Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47456 * 2 1 4 4 C 1.46900 * 111.00124 * 287.02176 * 3 2 1 5 5 C 1.50693 * 109.47346 * 161.99946 * 4 3 2 6 6 H 1.07999 * 120.00261 * 4.61266 * 5 4 3 7 7 C 1.37879 * 120.00135 * 184.61918 * 5 4 3 8 8 N 1.31514 * 119.99814 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00071 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47034 * 60.00301 * 9 7 5 11 11 H 1.48502 * 109.47062 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47033 * 300.00024 * 9 7 5 13 13 C 1.46900 * 111.00277 * 163.06383 * 3 2 1 14 14 H 1.09003 * 109.47291 * 178.95620 * 13 3 2 15 15 C 1.52992 * 109.46959 * 58.95279 * 13 3 2 16 16 C 1.50701 * 109.47033 * 298.95485 * 13 3 2 17 17 O 1.21281 * 120.00294 * 9.40979 * 16 13 3 18 18 N 1.34774 * 119.99876 * 189.40705 * 16 13 3 19 19 C 1.46933 * 120.63193 * 175.36680 * 18 16 13 20 20 C 1.53183 * 108.89368 * 233.51650 * 19 18 16 21 21 C 1.53070 * 109.29854 * 305.57746 * 20 19 18 22 22 C 1.52996 * 109.44322 * 181.23689 * 21 20 19 23 23 C 1.53041 * 109.65644 * 61.15223 * 21 20 19 24 24 C 1.46921 * 120.63437 * 355.34922 * 18 16 13 25 25 H 1.08994 * 109.47511 * 187.67970 * 1 2 3 26 26 H 1.08999 * 109.47242 * 307.68412 * 1 2 3 27 27 H 1.09004 * 109.46734 * 67.68056 * 1 2 3 28 28 H 1.08998 * 109.47306 * 239.99377 * 2 1 3 29 29 H 1.09004 * 109.46813 * 120.00070 * 2 1 3 30 30 H 1.09000 * 109.46464 * 282.00110 * 4 3 2 31 31 H 1.08999 * 109.46735 * 41.99283 * 4 3 2 32 32 H 0.97001 * 119.99959 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47275 * 186.11465 * 15 13 3 34 34 H 1.09001 * 109.47426 * 306.11506 * 15 13 3 35 35 H 1.09005 * 109.47333 * 66.11212 * 15 13 3 36 36 H 1.09005 * 109.58311 * 353.37929 * 19 18 16 37 37 H 1.08997 * 109.58540 * 113.65457 * 19 18 16 38 38 H 1.09005 * 109.49923 * 65.39081 * 20 19 18 39 39 H 1.09006 * 109.49745 * 185.48234 * 20 19 18 40 40 H 1.09002 * 109.34456 * 301.12699 * 21 20 19 41 41 H 1.08995 * 109.47333 * 299.79423 * 22 21 20 42 42 H 1.09004 * 109.47556 * 59.79608 * 22 21 20 43 43 H 1.09000 * 109.47153 * 179.79583 * 22 21 20 44 44 H 1.09005 * 109.49847 * 178.74740 * 23 21 20 45 45 H 1.08996 * 109.52166 * 58.67338 * 23 21 20 46 46 H 1.08999 * 109.58773 * 246.20017 * 24 18 16 47 47 H 1.09007 * 109.58188 * 6.47899 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8167 2.0151 -1.3113 5 6 1.9057 3.5126 -1.1682 6 1 2.1677 3.9495 -0.2159 7 6 1.6525 4.3251 -2.2530 8 7 1.3329 3.7932 -3.4126 9 14 1.7622 6.1814 -2.0754 10 1 3.1365 6.5584 -1.6579 11 1 1.4475 6.8227 -3.3774 12 1 0.7902 6.6388 -1.0500 13 6 3.4321 1.4439 0.3995 14 1 3.7743 2.4785 0.3731 15 6 4.2707 0.6046 -0.5664 16 6 3.5819 0.9008 1.7972 17 8 2.6466 0.3486 2.3368 18 7 4.7553 1.0287 2.4477 19 6 4.8875 0.5959 3.8456 20 6 5.4433 1.7581 4.6743 21 6 6.7458 2.2535 4.0409 22 6 7.3201 3.3943 4.8834 23 6 6.4695 2.7565 2.6222 24 6 5.9269 1.6032 1.7725 25 1 -0.3634 -1.0184 0.1373 26 1 -0.3634 0.6282 0.8133 27 1 -0.3633 0.3903 -0.9507 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 2.5851 1.6699 -2.0031 31 1 0.8335 1.7446 -1.6961 32 1 1.1544 4.3648 -4.1757 33 1 5.2996 0.5592 -0.2092 34 1 3.8606 -0.4038 -0.6218 35 1 4.2496 1.0603 -1.5563 36 1 3.9104 0.3058 4.2322 37 1 5.5694 -0.2525 3.9025 38 1 4.7177 2.5713 4.6930 39 1 5.6370 1.4193 5.6921 40 1 7.4632 1.4338 4.0024 41 1 6.6031 4.2143 4.9217 42 1 7.5169 3.0363 5.8939 43 1 8.2495 3.7450 4.4347 44 1 7.3944 3.1292 2.1817 45 1 5.7338 3.5600 2.6574 46 1 6.6956 0.8386 1.6606 47 1 5.6362 1.9756 0.7901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = -53.585063 kcal Electronic energy + Delta-G solvation = -24014.092109 eV Core-core repulsion = 20809.934371 eV Total energy + Delta-G solvation = -3204.157738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.59784 -39.26539 -37.89582 -35.09786 -34.74541 -33.08646 -31.87053 -30.58032 -29.12468 -28.06808 -25.93443 -24.51753 -24.25021 -23.73487 -21.85557 -20.84512 -19.83073 -18.40719 -18.08272 -17.19523 -16.66731 -16.45073 -15.89790 -15.56168 -15.48168 -15.25303 -15.08907 -14.67605 -14.59118 -14.31743 -14.18775 -13.71318 -13.44200 -13.29909 -13.13858 -12.93775 -12.77578 -12.69887 -12.62657 -12.60606 -12.48139 -12.20771 -12.11068 -11.99624 -11.77633 -11.58834 -11.32640 -11.27727 -11.23299 -10.56012 -10.27482 -9.58960 -8.90759 -8.16181 -6.25639 1.40991 1.44276 1.51920 1.62905 1.99733 2.42085 3.14656 3.32689 3.54948 3.82348 3.88628 3.94151 4.12660 4.16466 4.18924 4.31243 4.35818 4.46346 4.53480 4.55635 4.63497 4.72872 4.75916 4.78434 4.82142 4.87255 4.93623 4.97458 5.00082 5.04770 5.12648 5.13324 5.18491 5.25449 5.31152 5.36281 5.39292 5.39546 5.55893 5.67383 5.69610 6.11488 6.27615 6.51770 6.66006 6.88381 7.24050 7.43149 8.93749 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.005576 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.136474 B = 5020.134756 C = 6280.164312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.040 3.960 3 N -0.531 5.531 4 C 0.206 3.794 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.962 3.038 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.073 3.927 14 H 0.096 0.904 15 C -0.174 4.174 16 C 0.524 3.476 17 O -0.561 6.561 18 N -0.609 5.609 19 C 0.110 3.890 20 C -0.124 4.124 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.130 4.130 24 C 0.095 3.905 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.015 0.985 29 H 0.095 0.905 30 H -0.019 1.019 31 H 0.007 0.993 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.095 0.905 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.131 -5.069 13.825 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 N -0.255 5.255 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.201 1.201 13 C -0.039 4.039 14 H 0.114 0.886 15 C -0.233 4.233 16 C 0.313 3.687 17 O -0.440 6.440 18 N -0.342 5.342 19 C -0.012 4.012 20 C -0.162 4.162 21 C -0.105 4.105 22 C -0.201 4.201 23 C -0.168 4.168 24 C -0.027 4.027 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.113 0.887 30 H -0.001 1.001 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.314 -5.053 14.282 20.842 hybrid contribution -0.129 0.647 -1.052 1.242 sum 14.184 -4.407 13.230 19.891 Atomic orbital electron populations 1.21605 0.95348 1.01257 1.00553 1.22372 0.96436 0.89639 1.00341 1.62011 1.15491 1.16948 1.31053 1.19489 0.94601 0.93637 0.84209 1.21370 1.46513 0.92019 0.95863 0.92723 1.25795 0.94890 1.03615 0.94779 1.70067 1.48435 1.37087 1.01609 0.85552 0.79080 0.79489 0.77196 1.18788 1.20783 1.20110 1.21467 0.90297 1.00678 0.91436 0.88591 1.22422 1.01148 0.99680 1.00022 1.20722 0.81934 0.78060 0.87973 1.90519 1.40047 1.44494 1.68970 1.48166 1.10430 1.62159 1.13475 1.21666 1.01944 0.97581 0.80036 1.21963 0.97265 0.97289 0.99666 1.21112 0.96442 0.98946 0.94045 1.21798 1.00746 0.97607 0.99992 1.22011 1.01813 0.97090 0.95933 1.22153 0.87187 0.96804 0.96568 0.90793 0.93557 0.94750 0.96694 0.88705 1.00094 0.97467 0.92741 0.88744 0.92660 0.92360 0.91377 0.89626 0.93586 0.88850 0.89404 0.93777 0.91745 0.91722 0.88607 0.93291 0.88683 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.86 71.98 0.71 -4.51 16 2 C 0.04 1.67 4.25 86.30 0.37 2.03 16 3 N -0.53 -24.74 4.23 -879.95 -3.72 -28.46 16 4 C 0.21 11.14 4.46 85.55 0.38 11.52 16 5 C -0.52 -29.65 8.63 25.60 0.22 -29.43 16 6 H 0.05 3.11 7.52 -2.91 -0.02 3.08 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 9 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.07 2.85 1.82 44.17 0.08 2.94 16 14 H 0.10 3.96 6.52 -2.39 -0.02 3.94 16 15 C -0.17 -5.75 8.11 71.98 0.58 -5.17 16 16 C 0.52 18.78 6.78 87.66 0.59 19.38 16 17 O -0.56 -23.53 13.07 -3.03 -0.04 -23.57 16 18 N -0.61 -16.14 2.97 -818.93 -2.44 -18.58 16 19 C 0.11 2.41 6.41 86.36 0.55 2.96 16 20 C -0.12 -2.19 5.37 30.68 0.16 -2.02 16 21 C -0.09 -1.26 2.68 -10.76 -0.03 -1.29 16 22 C -0.14 -1.85 9.19 71.98 0.66 -1.19 16 23 C -0.13 -2.27 5.36 30.67 0.16 -2.11 16 24 C 0.09 1.91 5.09 86.36 0.44 2.35 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.46 6.85 -2.38 -0.02 1.45 16 28 H 0.01 0.62 7.05 -2.39 -0.02 0.60 16 29 H 0.10 3.96 4.99 -2.39 -0.01 3.95 16 30 H -0.02 -1.03 6.04 -2.39 -0.01 -1.05 16 31 H 0.01 0.43 6.45 -2.39 -0.02 0.42 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.09 2.37 5.62 -2.39 -0.01 2.35 16 34 H 0.05 1.83 6.46 -2.39 -0.02 1.82 16 35 H 0.06 2.17 6.55 -2.38 -0.02 2.15 16 36 H 0.07 1.83 7.03 -2.38 -0.02 1.81 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.09 1.94 4.64 -2.38 -0.01 1.93 16 Total: -1.00 -69.03 349.63 2.40 -66.62 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.93 Total: 16.84 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.35 Total: -3.66 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -5.87 Total: -102.59 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -69.03 2.40 -66.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.039 kcal (2) G-P(sol) polarization free energy of solvation -69.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds