Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46760 * 2 1 4 4 C 1.46900 * 110.99593 * 173.60940 * 3 2 1 5 5 C 1.50703 * 109.47083 * 287.06617 * 4 3 2 6 6 H 1.08005 * 120.00035 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99894 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99638 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00025 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47288 * 89.99880 * 9 7 5 11 11 H 1.48498 * 109.47335 * 209.99495 * 9 7 5 12 12 H 1.48499 * 109.47253 * 329.99750 * 9 7 5 13 13 C 1.46898 * 111.00207 * 297.56059 * 3 2 1 14 14 H 1.08999 * 109.46968 * 58.92625 * 13 3 2 15 15 C 1.53005 * 109.46994 * 178.92374 * 13 3 2 16 16 C 1.50696 * 109.47615 * 298.92615 * 13 3 2 17 17 O 1.21283 * 119.99750 * 335.04280 * 16 13 3 18 18 N 1.34773 * 120.00637 * 155.03746 * 16 13 3 19 19 C 1.46932 * 120.62389 * 4.46220 * 18 16 13 20 20 C 1.52765 * 109.00746 * 233.58258 * 19 18 16 21 21 C 1.53036 * 109.38208 * 305.58985 * 20 19 18 22 22 C 1.53000 * 109.44869 * 181.25524 * 21 20 19 23 23 C 1.53044 * 109.53713 * 61.24412 * 21 20 19 24 24 C 1.46922 * 120.63789 * 184.74335 * 18 16 13 25 25 H 1.09000 * 109.47311 * 185.42971 * 1 2 3 26 26 H 1.09004 * 109.47044 * 305.43088 * 1 2 3 27 27 H 1.09001 * 109.47627 * 65.43463 * 1 2 3 28 28 H 1.09001 * 109.46915 * 240.00744 * 2 1 3 29 29 H 1.08998 * 109.46938 * 120.00327 * 2 1 3 30 30 H 1.09002 * 109.46908 * 167.07006 * 4 3 2 31 31 H 1.08993 * 109.47165 * 47.06605 * 4 3 2 32 32 H 0.96998 * 119.99537 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.46804 * 65.95153 * 15 13 3 34 34 H 1.09000 * 109.46909 * 185.95040 * 15 13 3 35 35 H 1.08996 * 109.46911 * 305.94725 * 15 13 3 36 36 H 1.08995 * 109.58817 * 353.42193 * 19 18 16 37 37 H 1.09006 * 109.58391 * 113.84657 * 19 18 16 38 38 H 1.09002 * 109.55948 * 185.55543 * 20 19 18 39 39 H 1.08999 * 109.35941 * 65.50435 * 20 19 18 40 40 H 1.08998 * 109.46626 * 301.22288 * 21 20 19 41 41 H 1.09008 * 109.47034 * 299.94396 * 22 21 20 42 42 H 1.09003 * 109.47357 * 59.93825 * 22 21 20 43 43 H 1.08993 * 109.47677 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.49411 * 178.68038 * 23 21 20 45 45 H 1.08996 * 109.52325 * 58.59696 * 23 21 20 46 46 H 1.08996 * 109.58666 * 246.16187 * 24 18 16 47 47 H 1.09000 * 109.58098 * 6.43870 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4800 1.4271 0.1527 5 6 3.8472 1.0753 1.5713 6 1 3.0730 0.8433 2.2878 7 6 5.1714 1.0486 1.9543 8 7 5.4917 0.7412 3.1923 9 14 6.5104 1.4492 0.7150 10 1 6.7896 2.9075 0.7420 11 1 7.7459 0.7023 1.0623 12 1 6.0601 1.0565 -0.6445 13 6 1.5968 2.0929 -1.2158 14 1 0.5086 2.0905 -1.2777 15 6 2.1016 3.5364 -1.1670 16 6 2.1703 1.4007 -2.4253 17 8 3.1805 0.7375 -2.3222 18 7 1.5608 1.5186 -3.6215 19 6 0.3933 2.3959 -3.7834 20 6 -0.7522 1.5918 -4.3958 21 6 -0.2747 0.9345 -5.6927 22 6 -1.4298 0.1543 -6.3236 23 6 0.8797 -0.0225 -5.3866 24 6 2.0471 0.7677 -4.7869 25 1 -0.3634 -1.0230 0.0972 26 1 -0.3633 0.5958 0.8374 27 1 -0.3634 0.4272 -0.9346 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8407 2.4295 -0.0781 31 1 3.9374 0.7104 -0.5293 32 1 6.4233 0.7228 3.4618 33 1 3.1907 3.5421 -1.2117 34 1 1.7003 4.0905 -2.0156 35 1 1.7735 4.0049 -0.2392 36 1 0.0882 2.7814 -2.8106 37 1 0.6480 3.2249 -4.4438 38 1 -1.5896 2.2555 -4.6112 39 1 -1.0693 0.8216 -3.6928 40 1 0.0654 1.7037 -6.3860 41 1 -1.7698 -0.6154 -5.6306 42 1 -2.2522 0.8356 -6.5417 43 1 -1.0904 -0.3137 -7.2476 44 1 1.2038 -0.5078 -6.3073 45 1 0.5477 -0.7778 -4.6744 46 1 2.4395 1.4611 -5.5306 47 1 2.8346 0.0810 -4.4763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = -56.675268 kcal Electronic energy + Delta-G solvation = -24322.733121 eV Core-core repulsion = 21118.441382 eV Total energy + Delta-G solvation = -3204.291739 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75016 -39.34606 -37.64655 -35.11957 -34.70478 -33.14301 -32.09098 -31.28289 -29.14103 -28.30748 -25.62422 -24.25874 -23.90215 -23.71721 -22.22084 -20.95878 -19.68334 -19.10618 -18.16227 -17.08439 -16.74083 -16.44577 -15.95581 -15.77439 -15.43268 -15.33615 -15.16076 -14.70426 -14.53200 -14.44114 -14.21444 -14.02716 -13.59690 -13.16535 -13.12379 -12.97643 -12.80490 -12.73959 -12.65481 -12.50279 -12.38685 -12.15823 -12.02575 -11.87719 -11.81210 -11.54731 -11.46391 -11.32230 -11.30679 -10.92534 -10.74691 -9.63060 -8.90761 -8.29143 -6.27550 1.26097 1.29875 1.46540 1.60166 2.03299 2.33229 3.04663 3.11943 3.57331 3.78305 3.85634 3.93516 4.00584 4.12865 4.14770 4.25033 4.32908 4.39939 4.46179 4.56381 4.58897 4.71718 4.77222 4.77841 4.84080 4.85033 4.93207 4.93686 4.97952 5.04212 5.09230 5.11120 5.18456 5.23142 5.25574 5.27338 5.37619 5.41793 5.54326 5.59883 5.66169 5.96046 6.27177 6.41329 6.62091 6.75903 7.24128 7.34415 8.87824 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025140 B = 0.004913 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.508073 B = 5698.167096 C = 6047.077754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 N -0.507 5.507 4 C 0.163 3.837 5 C -0.508 4.508 6 H 0.040 0.960 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.935 3.065 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.269 1.269 13 C 0.059 3.941 14 H 0.131 0.869 15 C -0.138 4.138 16 C 0.482 3.518 17 O -0.581 6.581 18 N -0.609 5.609 19 C 0.095 3.905 20 C -0.127 4.127 21 C -0.088 4.088 22 C -0.143 4.143 23 C -0.121 4.121 24 C 0.105 3.895 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.013 0.987 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.173 4.592 -22.350 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.230 5.230 4 C 0.036 3.964 5 C -0.547 4.547 6 H 0.058 0.942 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.759 3.241 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.194 1.194 13 C -0.053 4.053 14 H 0.149 0.851 15 C -0.196 4.196 16 C 0.270 3.730 17 O -0.461 6.461 18 N -0.343 5.343 19 C -0.026 4.026 20 C -0.165 4.165 21 C -0.107 4.107 22 C -0.201 4.201 23 C -0.159 4.159 24 C -0.018 4.018 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.709 4.467 -21.763 27.799 hybrid contribution 1.694 -0.800 -0.508 1.941 sum -15.015 3.668 -22.270 27.109 Atomic orbital electron populations 1.21732 0.92344 1.02454 1.02418 1.22009 0.97086 0.89323 0.99189 1.62460 1.13466 1.15042 1.32004 1.20141 0.85478 0.96202 0.94574 1.21377 0.92399 1.45100 0.95793 0.94215 1.25640 1.00803 0.95169 0.96745 1.70032 1.18655 1.51525 1.18700 0.85886 0.78847 0.79328 0.80002 1.18440 1.20461 1.19353 1.22246 1.02073 0.95765 0.85226 0.85146 1.21854 1.00623 0.92657 1.04456 1.22628 0.83645 0.80829 0.85909 1.90699 1.26640 1.43645 1.85111 1.48475 1.31702 1.45509 1.08591 1.22060 0.84511 0.92703 1.03316 1.21936 0.97745 1.00092 0.96762 1.21112 0.94962 0.97569 0.97042 1.21790 0.97774 1.00131 1.00357 1.21924 0.95222 0.97934 1.00816 1.21603 0.97207 0.95622 0.87332 0.91304 0.91574 0.91681 0.96881 0.93347 0.95830 0.97313 0.92542 0.94627 0.88360 0.90073 0.88457 0.89243 0.87950 0.92421 0.89905 0.93388 0.91344 0.92380 0.89691 0.93280 0.90342 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.59 71.98 0.69 -3.21 16 2 C 0.05 2.18 5.23 86.30 0.45 2.63 16 3 N -0.51 -22.14 4.49 -879.92 -3.95 -26.09 16 4 C 0.16 8.73 2.81 85.56 0.24 8.97 16 5 C -0.51 -31.73 9.08 25.60 0.23 -31.49 16 6 H 0.04 2.70 7.84 -2.91 -0.02 2.68 16 7 C 0.01 0.83 5.47 84.65 0.46 1.30 16 8 N -0.95 -62.38 13.96 21.45 0.30 -62.08 16 9 Si 0.93 49.19 27.47 68.60 1.88 51.07 16 10 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.27 -14.52 6.54 99.48 0.65 -13.87 16 13 C 0.06 1.93 1.67 44.17 0.07 2.00 16 14 H 0.13 3.28 4.75 -2.39 -0.01 3.27 16 15 C -0.14 -4.05 8.58 71.98 0.62 -3.43 16 16 C 0.48 16.82 5.87 87.66 0.51 17.33 16 17 O -0.58 -27.03 11.92 -3.04 -0.04 -27.06 16 18 N -0.61 -15.09 2.98 -819.74 -2.44 -17.54 16 19 C 0.10 1.43 5.88 86.22 0.51 1.94 16 20 C -0.13 -1.48 5.34 30.53 0.16 -1.32 16 21 C -0.09 -1.05 2.68 -10.77 -0.03 -1.08 16 22 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 23 C -0.12 -2.06 5.36 30.67 0.16 -1.89 16 24 C 0.11 2.43 6.42 86.36 0.55 2.99 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.59 6.72 -2.39 -0.02 1.57 16 28 H 0.01 0.58 6.32 -2.39 -0.02 0.57 16 29 H 0.05 2.36 7.23 -2.39 -0.02 2.34 16 30 H 0.02 1.26 5.02 -2.39 -0.01 1.25 16 31 H 0.01 0.54 4.73 -2.39 -0.01 0.53 16 32 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 33 H 0.03 1.26 6.35 -2.39 -0.02 1.24 16 34 H 0.10 1.96 7.36 -2.39 -0.02 1.94 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.10 1.32 5.04 -2.39 -0.01 1.31 16 37 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.66 7.03 -2.39 -0.02 1.65 16 Total: -1.00 -80.59 347.29 1.93 -78.65 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.87 Total: 9.08 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.31 Total: -6.04 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -6.09 Total: -105.71 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.88 Total: 51.07 kcal Total: -80.59 1.93 -78.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.978 kcal (2) G-P(sol) polarization free energy of solvation -80.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds