Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46760 * 2 1 4 4 C 1.46900 * 110.99593 * 173.60940 * 3 2 1 5 5 C 1.50703 * 109.47083 * 287.06617 * 4 3 2 6 6 H 1.08005 * 120.00035 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99894 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99638 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00025 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47288 * 89.99880 * 9 7 5 11 11 H 1.48498 * 109.47335 * 209.99495 * 9 7 5 12 12 H 1.48499 * 109.47253 * 329.99750 * 9 7 5 13 13 C 1.46898 * 111.00207 * 297.56059 * 3 2 1 14 14 H 1.08999 * 109.46968 * 58.92625 * 13 3 2 15 15 C 1.53005 * 109.46994 * 178.92374 * 13 3 2 16 16 C 1.50696 * 109.47615 * 298.92615 * 13 3 2 17 17 O 1.21283 * 119.99750 * 335.04280 * 16 13 3 18 18 N 1.34773 * 120.00637 * 155.03746 * 16 13 3 19 19 C 1.46932 * 120.62389 * 4.46220 * 18 16 13 20 20 C 1.52765 * 109.00746 * 233.58258 * 19 18 16 21 21 C 1.53036 * 109.38208 * 305.58985 * 20 19 18 22 22 C 1.53000 * 109.44869 * 181.25524 * 21 20 19 23 23 C 1.53044 * 109.53713 * 61.24412 * 21 20 19 24 24 C 1.46922 * 120.63789 * 184.74335 * 18 16 13 25 25 H 1.09000 * 109.47311 * 185.42971 * 1 2 3 26 26 H 1.09004 * 109.47044 * 305.43088 * 1 2 3 27 27 H 1.09001 * 109.47627 * 65.43463 * 1 2 3 28 28 H 1.09001 * 109.46915 * 240.00744 * 2 1 3 29 29 H 1.08998 * 109.46938 * 120.00327 * 2 1 3 30 30 H 1.09002 * 109.46908 * 167.07006 * 4 3 2 31 31 H 1.08993 * 109.47165 * 47.06605 * 4 3 2 32 32 H 0.96998 * 119.99537 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46804 * 65.95153 * 15 13 3 34 34 H 1.09000 * 109.46909 * 185.95040 * 15 13 3 35 35 H 1.08996 * 109.46911 * 305.94725 * 15 13 3 36 36 H 1.08995 * 109.58817 * 353.42193 * 19 18 16 37 37 H 1.09006 * 109.58391 * 113.84657 * 19 18 16 38 38 H 1.09002 * 109.55948 * 185.55543 * 20 19 18 39 39 H 1.08999 * 109.35941 * 65.50435 * 20 19 18 40 40 H 1.08998 * 109.46626 * 301.22288 * 21 20 19 41 41 H 1.09008 * 109.47034 * 299.94396 * 22 21 20 42 42 H 1.09003 * 109.47357 * 59.93825 * 22 21 20 43 43 H 1.08993 * 109.47677 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.49411 * 178.68038 * 23 21 20 45 45 H 1.08996 * 109.52325 * 58.59696 * 23 21 20 46 46 H 1.08996 * 109.58666 * 246.16187 * 24 18 16 47 47 H 1.09000 * 109.58098 * 6.43870 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4800 1.4271 0.1527 5 6 3.8472 1.0753 1.5713 6 1 3.0730 0.8433 2.2878 7 6 5.1714 1.0486 1.9543 8 7 5.4917 0.7412 3.1923 9 14 6.5104 1.4492 0.7150 10 1 6.7896 2.9075 0.7420 11 1 7.7459 0.7023 1.0623 12 1 6.0601 1.0565 -0.6445 13 6 1.5968 2.0929 -1.2158 14 1 0.5086 2.0905 -1.2777 15 6 2.1016 3.5364 -1.1670 16 6 2.1703 1.4007 -2.4253 17 8 3.1805 0.7375 -2.3222 18 7 1.5608 1.5186 -3.6215 19 6 0.3933 2.3959 -3.7834 20 6 -0.7522 1.5918 -4.3958 21 6 -0.2747 0.9345 -5.6927 22 6 -1.4298 0.1543 -6.3236 23 6 0.8797 -0.0225 -5.3866 24 6 2.0471 0.7677 -4.7869 25 1 -0.3634 -1.0230 0.0972 26 1 -0.3633 0.5958 0.8374 27 1 -0.3634 0.4272 -0.9346 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8407 2.4295 -0.0781 31 1 3.9374 0.7104 -0.5293 32 1 6.4233 0.7228 3.4618 33 1 3.1907 3.5421 -1.2117 34 1 1.7003 4.0905 -2.0156 35 1 1.7735 4.0049 -0.2392 36 1 0.0882 2.7814 -2.8106 37 1 0.6480 3.2249 -4.4438 38 1 -1.5896 2.2555 -4.6112 39 1 -1.0693 0.8216 -3.6928 40 1 0.0654 1.7037 -6.3860 41 1 -1.7698 -0.6154 -5.6306 42 1 -2.2522 0.8356 -6.5417 43 1 -1.0904 -0.3137 -7.2476 44 1 1.2038 -0.5078 -6.3073 45 1 0.5477 -0.7778 -4.6744 46 1 2.4395 1.4611 -5.5306 47 1 2.8346 0.0810 -4.4763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = -32.496659 kcal Electronic energy + Delta-G solvation = -24321.684658 eV Core-core repulsion = 21118.441382 eV Total energy + Delta-G solvation = -3203.243276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48233 -38.26905 -36.15419 -34.07127 -32.49470 -31.89522 -31.04406 -29.59093 -28.29499 -26.51167 -24.39332 -23.49362 -22.64883 -21.96495 -20.90670 -19.91667 -18.48621 -17.20565 -16.50032 -15.78546 -15.34022 -15.00098 -14.65247 -14.53706 -14.36651 -14.19669 -13.64942 -13.52229 -13.49176 -13.05323 -12.72738 -12.41888 -12.26410 -12.13885 -12.06717 -11.86093 -11.66677 -11.39134 -11.32995 -11.19177 -11.00610 -10.87034 -10.69088 -10.60229 -10.51841 -10.18669 -9.92722 -9.70837 -9.56095 -9.12014 -8.54987 -8.40116 -7.16894 -5.91060 -3.85288 2.93818 3.11393 3.40422 3.47828 3.60774 4.44877 4.47031 4.56250 4.58481 4.68092 4.84697 4.96143 5.07059 5.19468 5.24738 5.34180 5.38625 5.42176 5.44339 5.49078 5.56314 5.59683 5.67893 5.71101 5.75533 5.78123 5.86302 5.90189 5.91735 5.91993 6.07863 6.17082 6.17257 6.30939 6.51107 6.60489 6.68041 6.78204 7.07188 7.36158 7.58723 7.78776 7.97384 8.07555 8.54368 8.80632 9.18061 9.72828 11.22360 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.004913 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.508073 B = 5698.167096 C = 6047.077754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.496 5.496 4 C 0.144 3.856 5 C -0.503 4.503 6 H 0.077 0.923 7 C 0.068 3.932 8 N -0.906 5.906 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.061 3.939 14 H 0.095 0.905 15 C -0.141 4.141 16 C 0.486 3.514 17 O -0.522 6.522 18 N -0.619 5.619 19 C 0.106 3.894 20 C -0.131 4.131 21 C -0.092 4.092 22 C -0.146 4.146 23 C -0.128 4.128 24 C 0.109 3.891 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.023 0.977 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 2.758 -19.406 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.218 5.218 4 C 0.018 3.982 5 C -0.541 4.541 6 H 0.095 0.905 7 C -0.133 4.133 8 N -0.546 5.546 9 Si 0.693 3.307 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.183 1.183 13 C -0.052 4.052 14 H 0.112 0.888 15 C -0.199 4.199 16 C 0.274 3.726 17 O -0.397 6.397 18 N -0.355 5.355 19 C -0.018 4.018 20 C -0.170 4.170 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.166 4.166 24 C -0.014 4.014 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.399 2.605 -18.778 23.806 hybrid contribution 1.105 -0.209 -1.370 1.773 sum -13.294 2.395 -20.148 24.257 Atomic orbital electron populations 1.21844 0.96645 1.00879 1.01038 1.22076 0.93691 0.90202 1.01965 1.62592 1.16471 1.14239 1.28547 1.20563 0.82344 0.97218 0.98063 1.21106 0.93018 1.45629 0.94369 0.90487 1.24825 0.98342 0.95160 0.94925 1.69904 1.17824 1.50118 1.16801 0.86964 0.81821 0.78548 0.83334 1.20446 1.21456 1.18340 1.22064 1.00207 0.95794 0.87168 0.88774 1.21837 1.02501 0.93179 1.02356 1.22707 0.84089 0.81330 0.84510 1.90719 1.23944 1.40964 1.84056 1.48468 1.31413 1.45909 1.09722 1.21678 0.85563 0.92504 1.02020 1.21935 0.97729 1.00089 0.97206 1.21110 0.95506 0.97718 0.96688 1.21825 0.97880 1.00151 1.00504 1.21970 0.95510 0.98172 1.00967 1.21500 0.96804 0.95583 0.87552 0.93060 0.91864 0.94171 0.95224 0.89342 0.95959 0.94950 0.92928 0.91581 0.92804 0.90210 0.89247 0.91629 0.90763 0.91363 0.91155 0.92667 0.92685 0.92745 0.91065 0.91539 0.92154 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.59 37.16 0.36 -1.91 16 2 C 0.05 0.99 5.23 -3.82 -0.02 0.97 16 3 N -0.50 -10.64 4.49 -229.47 -1.03 -11.67 16 4 C 0.14 3.72 2.81 -4.97 -0.01 3.70 16 5 C -0.50 -14.97 9.08 -34.44 -0.31 -15.28 16 6 H 0.08 2.47 7.84 -52.48 -0.41 2.06 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.91 -28.91 13.96 55.43 0.77 -28.14 16 9 Si 0.87 23.06 27.47 -169.99 -4.67 18.39 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.26 -6.99 6.54 56.52 0.37 -6.62 16 13 C 0.06 1.03 1.67 -68.87 -0.11 0.92 16 14 H 0.09 1.35 4.75 -51.93 -0.25 1.10 16 15 C -0.14 -2.21 8.58 37.16 0.32 -1.89 16 16 C 0.49 8.61 5.87 -10.99 -0.06 8.55 16 17 O -0.52 -11.72 11.92 5.55 0.07 -11.66 16 18 N -0.62 -8.29 2.98 -173.03 -0.52 -8.80 16 19 C 0.11 1.02 5.88 -3.93 -0.02 0.99 16 20 C -0.13 -1.06 5.34 -26.83 -0.14 -1.20 16 21 C -0.09 -0.72 2.68 -90.58 -0.24 -0.96 16 22 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 23 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 24 C 0.11 1.32 6.42 -3.71 -0.02 1.30 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.55 6.72 -51.93 -0.35 0.20 16 28 H 0.03 0.63 6.32 -51.93 -0.33 0.31 16 29 H 0.09 2.01 7.23 -51.93 -0.38 1.64 16 30 H 0.02 0.58 5.02 -51.93 -0.26 0.32 16 31 H 0.03 0.92 4.73 -51.93 -0.25 0.67 16 32 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 33 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 34 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 0.83 5.04 -51.93 -0.26 0.57 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 42 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.32 7.03 -51.93 -0.37 0.95 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -34.49 347.29 -8.54 -43.04 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.22 Total: -1.53 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.18 Total: -4.86 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.77 Total: -48.61 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.67 Total: 18.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.49 -8.54 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.539 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds