Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.46680 * 2 1 4 4 C 1.46898 * 111.00185 * 287.73021 * 3 2 1 5 5 C 1.50702 * 109.47466 * 160.36627 * 4 3 2 6 6 H 1.08002 * 119.99771 * 4.67462 * 5 4 3 7 7 C 1.37876 * 120.00358 * 184.67292 * 5 4 3 8 8 N 1.31516 * 119.99906 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47114 * 120.00071 * 9 7 5 12 12 H 1.48500 * 109.46942 * 240.00025 * 9 7 5 13 13 C 1.46898 * 110.99633 * 163.77817 * 3 2 1 14 14 C 1.50702 * 109.47309 * 293.94932 * 13 3 2 15 15 O 1.21280 * 119.99663 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00116 * 180.02562 * 14 13 3 17 17 C 1.46497 * 120.00148 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47293 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46669 * 65.00018 * 18 17 16 20 20 C 1.53005 * 109.46669 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46991 * 299.99945 * 20 19 18 22 22 C 1.52989 * 109.47357 * 60.00133 * 21 20 19 23 23 C 1.53002 * 109.47449 * 300.00049 * 22 21 20 24 24 H 1.08995 * 109.47249 * 59.21682 * 1 2 3 25 25 H 1.09004 * 109.46973 * 179.21941 * 1 2 3 26 26 H 1.09007 * 109.46789 * 299.21346 * 1 2 3 27 27 H 1.09000 * 109.46683 * 240.00364 * 2 1 3 28 28 H 1.08995 * 109.47312 * 119.99978 * 2 1 3 29 29 H 1.09000 * 109.47387 * 280.37196 * 4 3 2 30 30 H 1.09005 * 109.47123 * 40.36730 * 4 3 2 31 31 H 0.96997 * 120.00040 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.47330 * 173.95357 * 13 3 2 33 33 H 1.09000 * 109.47229 * 53.95672 * 13 3 2 34 34 H 0.97006 * 120.00166 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47150 * 59.99951 * 17 16 14 36 36 H 1.09000 * 109.47233 * 300.00156 * 17 16 14 37 37 H 1.08996 * 109.47318 * 304.99721 * 18 17 16 38 38 H 1.08993 * 109.47354 * 299.99421 * 19 18 17 39 39 H 1.09004 * 109.47107 * 60.00261 * 19 18 17 40 40 H 1.09001 * 109.46860 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.47318 * 59.99703 * 20 19 18 42 42 H 1.09005 * 109.46961 * 299.99957 * 21 20 19 43 43 H 1.08998 * 109.46931 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.47601 * 180.02562 * 22 21 20 45 45 H 1.09005 * 109.47229 * 59.99988 * 22 21 20 46 46 H 1.09005 * 109.46855 * 300.00168 * 23 22 21 47 47 H 1.08994 * 109.47593 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8013 2.0206 -1.3063 5 6 1.8520 3.5187 -1.1508 6 1 2.1032 3.9542 -0.1950 7 6 1.5776 4.3334 -2.2288 8 7 1.2712 3.8031 -3.3926 9 14 1.6411 6.1903 -2.0362 10 1 2.0077 6.5307 -0.6380 11 1 2.6568 6.7497 -2.9639 12 1 0.3099 6.7667 -2.3537 13 6 3.4366 1.4424 0.3831 14 6 3.5868 1.0091 1.8187 15 8 2.6097 0.6840 2.4593 16 7 4.8069 0.9829 2.3905 17 6 4.9530 0.5612 3.7858 18 6 6.4289 0.6211 4.1849 19 6 6.9083 2.0736 4.1487 20 6 8.3840 2.1336 4.5484 21 6 8.5522 1.5760 5.9633 22 6 8.0728 0.1237 5.9995 23 6 6.5971 0.0635 5.5998 24 1 -0.3633 0.5259 -0.8828 25 1 -0.3633 -1.0276 -0.0140 26 1 -0.3633 0.5016 0.8970 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5785 1.7008 -2.0004 30 1 0.8253 1.7283 -1.6940 31 1 1.0785 4.3762 -4.1511 32 1 3.8021 2.4633 0.2717 33 1 4.0139 0.7777 -0.2594 34 1 5.5884 1.2433 1.8782 35 1 4.5882 -0.4599 3.8969 36 1 4.3752 1.2253 4.4286 37 1 7.0184 0.0264 3.4872 38 1 6.7881 2.4709 3.1409 39 1 6.3188 2.6683 4.8465 40 1 8.7257 3.1683 4.5222 41 1 8.9738 1.5388 3.8510 42 1 7.9624 2.1709 6.6607 43 1 9.6034 1.6192 6.2482 44 1 8.1922 -0.2734 7.0075 45 1 8.6626 -0.4712 5.3020 46 1 6.0073 0.6584 6.2972 47 1 6.2556 -0.9712 5.6251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -63.695341 kcal Electronic energy + Delta-G solvation = -22650.266202 eV Core-core repulsion = 19445.670049 eV Total energy + Delta-G solvation = -3204.596152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71967 -38.65369 -36.32547 -34.57566 -32.56575 -31.57247 -30.98327 -30.17442 -27.96799 -26.09087 -24.54085 -22.89640 -22.49214 -21.47782 -20.48018 -20.01369 -19.47239 -16.75500 -16.44674 -15.86053 -15.60665 -15.22232 -14.65826 -14.44015 -14.41817 -14.30041 -14.04498 -13.79086 -13.28861 -12.82808 -12.79910 -12.45414 -12.31582 -12.23093 -11.98429 -11.60984 -11.39830 -11.31724 -11.23887 -11.10027 -10.85556 -10.79129 -10.72205 -10.51803 -10.41045 -10.31217 -10.20873 -9.83488 -9.27027 -9.03375 -8.80371 -8.40009 -7.18335 -6.00639 -4.01762 3.12538 3.31979 3.39753 3.40659 3.45371 4.36459 4.44336 4.44728 4.47384 4.86885 4.95673 5.00627 5.04741 5.18467 5.21041 5.24793 5.32870 5.35456 5.37175 5.54380 5.65339 5.73470 5.78740 5.84682 5.87435 5.89395 5.90483 5.93715 6.00935 6.07954 6.12617 6.17977 6.22312 6.29353 6.49048 6.66501 6.78373 6.98657 7.23540 7.35092 7.73800 7.85385 8.14967 8.23599 8.56530 8.69050 9.06358 9.62420 11.09847 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.003566 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.126386 B = 7850.153550 C = 9094.019179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.519 5.519 4 C 0.190 3.810 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.046 3.954 14 C 0.513 3.487 15 O -0.523 6.523 16 N -0.741 5.741 17 C 0.126 3.874 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.014 0.986 28 H 0.070 0.930 29 H -0.011 1.011 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.833 -7.495 15.446 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 N -0.244 5.244 4 C 0.066 3.934 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.210 1.210 13 C -0.086 4.086 14 C 0.300 3.700 15 O -0.398 6.398 16 N -0.395 5.395 17 C 0.002 3.998 18 C -0.116 4.116 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.150 4.150 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.007 0.993 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.760 -7.424 16.076 22.425 hybrid contribution 0.880 0.748 -0.918 1.475 sum 14.640 -6.676 15.158 22.106 Atomic orbital electron populations 1.21674 0.95490 0.99695 1.02719 1.22065 0.96352 0.90242 0.99024 1.61845 1.13219 1.15418 1.33906 1.19844 0.96771 0.94270 0.82559 1.21222 1.46199 0.90679 0.96163 0.91912 1.24985 0.95485 0.98936 0.95220 1.69966 1.47891 1.35134 1.00928 0.86465 0.77601 0.85413 0.78089 1.19676 1.21171 1.21015 1.21862 0.93073 1.02949 0.90676 1.21104 0.82233 0.76688 0.90006 1.90638 1.37803 1.46708 1.64642 1.46092 1.09565 1.70589 1.13287 1.21294 0.95464 1.00200 0.82822 1.21403 0.95342 0.97246 0.97657 1.21620 0.95952 0.95870 1.01980 1.21537 0.96592 1.00916 0.96682 1.21548 1.00760 0.96262 0.97257 1.21515 0.96065 0.96784 1.01194 1.21505 0.96670 1.01100 0.95731 0.92367 0.93889 0.92224 0.96765 0.91202 0.99325 0.94089 0.93009 0.87317 0.93506 0.76880 0.91958 0.91758 0.90624 0.91610 0.91659 0.91991 0.92030 0.92008 0.92260 0.92050 0.92023 0.91608 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.99 37.16 0.37 -2.31 16 2 C 0.05 1.05 5.23 -3.82 -0.02 1.03 16 3 N -0.52 -11.80 4.12 -237.51 -0.98 -12.78 16 4 C 0.19 4.99 4.59 -4.98 -0.02 4.97 16 5 C -0.50 -14.20 8.61 -34.44 -0.30 -14.49 16 6 H 0.06 1.77 7.66 -52.49 -0.40 1.37 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.05 0.88 5.27 -4.98 -0.03 0.85 16 14 C 0.51 8.99 7.39 -10.99 -0.08 8.90 16 15 O -0.52 -11.00 14.48 5.56 0.08 -10.92 16 16 N -0.74 -9.51 5.28 -60.29 -0.32 -9.83 16 17 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 18 C -0.10 -0.81 2.23 -90.62 -0.20 -1.01 16 19 C -0.12 -0.97 5.08 -26.73 -0.14 -1.10 16 20 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 21 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 22 C -0.12 -0.78 5.92 -26.74 -0.16 -0.94 16 23 C -0.11 -0.84 5.20 -26.73 -0.14 -0.97 16 24 H 0.06 1.21 6.53 -51.93 -0.34 0.87 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 27 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 28 H 0.07 1.40 5.81 -51.93 -0.30 1.10 16 29 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 30 H 0.04 1.15 6.26 -51.93 -0.32 0.83 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.11 2.11 7.32 -51.93 -0.38 1.73 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.40 4.11 7.65 -40.82 -0.31 3.80 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.57 7.18 -51.93 -0.37 0.19 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -32.04 364.78 -9.89 -41.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.74 Total: -0.41 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.14 Total: -4.22 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.56 Total: -48.53 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.04 -9.89 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.765 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds