Wall clock time and date at job start Tue Mar 31 2020 05:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46894 * 109.47500 * 2 1 4 4 C 1.46906 * 111.00204 * 199.76832 * 3 2 1 5 5 C 1.50708 * 109.46854 * 66.04931 * 4 3 2 6 6 H 1.07994 * 120.00135 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99537 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99615 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00257 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47510 * 90.00176 * 9 7 5 11 11 H 1.48503 * 109.46702 * 209.99692 * 9 7 5 12 12 H 1.48498 * 109.47085 * 329.99563 * 9 7 5 13 13 C 1.46898 * 111.00135 * 75.81724 * 3 2 1 14 14 C 1.50701 * 109.47171 * 200.05668 * 13 3 2 15 15 O 1.21279 * 119.99982 * 5.51268 * 14 13 3 16 16 N 1.34783 * 119.99841 * 185.51568 * 14 13 3 17 17 C 1.46925 * 120.62928 * 359.71450 * 16 14 13 18 18 C 1.53624 * 108.53920 * 126.37034 * 17 16 14 19 19 H 1.08998 * 109.43116 * 174.72032 * 18 17 16 20 20 C 1.52996 * 109.63734 * 294.86650 * 18 17 16 21 21 C 1.53040 * 109.24233 * 54.85725 * 18 17 16 22 22 C 1.53043 * 109.53989 * 298.51119 * 21 18 17 23 23 H 1.09002 * 109.51799 * 301.39577 * 22 21 18 24 24 C 1.53001 * 109.49851 * 181.31348 * 22 21 18 25 25 C 1.46926 * 120.63028 * 179.97438 * 16 14 13 26 26 H 1.09001 * 109.47001 * 294.59057 * 1 2 3 27 27 H 1.09003 * 109.47110 * 54.58317 * 1 2 3 28 28 H 1.09000 * 109.47739 * 174.58793 * 1 2 3 29 29 H 1.09002 * 109.46931 * 239.99643 * 2 1 3 30 30 H 1.09002 * 109.47482 * 120.00436 * 2 1 3 31 31 H 1.09006 * 109.46972 * 186.04293 * 4 3 2 32 32 H 1.08990 * 109.47059 * 306.04721 * 4 3 2 33 33 H 0.97000 * 120.00100 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46732 * 320.05281 * 13 3 2 35 35 H 1.08998 * 109.47318 * 80.05784 * 13 3 2 36 36 H 1.08992 * 109.58732 * 246.20313 * 17 16 14 37 37 H 1.08994 * 109.58765 * 6.62985 * 17 16 14 38 38 H 1.08997 * 109.47213 * 179.83339 * 20 18 17 39 39 H 1.09005 * 109.46852 * 299.83461 * 20 18 17 40 40 H 1.09000 * 109.46966 * 59.83658 * 20 18 17 41 41 H 1.08999 * 109.46394 * 178.48857 * 21 18 17 42 42 H 1.09005 * 109.44965 * 58.52295 * 21 18 17 43 43 H 1.08997 * 109.47422 * 300.15992 * 24 22 21 44 44 H 1.09006 * 109.46881 * 60.16272 * 24 22 21 45 45 H 1.08998 * 109.46614 * 180.15908 * 24 22 21 46 46 H 1.09000 * 109.58544 * 353.37295 * 25 16 14 47 47 H 1.09001 * 109.58605 * 113.65276 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4120 1.4510 -0.4639 5 6 3.4779 1.0475 -1.9144 6 1 2.5758 0.7693 -2.4390 7 6 4.6900 1.0324 -2.5713 8 7 4.7476 0.6798 -3.8370 9 14 6.2505 1.5114 -1.6633 10 1 6.8531 0.3040 -1.0434 11 1 7.2156 2.1107 -2.6198 12 1 5.9236 2.5005 -0.6049 13 6 1.8784 1.9933 1.3296 14 6 1.9106 3.4944 1.2011 15 8 1.9378 4.0087 0.1031 16 7 1.9092 4.2656 2.3066 17 6 1.8702 3.6574 3.6435 18 6 3.0420 4.2127 4.4672 19 1 2.9731 3.8435 5.4904 20 6 4.3658 3.7599 3.8481 21 6 2.9763 5.7417 4.4705 22 6 3.1058 6.2627 3.0373 23 1 4.0484 5.9212 2.6094 24 6 3.0728 7.7924 3.0450 25 6 1.9409 5.7304 2.1975 26 1 -0.3633 0.4276 0.9345 27 1 -0.3633 0.5956 -0.8375 28 1 -0.3634 -1.0230 -0.0969 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7840 2.4696 -0.3529 32 1 4.0253 0.7734 0.1300 33 1 5.6002 0.6695 -4.2993 34 1 0.9299 1.6866 1.7705 35 1 2.6987 1.6656 1.9681 36 1 0.9274 3.9059 4.1306 37 1 1.9642 2.5751 3.5554 38 1 5.1952 4.1578 4.4327 39 1 4.4122 2.6709 3.8460 40 1 4.4331 4.1285 2.8245 41 1 3.7907 6.1390 5.0762 42 1 2.0224 6.0631 4.8888 43 1 2.1306 8.1333 3.4740 44 1 3.9022 8.1706 3.6427 45 1 3.1622 8.1628 2.0238 46 1 2.0816 6.0162 1.1551 47 1 1.0027 6.1447 2.5666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:26 Heat of formation + Delta-G solvation = -61.218613 kcal Electronic energy + Delta-G solvation = -23990.274603 eV Core-core repulsion = 20785.785850 eV Total energy + Delta-G solvation = -3204.488753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41843 -39.27823 -37.91906 -34.90364 -34.66965 -33.96967 -31.90809 -30.58899 -28.14310 -27.83038 -27.06820 -25.66726 -23.96611 -22.60573 -21.97439 -20.72186 -19.43378 -18.94538 -18.20205 -17.11451 -16.88370 -16.31681 -16.03758 -15.73404 -15.61986 -15.13896 -14.96354 -14.93048 -14.57422 -14.39772 -14.20096 -14.05604 -13.69807 -13.30873 -13.00440 -12.93509 -12.88755 -12.71205 -12.62768 -12.57200 -12.44312 -12.13528 -11.96802 -11.89209 -11.75559 -11.61961 -11.46650 -11.42136 -11.09148 -10.80846 -10.64171 -9.52262 -8.99400 -8.30730 -6.31809 1.24566 1.29636 1.39911 1.72608 2.01769 2.30198 3.01740 3.20747 3.59660 3.77117 3.86973 3.94877 4.01438 4.15856 4.23365 4.26359 4.35030 4.45989 4.47521 4.49003 4.60403 4.67132 4.70152 4.75128 4.82103 4.82630 4.88030 4.91303 4.91559 5.05081 5.06437 5.08834 5.16016 5.26908 5.27741 5.31056 5.37115 5.43577 5.51963 5.55665 5.68044 5.95173 6.34125 6.46442 6.64976 6.72711 7.30061 7.36287 8.86492 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015754 B = 0.005597 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.881192 B = 5001.728141 C = 5822.635667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 N -0.536 5.536 4 C 0.184 3.816 5 C -0.508 4.508 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.947 5.947 9 Si 0.944 3.056 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.265 1.265 13 C 0.040 3.960 14 C 0.505 3.495 15 O -0.569 6.569 16 N -0.612 5.612 17 C 0.103 3.897 18 C -0.102 4.102 19 H 0.112 0.888 20 C -0.151 4.151 21 C -0.102 4.102 22 C -0.107 4.107 23 H 0.051 0.949 24 C -0.140 4.140 25 C 0.116 3.884 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.011 0.989 32 H -0.012 1.012 33 H 0.267 0.733 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 8.128 25.705 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 N -0.261 5.261 4 C 0.057 3.943 5 C -0.547 4.547 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.767 3.233 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.190 1.190 13 C -0.091 4.091 14 C 0.294 3.706 15 O -0.446 6.446 16 N -0.347 5.347 17 C -0.019 4.019 18 C -0.120 4.120 19 H 0.130 0.870 20 C -0.209 4.209 21 C -0.139 4.139 22 C -0.126 4.126 23 H 0.069 0.931 24 C -0.198 4.198 25 C -0.007 4.007 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.006 0.994 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.614 8.623 24.638 26.700 hybrid contribution 1.450 -0.234 -0.323 1.504 sum -4.164 8.388 24.314 26.056 Atomic orbital electron populations 1.21709 0.93564 1.01999 1.01784 1.22057 0.96777 0.87700 1.00723 1.61465 1.22186 1.19095 1.23357 1.19808 0.85758 0.94574 0.94208 1.21224 0.93947 1.43860 0.95633 0.94479 1.25789 1.02518 0.94967 0.95616 1.70044 1.26901 1.50484 1.11396 0.85769 0.79108 0.79515 0.78866 1.18028 1.20485 1.18958 1.22085 1.04229 0.90975 0.91812 1.21129 0.75331 0.90399 0.83765 1.90716 1.50005 1.75620 1.28270 1.48191 1.73435 1.06590 1.06464 1.22221 0.99868 0.98799 0.81003 1.21606 0.93672 0.96341 1.00428 0.86969 1.21879 0.98080 1.00981 0.99912 1.21591 1.03460 0.94285 0.94578 1.21505 0.97383 0.96723 0.97027 0.93093 1.21732 1.03097 0.93259 1.01702 1.21630 0.99356 0.79355 1.00343 0.91274 0.94377 0.90603 0.92741 0.93467 0.97091 0.99405 0.92451 0.85412 0.91150 0.88567 0.89014 0.91655 0.92836 0.95518 0.90574 0.89868 0.90983 0.91325 0.93732 0.92908 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.95 71.98 0.72 -3.30 16 2 C 0.05 2.08 5.51 86.30 0.48 2.55 16 3 N -0.54 -23.71 3.95 -905.37 -3.58 -27.28 16 4 C 0.18 9.65 3.43 85.56 0.29 9.95 16 5 C -0.51 -31.79 8.79 25.60 0.22 -31.56 16 6 H 0.04 2.57 7.56 -2.91 -0.02 2.55 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -62.33 13.96 21.45 0.30 -62.04 16 9 Si 0.94 47.49 27.47 68.60 1.88 49.37 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.26 -13.10 6.54 99.48 0.65 -12.44 16 13 C 0.04 1.32 3.71 85.56 0.32 1.64 16 14 C 0.51 18.61 7.26 87.66 0.64 19.25 16 15 O -0.57 -28.08 14.95 -3.03 -0.05 -28.13 16 16 N -0.61 -16.09 2.40 -818.17 -1.96 -18.05 16 17 C 0.10 1.66 5.78 86.51 0.50 2.16 16 18 C -0.10 -1.40 3.21 -10.57 -0.03 -1.43 16 19 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 20 C -0.15 -2.95 8.71 71.98 0.63 -2.32 16 21 C -0.10 -1.34 4.71 30.62 0.14 -1.19 16 22 C -0.11 -2.08 2.53 -10.73 -0.03 -2.11 16 23 H 0.05 1.28 6.34 -2.39 -0.02 1.26 16 24 C -0.14 -2.20 9.20 71.98 0.66 -1.53 16 25 C 0.12 2.85 5.71 86.35 0.49 3.34 16 26 H 0.07 1.68 6.90 -2.39 -0.02 1.66 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.05 2.49 6.58 -2.39 -0.02 2.47 16 30 H 0.05 1.51 8.00 -2.39 -0.02 1.49 16 31 H 0.01 0.63 5.98 -2.38 -0.01 0.61 16 32 H -0.01 -0.58 7.55 -2.39 -0.02 -0.59 16 33 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 34 H 0.13 3.22 6.54 -2.39 -0.02 3.21 16 35 H 0.07 2.07 7.27 -2.39 -0.02 2.05 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.37 5.89 -2.39 -0.01 1.35 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.03 0.71 5.97 -2.39 -0.01 0.69 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 1.72 7.01 -2.39 -0.02 1.70 16 47 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -82.15 355.03 2.95 -79.20 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.86 Total: 10.53 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.49 Total: -3.60 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -5.24 Total: -107.37 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.05 Total: -28.13 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.88 Total: 49.37 kcal Total: -82.15 2.95 -79.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.978 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds