Wall clock time and date at job start Tue Mar 31 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47456 * 2 1 4 4 C 1.46900 * 111.00124 * 287.02176 * 3 2 1 5 5 C 1.50693 * 109.47346 * 161.99946 * 4 3 2 6 6 H 1.07999 * 120.00261 * 4.61266 * 5 4 3 7 7 C 1.37879 * 120.00135 * 184.61918 * 5 4 3 8 8 N 1.31514 * 119.99814 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47034 * 60.00301 * 9 7 5 11 11 H 1.48502 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47033 * 300.00024 * 9 7 5 13 13 C 1.46900 * 111.00277 * 163.06383 * 3 2 1 14 14 H 1.09003 * 109.47291 * 178.95620 * 13 3 2 15 15 C 1.52992 * 109.46959 * 58.95279 * 13 3 2 16 16 C 1.50701 * 109.47033 * 298.95485 * 13 3 2 17 17 O 1.21281 * 120.00294 * 9.40979 * 16 13 3 18 18 N 1.34774 * 119.99876 * 189.40705 * 16 13 3 19 19 C 1.46933 * 120.63193 * 175.36680 * 18 16 13 20 20 C 1.53183 * 108.89368 * 233.51650 * 19 18 16 21 21 C 1.53070 * 109.29854 * 305.57746 * 20 19 18 22 22 C 1.52996 * 109.44322 * 181.23689 * 21 20 19 23 23 C 1.53041 * 109.65644 * 61.15223 * 21 20 19 24 24 C 1.46921 * 120.63437 * 355.34922 * 18 16 13 25 25 H 1.08994 * 109.47511 * 187.67970 * 1 2 3 26 26 H 1.08999 * 109.47242 * 307.68412 * 1 2 3 27 27 H 1.09004 * 109.46734 * 67.68056 * 1 2 3 28 28 H 1.08998 * 109.47306 * 239.99377 * 2 1 3 29 29 H 1.09004 * 109.46813 * 120.00070 * 2 1 3 30 30 H 1.09000 * 109.46464 * 282.00110 * 4 3 2 31 31 H 1.08999 * 109.46735 * 41.99283 * 4 3 2 32 32 H 0.97001 * 119.99959 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47275 * 186.11465 * 15 13 3 34 34 H 1.09001 * 109.47426 * 306.11506 * 15 13 3 35 35 H 1.09005 * 109.47333 * 66.11212 * 15 13 3 36 36 H 1.09005 * 109.58311 * 353.37929 * 19 18 16 37 37 H 1.08997 * 109.58540 * 113.65457 * 19 18 16 38 38 H 1.09005 * 109.49923 * 65.39081 * 20 19 18 39 39 H 1.09006 * 109.49745 * 185.48234 * 20 19 18 40 40 H 1.09002 * 109.34456 * 301.12699 * 21 20 19 41 41 H 1.08995 * 109.47333 * 299.79423 * 22 21 20 42 42 H 1.09004 * 109.47556 * 59.79608 * 22 21 20 43 43 H 1.09000 * 109.47153 * 179.79583 * 22 21 20 44 44 H 1.09005 * 109.49847 * 178.74740 * 23 21 20 45 45 H 1.08996 * 109.52166 * 58.67338 * 23 21 20 46 46 H 1.08999 * 109.58773 * 246.20017 * 24 18 16 47 47 H 1.09007 * 109.58188 * 6.47899 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8167 2.0151 -1.3113 5 6 1.9057 3.5126 -1.1682 6 1 2.1677 3.9495 -0.2159 7 6 1.6525 4.3251 -2.2530 8 7 1.3329 3.7932 -3.4126 9 14 1.7622 6.1814 -2.0754 10 1 3.1365 6.5584 -1.6579 11 1 1.4475 6.8227 -3.3774 12 1 0.7902 6.6388 -1.0500 13 6 3.4321 1.4439 0.3995 14 1 3.7743 2.4785 0.3731 15 6 4.2707 0.6046 -0.5664 16 6 3.5819 0.9008 1.7972 17 8 2.6466 0.3486 2.3368 18 7 4.7553 1.0287 2.4477 19 6 4.8875 0.5959 3.8456 20 6 5.4433 1.7581 4.6743 21 6 6.7458 2.2535 4.0409 22 6 7.3201 3.3943 4.8834 23 6 6.4695 2.7565 2.6222 24 6 5.9269 1.6032 1.7725 25 1 -0.3634 -1.0184 0.1373 26 1 -0.3634 0.6282 0.8133 27 1 -0.3633 0.3903 -0.9507 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.5851 1.6699 -2.0031 31 1 0.8335 1.7446 -1.6961 32 1 1.1544 4.3648 -4.1757 33 1 5.2996 0.5592 -0.2092 34 1 3.8606 -0.4038 -0.6218 35 1 4.2496 1.0603 -1.5563 36 1 3.9104 0.3058 4.2322 37 1 5.5694 -0.2525 3.9025 38 1 4.7177 2.5713 4.6930 39 1 5.6370 1.4193 5.6921 40 1 7.4632 1.4338 4.0024 41 1 6.6031 4.2143 4.9217 42 1 7.5169 3.0363 5.8939 43 1 8.2495 3.7450 4.4347 44 1 7.3944 3.1292 2.1817 45 1 5.7338 3.5600 2.6574 46 1 6.6956 0.8386 1.6606 47 1 5.6362 1.9756 0.7901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081039618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:58 Heat of formation + Delta-G solvation = -34.227775 kcal Electronic energy + Delta-G solvation = -24013.252714 eV Core-core repulsion = 20809.934371 eV Total energy + Delta-G solvation = -3203.318343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29742 -38.06148 -36.35869 -34.02288 -32.63151 -31.79461 -30.71428 -28.83283 -28.16361 -26.21367 -24.55262 -23.35036 -22.82693 -22.36433 -20.66834 -19.54004 -18.52847 -16.74152 -16.26051 -15.78937 -15.25542 -14.90056 -14.64234 -14.41902 -14.24562 -13.91894 -13.77153 -13.50833 -13.22409 -13.12761 -12.65784 -12.30940 -12.09323 -11.96155 -11.85014 -11.67315 -11.44542 -11.25452 -11.20291 -10.99970 -10.95552 -10.83247 -10.68483 -10.54050 -10.48322 -10.43702 -10.06403 -9.80190 -9.22286 -8.77368 -8.44026 -8.37749 -7.11683 -5.99726 -4.00687 3.03000 3.17436 3.33558 3.38362 3.41566 4.44292 4.57779 4.60293 4.67784 4.90910 4.99299 5.08376 5.20597 5.31398 5.36241 5.38015 5.49385 5.51680 5.58149 5.67083 5.68617 5.72557 5.78916 5.87147 5.94996 5.98048 6.01112 6.01723 6.04812 6.21400 6.29380 6.30206 6.37453 6.53833 6.62007 6.68704 6.90254 7.02814 7.31163 7.42065 7.61477 7.85437 8.17121 8.27457 8.56742 8.64600 9.06262 9.63005 11.10578 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.005576 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.136474 B = 5020.134756 C = 6280.164312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.036 3.964 3 N -0.514 5.514 4 C 0.188 3.812 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.075 3.925 14 H 0.110 0.890 15 C -0.187 4.187 16 C 0.525 3.475 17 O -0.526 6.526 18 N -0.618 5.618 19 C 0.113 3.887 20 C -0.129 4.129 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.133 4.133 24 C 0.102 3.898 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.090 0.910 30 H -0.004 1.004 31 H 0.038 0.962 32 H 0.261 0.739 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.663 -5.213 12.451 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 N -0.238 5.238 4 C 0.064 3.936 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.037 4.037 14 H 0.128 0.872 15 C -0.246 4.246 16 C 0.314 3.686 17 O -0.401 6.401 18 N -0.353 5.353 19 C -0.010 4.010 20 C -0.167 4.167 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.171 4.171 24 C -0.021 4.021 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.790 -5.201 12.883 18.222 hybrid contribution 0.595 0.724 -0.674 1.154 sum 12.384 -4.477 12.209 17.958 Atomic orbital electron populations 1.21644 0.95839 0.99694 1.02142 1.22358 0.95975 0.90639 1.00183 1.62128 1.12705 1.15756 1.33225 1.19873 0.96882 0.94062 0.82828 1.21128 1.46361 0.90881 0.95954 0.92225 1.24957 0.95510 0.98721 0.95265 1.69945 1.47754 1.35282 1.00853 0.86618 0.78491 0.85490 0.77139 1.20354 1.21399 1.20224 1.21486 0.91883 1.00722 0.89613 0.87236 1.22552 0.99458 1.00753 1.01798 1.21053 0.80995 0.78015 0.88510 1.90544 1.38557 1.42564 1.68464 1.48139 1.11044 1.63464 1.12674 1.21475 1.02284 0.95879 0.81364 1.21988 0.97229 0.98827 0.98694 1.21114 0.96849 0.98064 0.94974 1.21825 1.00750 0.98371 0.99446 1.22015 1.01616 0.98380 0.95083 1.21902 0.87708 0.95437 0.97030 0.93969 0.92222 0.93028 0.96861 0.89196 0.98673 0.94360 0.92933 0.92385 0.92528 0.90293 0.89174 0.92205 0.91379 0.91078 0.91275 0.92592 0.92837 0.92706 0.90763 0.91033 0.91702 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.86 37.16 0.37 -2.30 16 2 C 0.04 0.75 4.25 -3.83 -0.02 0.73 16 3 N -0.51 -11.59 4.23 -229.48 -0.97 -12.56 16 4 C 0.19 4.87 4.46 -4.98 -0.02 4.85 16 5 C -0.50 -14.03 8.63 -34.44 -0.30 -14.33 16 6 H 0.06 1.66 7.52 -52.49 -0.39 1.26 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.08 1.45 1.82 -68.87 -0.13 1.32 16 14 H 0.11 2.20 6.52 -51.93 -0.34 1.86 16 15 C -0.19 -3.10 8.11 37.15 0.30 -2.80 16 16 C 0.53 9.42 6.78 -10.99 -0.07 9.35 16 17 O -0.53 -10.90 13.07 5.56 0.07 -10.83 16 18 N -0.62 -8.61 2.97 -172.77 -0.51 -9.13 16 19 C 0.11 1.34 6.41 -3.71 -0.02 1.32 16 20 C -0.13 -1.28 5.37 -26.60 -0.14 -1.42 16 21 C -0.09 -0.81 2.68 -90.56 -0.24 -1.05 16 22 C -0.15 -1.16 9.19 37.16 0.34 -0.81 16 23 C -0.13 -1.32 5.36 -26.62 -0.14 -1.46 16 24 C 0.10 1.16 5.09 -3.72 -0.02 1.14 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.06 6.85 -51.93 -0.36 0.71 16 28 H 0.01 0.27 7.05 -51.93 -0.37 -0.10 16 29 H 0.09 1.86 4.99 -51.93 -0.26 1.60 16 30 H 0.00 -0.12 6.04 -51.93 -0.31 -0.43 16 31 H 0.04 1.08 6.45 -51.93 -0.33 0.75 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 0.78 5.62 -51.93 -0.29 0.48 16 34 H 0.06 0.95 6.46 -51.93 -0.34 0.61 16 35 H 0.08 1.44 6.55 -51.93 -0.34 1.10 16 36 H 0.09 1.23 7.03 -51.93 -0.37 0.87 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.10 1.18 4.64 -51.93 -0.24 0.94 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -31.13 349.63 -8.77 -39.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.14 Total: 0.53 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.19 Total: -3.99 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.75 Total: -47.38 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.13 -8.77 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.671 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds