.03800 0.92127 1.03986 0.94440 0.90498 0.93442 0.96235 0.90869 1.01354 0.96802 0.92648 0.88790 0.92352 0.91669 0.87556 0.90533 0.93885 0.93046 0.95445 0.90682 0.92079 0.92863 0.85544 0.86957 0.85889 0.87376 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.84 71.98 0.71 -4.37 16 2 C 0.06 2.28 5.25 86.30 0.45 2.73 16 3 N -0.53 -24.80 4.08 -905.39 -3.69 -28.49 16 4 C 0.21 11.41 4.58 85.56 0.39 11.80 16 5 C -0.52 -30.03 8.60 25.60 0.22 -29.81 16 6 H 0.05 3.15 7.63 -2.91 -0.02 3.13 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 9 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 C 0.05 2.04 3.93 85.56 0.34 2.37 16 14 C 0.52 18.50 5.82 87.66 0.51 19.01 16 15 O -0.54 -22.33 12.17 -3.03 -0.04 -22.37 16 16 N -0.58 -15.34 2.69 -797.83 -2.15 -17.49 16 17 C 0.12 2.53 4.52 86.38 0.39 2.92 16 18 C -0.11 -2.23 3.11 -10.79 -0.03 -2.27 16 19 C -0.13 -3.75 7.86 71.98 0.57 -3.19 16 20 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 21 C 0.04 0.88 5.94 44.99 0.27 1.15 16 22 C -0.15 -2.08 9.73 30.60 0.30 -1.78 16 23 C -0.20 -3.53 10.19 30.60 0.31 -3.22 16 24 H 0.04 1.55 6.87 -2.39 -0.02 1.53 16 25 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 28 H 0.07 2.87 6.00 -2.39 -0.01 2.86 16 29 H -0.03 -1.77 8.01 -2.39 -0.02 -1.79 16 30 H 0.01 0.82 6.44 -2.39 -0.02 0.80 16 31 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 32 H 0.09 3.94 7.29 -2.39 -0.02 3.92 16 33 H 0.06 2.09 7.44 -2.39 -0.02 2.08 16 34 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 35 H 0.11 1.61 6.02 -2.39 -0.01 1.60 16 36 H 0.08 1.51 5.77 -2.39 -0.01 1.49 16 37 H 0.04 1.32 7.92 -2.39 -0.02 1.31 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.03 0.95 5.93 -2.39 -0.01 0.94 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.13 2.73 6.87 -2.39 -0.02 2.72 16 44 H 0.11 1.26 6.13 -2.39 -0.01 1.25 16 45 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 47 H 0.09 1.81 6.04 -2.39 -0.01 1.80 16 Total: -1.00 -68.88 360.46 2.90 -65.97 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.93 Total: 16.50 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.54 Total: -5.19 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.56 Total: -101.72 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.04 Total: -22.37 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.88 2.90 -65.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.199 kcal (2) G-P(sol) polarization free energy of solvation -68.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds