Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47229 * 2 1 4 4 C 1.46899 * 111.00027 * 200.07381 * 3 2 1 5 5 C 1.50698 * 109.47366 * 66.04275 * 4 3 2 6 6 H 1.07998 * 119.99774 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00320 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99866 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00315 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47537 * 59.99545 * 9 7 5 11 11 H 1.48505 * 109.47530 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46944 * 299.99556 * 9 7 5 13 13 C 1.46889 * 111.00414 * 76.11517 * 3 2 1 14 14 C 1.50706 * 109.47422 * 200.14471 * 13 3 2 15 15 O 1.21275 * 119.99804 * 356.23612 * 14 13 3 16 16 N 1.34774 * 120.00164 * 176.23506 * 14 13 3 17 17 C 1.46927 * 120.63077 * 0.02562 * 16 14 13 18 18 C 1.53192 * 108.77620 * 126.39074 * 17 16 14 19 19 H 1.08998 * 109.49624 * 294.68044 * 18 17 16 20 20 C 1.53004 * 109.49888 * 174.58670 * 18 17 16 21 21 C 1.53040 * 109.31182 * 54.63547 * 18 17 16 22 22 C 1.53038 * 109.53918 * 298.63298 * 21 18 17 23 23 H 1.08994 * 109.49838 * 301.41655 * 22 21 18 24 24 C 1.52992 * 109.50018 * 181.31545 * 22 21 18 25 25 C 1.46921 * 120.63208 * 180.02562 * 16 14 13 26 26 H 1.09004 * 109.46905 * 294.72478 * 1 2 3 27 27 H 1.09000 * 109.47045 * 54.72235 * 1 2 3 28 28 H 1.08997 * 109.46927 * 174.72451 * 1 2 3 29 29 H 1.08995 * 109.46952 * 239.99706 * 2 1 3 30 30 H 1.09000 * 109.47058 * 120.00115 * 2 1 3 31 31 H 1.09003 * 109.47481 * 186.04219 * 4 3 2 32 32 H 1.09005 * 109.46837 * 306.04141 * 4 3 2 33 33 H 0.97005 * 120.00147 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47013 * 80.14419 * 13 3 2 35 35 H 1.09004 * 109.47437 * 320.14495 * 13 3 2 36 36 H 1.09007 * 109.58975 * 6.60441 * 17 16 14 37 37 H 1.09004 * 109.59064 * 246.17924 * 17 16 14 38 38 H 1.08998 * 109.47121 * 300.16165 * 20 18 17 39 39 H 1.09005 * 109.47259 * 60.16108 * 20 18 17 40 40 H 1.08994 * 109.47246 * 180.15850 * 20 18 17 41 41 H 1.09000 * 109.45815 * 58.66068 * 21 18 17 42 42 H 1.09005 * 109.45763 * 178.62882 * 21 18 17 43 43 H 1.09005 * 109.47254 * 60.00171 * 24 22 21 44 44 H 1.08996 * 109.47804 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.47423 * 300.00764 * 24 22 21 46 46 H 1.08999 * 109.59116 * 113.82361 * 25 16 14 47 47 H 1.08998 * 109.58737 * 353.39354 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4096 1.4519 -0.4707 5 6 3.4684 1.0508 -1.9222 6 1 2.5636 0.7743 -2.4430 7 6 4.6771 1.0369 -2.5852 8 7 5.7789 1.3741 -1.9511 9 14 4.7498 0.5404 -4.3845 10 1 3.9107 1.4657 -5.1877 11 1 6.1550 0.6080 -4.8604 12 1 4.2416 -0.8467 -4.5362 13 6 1.8850 1.9910 1.3312 14 6 1.9143 3.4925 1.2050 15 8 2.1039 4.0064 0.1230 16 7 1.7299 4.2641 2.2945 17 6 1.4997 3.6562 3.6121 18 6 2.5160 4.2302 4.6043 19 1 3.5207 3.9219 4.3152 20 6 2.2066 3.7112 6.0100 21 6 2.4272 5.7580 4.5928 22 6 2.7687 6.2800 3.1954 23 1 3.7710 5.9525 2.9196 24 6 2.7116 7.8089 3.1933 25 6 1.7552 5.7292 2.1872 26 1 -0.3633 0.4299 0.9335 27 1 -0.3633 0.5935 -0.8390 28 1 -0.3633 -1.0233 -0.0945 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.7822 2.4702 -0.3599 32 1 4.0260 0.7733 0.1190 33 1 6.6293 1.3647 -2.4177 34 1 2.7093 1.6635 1.9647 35 1 0.9394 1.6823 1.7770 36 1 1.6264 2.5757 3.5433 37 1 0.4892 3.8868 3.9495 38 1 1.2012 4.0187 6.2977 39 1 2.2699 2.6230 6.0177 40 1 2.9282 4.1221 6.7160 41 1 1.4155 6.0649 4.8581 42 1 3.1324 6.1681 5.3158 43 1 3.4308 8.2003 3.9129 44 1 2.9544 8.1803 2.1978 45 1 1.7086 8.1355 3.4679 46 1 0.7656 6.1290 2.4084 47 1 2.0506 6.0166 1.1781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = -45.854135 kcal Electronic energy + Delta-G solvation = -23541.356837 eV Core-core repulsion = 20337.534337 eV Total energy + Delta-G solvation = -3203.822500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05273 -37.88014 -36.18597 -33.86132 -33.36237 -32.51247 -30.22182 -28.46048 -26.87186 -26.72756 -25.65788 -24.29897 -22.32492 -20.97057 -20.64941 -19.88416 -18.60995 -16.78407 -16.38062 -15.81069 -15.26422 -15.04359 -14.89415 -14.45472 -14.07794 -13.92786 -13.62376 -13.16493 -13.04838 -12.95721 -12.70420 -12.50081 -12.24513 -12.12501 -12.04632 -11.85958 -11.63298 -11.50684 -11.10960 -10.97406 -10.93195 -10.85729 -10.66177 -10.62417 -10.45040 -10.38003 -10.09670 -9.75120 -9.25029 -8.94474 -8.36138 -8.29115 -7.17903 -5.90631 -3.89913 3.18381 3.25315 3.41267 3.44813 3.48943 4.47179 4.52722 4.64040 4.67645 4.82065 4.92060 5.15537 5.20244 5.26017 5.34660 5.39472 5.45244 5.47394 5.54501 5.57421 5.58249 5.66041 5.72375 5.75587 5.79838 5.82428 5.92921 5.95348 6.01076 6.04644 6.08052 6.11199 6.18625 6.32180 6.34070 6.71982 6.77497 6.82056 7.39002 7.40735 7.70928 7.91489 8.23844 8.29856 8.62331 8.81640 9.15915 9.72279 11.20870 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018270 B = 0.004465 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.210040 B = 6269.923501 C = 7010.168944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.520 5.520 4 C 0.195 3.805 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.040 3.960 14 C 0.514 3.486 15 O -0.498 6.498 16 N -0.626 5.626 17 C 0.116 3.884 18 C -0.111 4.111 19 H 0.076 0.924 20 C -0.144 4.144 21 C -0.106 4.106 22 C -0.109 4.109 23 H 0.075 0.925 24 C -0.143 4.143 25 C 0.119 3.881 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.018 0.982 31 H 0.041 0.959 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 6.344 17.242 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.070 3.930 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.092 4.092 14 C 0.302 3.698 15 O -0.370 6.370 16 N -0.363 5.363 17 C -0.008 4.008 18 C -0.130 4.130 19 H 0.095 0.905 20 C -0.202 4.202 21 C -0.144 4.144 22 C -0.129 4.129 23 H 0.093 0.907 24 C -0.201 4.201 25 C -0.003 4.003 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.070 6.889 16.223 19.822 hybrid contribution 0.719 -0.661 -0.205 0.998 sum -8.351 6.228 16.018 19.108 Atomic orbital electron populations 1.21809 0.96631 1.00366 1.01340 1.22011 0.94223 0.89847 1.01156 1.61864 1.26702 1.16513 1.19403 1.19791 0.80596 0.97325 0.95260 1.21077 0.93170 1.44116 0.95357 0.91989 1.24959 0.95640 0.95785 0.98246 1.69959 0.98381 1.49140 1.36627 0.86578 0.76745 0.78924 0.85238 1.20190 1.21457 1.20363 1.21917 1.01319 0.91747 0.94229 1.20860 0.75936 0.89659 0.83371 1.90740 1.45469 1.74608 1.26171 1.48175 1.74085 1.06189 1.07845 1.21712 0.98204 0.98238 0.82617 1.21546 1.00314 0.95938 0.95237 0.90544 1.21762 1.01608 1.01178 0.95639 1.21627 1.01655 0.94589 0.96493 1.21525 1.00337 0.95605 0.95399 0.90659 1.21746 1.01680 0.94597 1.02100 1.21524 0.98147 0.79855 1.00824 0.94111 0.91996 0.93274 0.89191 0.96367 0.94116 0.99718 0.93065 0.92970 0.89647 0.89850 0.91778 0.92576 0.92369 0.92441 0.91909 0.91874 0.92540 0.92292 0.92674 0.92229 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.96 37.16 0.37 -1.91 16 2 C 0.06 1.09 5.51 -3.82 -0.02 1.07 16 3 N -0.52 -11.81 4.00 -237.52 -0.95 -12.76 16 4 C 0.19 5.39 4.33 -4.98 -0.02 5.37 16 5 C -0.50 -14.77 8.23 -34.44 -0.28 -15.06 16 6 H 0.06 1.82 7.32 -52.49 -0.38 1.43 16 7 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -28.01 13.29 55.43 0.74 -27.28 16 9 Si 0.90 22.65 29.54 -169.99 -5.02 17.63 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.04 0.73 3.65 -4.98 -0.02 0.71 16 14 C 0.51 10.02 7.43 -10.98 -0.08 9.94 16 15 O -0.50 -12.25 14.50 5.56 0.08 -12.17 16 16 N -0.63 -9.27 2.97 -172.76 -0.51 -9.78 16 17 C 0.12 1.26 5.60 -3.71 -0.02 1.24 16 18 C -0.11 -1.07 2.87 -90.50 -0.26 -1.33 16 19 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 20 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 21 C -0.11 -0.97 4.45 -26.69 -0.12 -1.09 16 22 C -0.11 -1.21 2.87 -90.50 -0.26 -1.47 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 C -0.14 -1.31 9.20 37.15 0.34 -0.96 16 25 C 0.12 1.60 5.72 -3.71 -0.02 1.58 16 26 H 0.04 0.57 6.92 -51.93 -0.36 0.22 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.96 6.58 -51.93 -0.34 1.62 16 30 H 0.02 0.33 7.99 -51.93 -0.42 -0.09 16 31 H 0.04 1.26 6.63 -51.93 -0.34 0.91 16 32 H -0.01 -0.43 8.12 -51.93 -0.42 -0.85 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.05 0.93 7.71 -51.93 -0.40 0.53 16 35 H 0.09 1.30 6.20 -51.93 -0.32 0.98 16 36 H 0.08 0.88 5.95 -51.92 -0.31 0.57 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -34.28 362.81 -9.07 -43.35 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -8.71 Total: -3.35 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.15 Total: -1.10 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.73 Total: -49.82 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.28 -9.07 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.507 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds