Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.46680 * 2 1 4 4 C 1.46898 * 111.00185 * 287.73021 * 3 2 1 5 5 C 1.50702 * 109.47466 * 160.36627 * 4 3 2 6 6 H 1.08002 * 119.99771 * 4.67462 * 5 4 3 7 7 C 1.37876 * 120.00358 * 184.67292 * 5 4 3 8 8 N 1.31516 * 119.99906 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00042 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47114 * 120.00071 * 9 7 5 12 12 H 1.48500 * 109.46942 * 240.00025 * 9 7 5 13 13 C 1.46898 * 110.99633 * 163.77817 * 3 2 1 14 14 C 1.50702 * 109.47309 * 293.94932 * 13 3 2 15 15 O 1.21280 * 119.99663 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00116 * 180.02562 * 14 13 3 17 17 C 1.46497 * 120.00148 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47293 * 179.97438 * 17 16 14 19 19 C 1.53000 * 109.46669 * 65.00018 * 18 17 16 20 20 C 1.53005 * 109.46669 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46991 * 299.99945 * 20 19 18 22 22 C 1.52989 * 109.47357 * 60.00133 * 21 20 19 23 23 C 1.53002 * 109.47449 * 300.00049 * 22 21 20 24 24 H 1.08995 * 109.47249 * 59.21682 * 1 2 3 25 25 H 1.09004 * 109.46973 * 179.21941 * 1 2 3 26 26 H 1.09007 * 109.46789 * 299.21346 * 1 2 3 27 27 H 1.09000 * 109.46683 * 240.00364 * 2 1 3 28 28 H 1.08995 * 109.47312 * 119.99978 * 2 1 3 29 29 H 1.09000 * 109.47387 * 280.37196 * 4 3 2 30 30 H 1.09005 * 109.47123 * 40.36730 * 4 3 2 31 31 H 0.96997 * 120.00040 * 180.02562 * 8 7 5 32 32 H 1.09007 * 109.47330 * 173.95357 * 13 3 2 33 33 H 1.09000 * 109.47229 * 53.95672 * 13 3 2 34 34 H 0.97006 * 120.00166 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.47150 * 59.99951 * 17 16 14 36 36 H 1.09000 * 109.47233 * 300.00156 * 17 16 14 37 37 H 1.08996 * 109.47318 * 304.99721 * 18 17 16 38 38 H 1.08993 * 109.47354 * 299.99421 * 19 18 17 39 39 H 1.09004 * 109.47107 * 60.00261 * 19 18 17 40 40 H 1.09001 * 109.46860 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.47318 * 59.99703 * 20 19 18 42 42 H 1.09005 * 109.46961 * 299.99957 * 21 20 19 43 43 H 1.08998 * 109.46931 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.47601 * 180.02562 * 22 21 20 45 45 H 1.09005 * 109.47229 * 59.99988 * 22 21 20 46 46 H 1.09005 * 109.46855 * 300.00168 * 23 22 21 47 47 H 1.08994 * 109.47593 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8013 2.0206 -1.3063 5 6 1.8520 3.5187 -1.1508 6 1 2.1032 3.9542 -0.1950 7 6 1.5776 4.3334 -2.2288 8 7 1.2712 3.8031 -3.3926 9 14 1.6411 6.1903 -2.0362 10 1 2.0077 6.5307 -0.6380 11 1 2.6568 6.7497 -2.9639 12 1 0.3099 6.7667 -2.3537 13 6 3.4366 1.4424 0.3831 14 6 3.5868 1.0091 1.8187 15 8 2.6097 0.6840 2.4593 16 7 4.8069 0.9829 2.3905 17 6 4.9530 0.5612 3.7858 18 6 6.4289 0.6211 4.1849 19 6 6.9083 2.0736 4.1487 20 6 8.3840 2.1336 4.5484 21 6 8.5522 1.5760 5.9633 22 6 8.0728 0.1237 5.9995 23 6 6.5971 0.0635 5.5998 24 1 -0.3633 0.5259 -0.8828 25 1 -0.3633 -1.0276 -0.0140 26 1 -0.3633 0.5016 0.8970 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.5785 1.7008 -2.0004 30 1 0.8253 1.7283 -1.6940 31 1 1.0785 4.3762 -4.1511 32 1 3.8021 2.4633 0.2717 33 1 4.0139 0.7777 -0.2594 34 1 5.5884 1.2433 1.8782 35 1 4.5882 -0.4599 3.8969 36 1 4.3752 1.2253 4.4286 37 1 7.0184 0.0264 3.4872 38 1 6.7881 2.4709 3.1409 39 1 6.3188 2.6683 4.8465 40 1 8.7257 3.1683 4.5222 41 1 8.9738 1.5388 3.8510 42 1 7.9624 2.1709 6.6607 43 1 9.6034 1.6192 6.2482 44 1 8.1922 -0.2734 7.0075 45 1 8.6626 -0.4712 5.3020 46 1 6.0073 0.6584 6.2972 47 1 6.2556 -0.9712 5.6251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -83.904736 kcal Electronic energy + Delta-G solvation = -22651.142547 eV Core-core repulsion = 19445.670049 eV Total energy + Delta-G solvation = -3205.472497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96275 -39.55354 -37.97907 -35.72188 -34.69891 -32.57017 -31.74141 -31.52606 -29.77827 -27.53463 -25.87599 -24.39769 -23.51460 -22.30855 -21.85840 -21.19529 -20.51951 -18.56845 -18.09360 -17.18007 -16.65580 -16.56155 -16.17707 -15.83710 -15.52103 -15.36339 -14.98343 -14.90155 -14.70900 -14.29222 -14.18497 -13.81825 -13.35867 -13.20784 -13.08480 -13.00823 -12.86820 -12.69657 -12.63119 -12.59103 -12.25749 -12.08642 -11.98193 -11.89673 -11.65039 -11.33085 -11.32340 -11.05153 -10.91326 -10.65703 -10.51390 -10.01223 -8.98092 -8.17698 -6.27502 1.41407 1.43382 1.56285 1.70870 2.18295 2.42530 3.13816 3.35929 3.67679 3.79942 3.84982 3.97066 4.23738 4.25584 4.31158 4.35559 4.40218 4.53985 4.55140 4.56302 4.59360 4.66209 4.71666 4.73560 4.80572 4.89071 4.91805 5.03147 5.05064 5.19639 5.24287 5.28190 5.28353 5.29356 5.31331 5.36191 5.41202 5.46016 5.53765 5.62934 5.68687 6.09496 6.30144 6.58260 6.67736 6.87495 7.34752 7.41945 8.92787 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.003566 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.126386 B = 7850.153550 C = 9094.019179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.053 3.947 3 N -0.536 5.536 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.933 5.933 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.275 1.275 12 H -0.281 1.281 13 C 0.044 3.956 14 C 0.518 3.482 15 O -0.562 6.562 16 N -0.719 5.719 17 C 0.127 3.873 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.112 4.112 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.020 0.980 28 H 0.077 0.923 29 H -0.029 1.029 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.518 -7.404 16.439 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 N -0.261 5.261 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.207 1.207 13 C -0.087 4.087 14 C 0.305 3.695 15 O -0.440 6.440 16 N -0.373 5.373 17 C 0.004 3.996 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.150 4.150 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.095 0.905 29 H -0.012 1.012 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.503 -7.340 17.086 24.210 hybrid contribution 0.389 0.670 -1.196 1.425 sum 15.892 -6.670 15.889 23.442 Atomic orbital electron populations 1.21632 0.94979 1.01372 1.01030 1.22103 0.96848 0.89060 0.99478 1.61746 1.15852 1.16876 1.31666 1.19478 0.94659 0.93851 0.83871 1.21462 1.46426 0.91845 0.96065 0.92420 1.25847 0.94845 1.03904 0.94761 1.70079 1.48507 1.37031 1.01737 0.85375 0.77785 0.79307 0.78385 1.19054 1.20014 1.20712 1.21878 0.91292 1.03213 0.92323 1.20754 0.83072 0.76530 0.89192 1.90624 1.39329 1.48866 1.65185 1.45897 1.08579 1.68828 1.14011 1.21407 0.97510 0.99471 0.81240 1.21334 0.93042 0.97614 0.98518 1.21620 0.96793 0.95539 1.01546 1.21521 0.95591 1.01229 0.97163 1.21557 1.01286 0.96233 0.96779 1.21502 0.95175 0.96793 1.01796 1.21508 0.97489 1.01137 0.94838 0.94441 0.90559 0.93354 0.96216 0.90461 1.01172 0.96711 0.92677 0.87983 0.91538 0.75136 0.92295 0.93128 0.89541 0.91965 0.92645 0.91884 0.91420 0.92436 0.91355 0.91265 0.91521 0.92094 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.99 71.98 0.72 -4.43 16 2 C 0.05 2.15 5.23 86.31 0.45 2.60 16 3 N -0.54 -24.69 4.12 -905.35 -3.73 -28.41 16 4 C 0.21 11.14 4.59 85.56 0.39 11.53 16 5 C -0.52 -29.67 8.61 25.60 0.22 -29.45 16 6 H 0.06 3.28 7.66 -2.91 -0.02 3.26 16 7 C 0.00 0.25 5.46 84.65 0.46 0.72 16 8 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 9 Si 0.97 44.42 29.54 68.60 2.03 46.45 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.04 1.67 5.27 85.56 0.45 2.12 16 14 C 0.52 17.84 7.39 87.66 0.65 18.49 16 15 O -0.56 -23.55 14.48 -3.03 -0.04 -23.59 16 16 N -0.72 -17.57 5.28 -463.06 -2.45 -20.01 16 17 C 0.13 2.73 5.06 86.38 0.44 3.17 16 18 C -0.09 -1.28 2.23 -10.79 -0.02 -1.30 16 19 C -0.12 -1.77 5.08 30.60 0.16 -1.61 16 20 C -0.12 -1.46 5.92 30.60 0.18 -1.28 16 21 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 22 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 23 C -0.11 -1.46 5.20 30.60 0.16 -1.31 16 24 H 0.04 1.58 6.53 -2.39 -0.02 1.57 16 25 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 26 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.02 0.77 8.05 -2.39 -0.02 0.76 16 28 H 0.08 3.05 5.81 -2.39 -0.01 3.04 16 29 H -0.03 -1.65 8.00 -2.39 -0.02 -1.67 16 30 H 0.01 0.87 6.26 -2.38 -0.01 0.85 16 31 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.10 3.97 7.32 -2.38 -0.02 3.95 16 33 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 34 H 0.41 7.76 7.65 -92.70 -0.71 7.05 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 0.97 7.18 -2.39 -0.02 0.95 16 39 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.85 364.78 0.92 -67.93 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.21 Total: 16.25 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.62 Total: -3.00 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -5.89 Total: -104.03 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.04 Total: -23.59 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.85 0.92 -67.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.975 kcal (2) G-P(sol) polarization free energy of solvation -68.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds