Wall clock time and date at job start Tue Mar 31 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46894 * 109.47500 * 2 1 4 4 C 1.46906 * 111.00204 * 199.76832 * 3 2 1 5 5 C 1.50708 * 109.46854 * 66.04931 * 4 3 2 6 6 H 1.07994 * 120.00135 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99537 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99615 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47510 * 90.00176 * 9 7 5 11 11 H 1.48503 * 109.46702 * 209.99692 * 9 7 5 12 12 H 1.48498 * 109.47085 * 329.99563 * 9 7 5 13 13 C 1.46898 * 111.00135 * 75.81724 * 3 2 1 14 14 C 1.50701 * 109.47171 * 200.05668 * 13 3 2 15 15 O 1.21279 * 119.99982 * 5.51268 * 14 13 3 16 16 N 1.34783 * 119.99841 * 185.51568 * 14 13 3 17 17 C 1.46925 * 120.62928 * 359.71450 * 16 14 13 18 18 C 1.53624 * 108.53920 * 126.37034 * 17 16 14 19 19 H 1.08998 * 109.43116 * 174.72032 * 18 17 16 20 20 C 1.52996 * 109.63734 * 294.86650 * 18 17 16 21 21 C 1.53040 * 109.24233 * 54.85725 * 18 17 16 22 22 C 1.53043 * 109.53989 * 298.51119 * 21 18 17 23 23 H 1.09002 * 109.51799 * 301.39577 * 22 21 18 24 24 C 1.53001 * 109.49851 * 181.31348 * 22 21 18 25 25 C 1.46926 * 120.63028 * 179.97438 * 16 14 13 26 26 H 1.09001 * 109.47001 * 294.59057 * 1 2 3 27 27 H 1.09003 * 109.47110 * 54.58317 * 1 2 3 28 28 H 1.09000 * 109.47739 * 174.58793 * 1 2 3 29 29 H 1.09002 * 109.46931 * 239.99643 * 2 1 3 30 30 H 1.09002 * 109.47482 * 120.00436 * 2 1 3 31 31 H 1.09006 * 109.46972 * 186.04293 * 4 3 2 32 32 H 1.08990 * 109.47059 * 306.04721 * 4 3 2 33 33 H 0.97000 * 120.00100 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46732 * 320.05281 * 13 3 2 35 35 H 1.08998 * 109.47318 * 80.05784 * 13 3 2 36 36 H 1.08992 * 109.58732 * 246.20313 * 17 16 14 37 37 H 1.08994 * 109.58765 * 6.62985 * 17 16 14 38 38 H 1.08997 * 109.47213 * 179.83339 * 20 18 17 39 39 H 1.09005 * 109.46852 * 299.83461 * 20 18 17 40 40 H 1.09000 * 109.46966 * 59.83658 * 20 18 17 41 41 H 1.08999 * 109.46394 * 178.48857 * 21 18 17 42 42 H 1.09005 * 109.44965 * 58.52295 * 21 18 17 43 43 H 1.08997 * 109.47422 * 300.15992 * 24 22 21 44 44 H 1.09006 * 109.46881 * 60.16272 * 24 22 21 45 45 H 1.08998 * 109.46614 * 180.15908 * 24 22 21 46 46 H 1.09000 * 109.58544 * 353.37295 * 25 16 14 47 47 H 1.09001 * 109.58605 * 113.65276 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4120 1.4510 -0.4639 5 6 3.4779 1.0475 -1.9144 6 1 2.5758 0.7693 -2.4390 7 6 4.6900 1.0324 -2.5713 8 7 4.7476 0.6798 -3.8370 9 14 6.2505 1.5114 -1.6633 10 1 6.8531 0.3040 -1.0434 11 1 7.2156 2.1107 -2.6198 12 1 5.9236 2.5005 -0.6049 13 6 1.8784 1.9933 1.3296 14 6 1.9106 3.4944 1.2011 15 8 1.9378 4.0087 0.1031 16 7 1.9092 4.2656 2.3066 17 6 1.8702 3.6574 3.6435 18 6 3.0420 4.2127 4.4672 19 1 2.9731 3.8435 5.4904 20 6 4.3658 3.7599 3.8481 21 6 2.9763 5.7417 4.4705 22 6 3.1058 6.2627 3.0373 23 1 4.0484 5.9212 2.6094 24 6 3.0728 7.7924 3.0450 25 6 1.9409 5.7304 2.1975 26 1 -0.3633 0.4276 0.9345 27 1 -0.3633 0.5956 -0.8375 28 1 -0.3634 -1.0230 -0.0969 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7840 2.4696 -0.3529 32 1 4.0253 0.7734 0.1300 33 1 5.6002 0.6695 -4.2993 34 1 0.9299 1.6866 1.7705 35 1 2.6987 1.6656 1.9681 36 1 0.9274 3.9059 4.1306 37 1 1.9642 2.5751 3.5554 38 1 5.1952 4.1578 4.4327 39 1 4.4122 2.6709 3.8460 40 1 4.4331 4.1285 2.8245 41 1 3.7907 6.1390 5.0762 42 1 2.0224 6.0631 4.8888 43 1 2.1306 8.1333 3.4740 44 1 3.9022 8.1706 3.6427 45 1 3.1622 8.1628 2.0238 46 1 2.0816 6.0162 1.1551 47 1 1.0027 6.1447 2.5666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:27 Heat of formation + Delta-G solvation = -37.750806 kcal Electronic energy + Delta-G solvation = -23989.256963 eV Core-core repulsion = 20785.785850 eV Total energy + Delta-G solvation = -3203.471113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27989 -38.03501 -36.34104 -33.85623 -33.03958 -32.47045 -30.37252 -28.86613 -27.10419 -26.86432 -25.88146 -24.41223 -22.08243 -21.76201 -20.46817 -19.51690 -18.35182 -16.97261 -16.76317 -15.78712 -15.49525 -15.14177 -14.79531 -14.32130 -14.19797 -14.12967 -13.64992 -13.59023 -13.27111 -12.97247 -12.87964 -12.44693 -12.25383 -12.14744 -12.12338 -11.80693 -11.73504 -11.59166 -11.21395 -11.18414 -11.12307 -10.88666 -10.71149 -10.65186 -10.41783 -10.29643 -9.99709 -9.76086 -9.35597 -9.05856 -8.49252 -8.41122 -7.34595 -5.96398 -3.91665 3.07662 3.16108 3.32176 3.40214 3.44210 4.43155 4.49723 4.56915 4.65223 4.72337 4.82060 4.99646 5.08074 5.23298 5.36069 5.36618 5.38833 5.44996 5.48196 5.50914 5.56801 5.58039 5.64710 5.71949 5.75637 5.80372 5.90251 5.92462 5.95670 5.99139 6.06412 6.10083 6.14574 6.27043 6.33634 6.65782 6.71098 6.74209 6.93500 7.05615 7.56845 7.74053 7.94453 8.08823 8.66516 8.76396 9.12964 9.65850 11.17099 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.005597 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.881192 B = 5001.728141 C = 5822.635667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.509 5.509 4 C 0.165 3.835 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.037 3.963 14 C 0.513 3.487 15 O -0.500 6.500 16 N -0.623 5.623 17 C 0.113 3.887 18 C -0.107 4.107 19 H 0.079 0.921 20 C -0.150 4.150 21 C -0.107 4.107 22 C -0.111 4.111 23 H 0.078 0.922 24 C -0.144 4.144 25 C 0.119 3.881 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.019 0.981 31 H 0.033 0.967 32 H -0.021 1.021 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 7.922 20.981 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.233 5.233 4 C 0.039 3.961 5 C -0.538 4.538 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.095 4.095 14 C 0.300 3.700 15 O -0.371 6.371 16 N -0.360 5.360 17 C -0.011 4.011 18 C -0.126 4.126 19 H 0.097 0.903 20 C -0.207 4.207 21 C -0.144 4.144 22 C -0.131 4.131 23 H 0.097 0.903 24 C -0.202 4.202 25 C -0.004 4.004 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.051 0.949 32 H -0.003 1.003 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.409 8.422 19.836 22.218 hybrid contribution 1.486 -0.183 1.139 1.881 sum -3.923 8.239 20.975 22.874 Atomic orbital electron populations 1.21791 0.96302 1.00615 1.01400 1.22052 0.94589 0.89200 1.01423 1.61665 1.24678 1.17129 1.19864 1.20214 0.82971 0.96219 0.96663 1.20990 0.95321 1.44082 0.93365 0.90047 1.24857 0.98600 0.95083 0.94745 1.69892 1.25651 1.49062 1.09544 0.86899 0.83905 0.79081 0.80105 1.20467 1.21152 1.19314 1.21988 1.01682 0.91891 0.93947 1.20836 0.75893 0.89613 0.83625 1.90742 1.46325 1.74547 1.25505 1.48141 1.75723 1.06240 1.05886 1.21813 0.97771 0.98373 0.83095 1.21576 0.95666 0.96073 0.99321 0.90273 1.21872 0.96096 1.01123 1.01657 1.21590 1.01834 0.94649 0.96354 1.21562 0.99908 0.95596 0.95984 0.90346 1.21755 1.01685 0.94636 1.02102 1.21522 0.97193 0.79806 1.01844 0.94154 0.91766 0.93074 0.88653 0.96295 0.94889 1.00349 0.92800 0.89075 0.93138 0.91607 0.89773 0.92743 0.92707 0.91921 0.91866 0.91887 0.92654 0.92552 0.92326 0.89043 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.95 37.15 0.37 -1.90 16 2 C 0.06 1.06 5.51 -3.83 -0.02 1.04 16 3 N -0.51 -11.14 3.95 -237.52 -0.94 -12.08 16 4 C 0.17 4.24 3.43 -4.97 -0.02 4.23 16 5 C -0.50 -14.85 8.79 -34.44 -0.30 -15.16 16 6 H 0.08 2.62 7.56 -52.49 -0.40 2.23 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -28.56 13.96 55.43 0.77 -27.78 16 9 Si 0.87 22.53 27.47 -169.99 -4.67 17.86 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 13 C 0.04 0.64 3.71 -4.98 -0.02 0.62 16 14 C 0.51 9.43 7.26 -10.98 -0.08 9.35 16 15 O -0.50 -11.71 14.95 5.56 0.08 -11.63 16 16 N -0.62 -8.61 2.40 -172.54 -0.41 -9.02 16 17 C 0.11 1.14 5.78 -3.49 -0.02 1.12 16 18 C -0.11 -0.96 3.21 -90.28 -0.29 -1.25 16 19 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 20 C -0.15 -1.64 8.71 37.16 0.32 -1.31 16 21 C -0.11 -0.91 4.71 -26.69 -0.13 -1.04 16 22 C -0.11 -1.16 2.53 -90.52 -0.23 -1.39 16 23 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 24 C -0.14 -1.25 9.20 37.16 0.34 -0.90 16 25 C 0.12 1.50 5.71 -3.74 -0.02 1.48 16 26 H 0.04 0.56 6.90 -51.93 -0.36 0.20 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.09 6.58 -51.93 -0.34 1.75 16 30 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 31 H 0.03 0.91 5.98 -51.93 -0.31 0.60 16 32 H -0.02 -0.53 7.55 -51.93 -0.39 -0.92 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.09 1.32 6.54 -51.93 -0.34 0.98 16 35 H 0.05 0.81 7.27 -51.93 -0.38 0.43 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.82 5.89 -51.93 -0.31 0.51 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.86 5.97 -51.93 -0.31 0.55 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.39 7.01 -51.93 -0.36 1.03 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 355.03 15.07 5.35 5.35 Total: -1.00 -34.50 355.03 -8.48 -42.98 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.48 Total: -2.52 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -0.19 Total: -3.17 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.58 Total: -48.88 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.50 -8.48 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.232 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds