Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 C 1.52997 * 109.47141 * 119.99983 * 2 1 3 5 5 C 1.52998 * 109.47176 * 65.00229 * 4 2 1 6 6 N 1.46903 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00048 * 66.04015 * 6 5 4 8 8 C 1.50697 * 109.47312 * 199.56074 * 7 6 5 9 9 H 1.08003 * 120.00215 * 356.89451 * 8 7 6 10 10 C 1.37872 * 120.00159 * 176.89538 * 8 7 6 11 11 N 1.31517 * 120.00464 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00036 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47385 * 90.00079 * 12 10 8 14 14 H 1.48507 * 109.47019 * 209.99786 * 12 10 8 15 15 H 1.48503 * 109.46990 * 329.99652 * 12 10 8 16 16 C 1.46893 * 111.00135 * 189.99942 * 6 5 4 17 17 C 1.52997 * 109.47683 * 75.90866 * 16 6 5 18 18 C 1.52992 * 109.47505 * 174.00917 * 17 16 6 19 19 H 1.09003 * 110.36871 * 309.76878 * 18 17 16 20 20 C 1.54384 * 110.41401 * 187.42573 * 18 17 16 21 21 C 1.54258 * 105.06007 * 217.36793 * 20 18 17 22 22 C 1.54376 * 105.06113 * 359.97438 * 21 20 18 23 23 N 1.48555 * 110.41259 * 72.24768 * 18 17 16 24 24 C 1.46900 * 111.00465 * 277.82039 * 23 18 17 25 25 H 1.09002 * 109.47508 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46929 * 299.99860 * 1 2 3 28 28 H 1.09007 * 109.46929 * 240.00139 * 2 1 3 29 29 H 1.09003 * 109.46907 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47159 * 299.99798 * 3 2 1 31 31 H 1.08994 * 109.47421 * 60.00251 * 3 2 1 32 32 H 1.08998 * 109.47110 * 304.99661 * 4 2 1 33 33 H 1.09008 * 109.46771 * 184.99797 * 4 2 1 34 34 H 1.08998 * 109.47564 * 59.99711 * 5 4 2 35 35 H 1.08998 * 109.46932 * 299.99679 * 5 4 2 36 36 H 1.09001 * 109.47390 * 319.56119 * 7 6 5 37 37 H 1.09002 * 109.46906 * 79.55912 * 7 6 5 38 38 H 0.96997 * 120.00734 * 180.02562 * 11 10 8 39 39 H 1.09009 * 109.46907 * 195.91376 * 16 6 5 40 40 H 1.09004 * 109.47466 * 315.90758 * 16 6 5 41 41 H 1.09000 * 109.47139 * 294.01311 * 17 16 6 42 42 H 1.09006 * 109.46646 * 54.00961 * 17 16 6 43 43 H 1.09008 * 110.31967 * 336.26201 * 20 18 17 44 44 H 1.08997 * 110.32409 * 98.36571 * 20 18 17 45 45 H 1.09003 * 110.32075 * 118.89055 * 21 20 18 46 46 H 1.08998 * 110.32568 * 241.10127 * 21 20 18 47 47 H 1.08999 * 110.41700 * 142.63387 * 22 21 20 48 48 H 1.09010 * 110.41135 * 264.95738 * 22 21 20 49 49 H 1.08994 * 109.46802 * 77.35063 * 24 23 18 50 50 H 1.08992 * 109.47183 * 197.35954 * 24 23 18 51 51 H 1.09007 * 109.46862 * 317.35367 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1255 -2.8881 2.3871 7 6 1.4525 -2.3908 3.5944 8 6 2.2745 -2.7405 4.8080 9 1 3.1782 -3.3219 4.6989 10 6 1.8731 -2.3185 6.0576 11 7 2.5902 -2.6242 7.1169 12 14 0.3097 -1.3137 6.2465 13 1 -0.8427 -2.2261 6.4576 14 1 0.4428 -0.4061 7.4144 15 1 0.0864 -0.5100 5.0179 16 6 1.9663 -4.3426 2.2569 17 6 3.0447 -4.8920 1.3210 18 6 2.9734 -6.4202 1.3022 19 1 2.9616 -6.8120 2.3193 20 6 4.1650 -7.0052 0.5139 21 6 3.5879 -8.2197 -0.2421 22 6 2.0964 -8.2668 0.1536 23 7 1.7718 -6.8736 0.5557 24 6 0.5768 -6.8372 1.4092 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 2.0698 -2.6550 0.3002 35 1 0.5490 -2.2724 1.1421 36 1 1.3429 -1.3082 3.5295 37 1 0.4680 -2.8512 3.6774 38 1 2.3076 -2.3276 7.9961 39 1 2.0647 -4.8081 3.2377 40 1 0.9813 -4.5651 1.8465 41 1 2.8818 -4.5082 0.3139 42 1 4.0269 -4.5785 1.6748 43 1 4.5506 -6.2687 -0.1912 44 1 4.9523 -7.3221 1.1977 45 1 3.6902 -8.0793 -1.3182 46 1 4.0912 -9.1345 0.0708 47 1 1.4864 -8.5682 -0.6980 48 1 1.9461 -8.9509 0.9889 49 1 0.2289 -5.8086 1.5034 50 1 -0.2081 -7.4468 0.9617 51 1 0.8231 -7.2292 2.3961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089614791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = -9.573647 kcal Electronic energy + Delta-G solvation = -23643.369186 eV Core-core repulsion = 20576.953021 eV Total energy + Delta-G solvation = -3066.416165 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.21653 -37.59667 -35.48100 -32.64005 -32.15229 -31.70595 -29.03545 -27.86290 -27.01730 -25.84861 -25.37545 -22.64463 -22.02085 -20.91119 -19.98772 -19.82547 -19.31933 -16.84416 -16.08446 -15.44343 -15.07237 -15.06383 -14.57254 -14.48629 -13.97258 -13.75485 -13.40190 -13.07574 -13.03195 -12.63380 -12.55291 -12.31235 -12.22717 -12.07835 -11.98959 -11.77344 -11.48450 -11.39679 -11.17472 -11.10337 -10.95358 -10.74932 -10.66808 -10.46702 -10.41837 -10.29695 -10.21176 -9.94706 -9.76219 -9.57213 -9.20455 -8.52954 -8.40609 -7.22772 -6.01432 -3.97124 3.29115 3.37058 3.39012 4.09715 4.44668 4.58666 4.73435 4.80256 5.00473 5.10090 5.17776 5.19191 5.30025 5.34564 5.42165 5.52929 5.55986 5.60450 5.66948 5.68974 5.74372 5.78702 5.82079 5.88802 5.92417 5.95429 6.01190 6.03376 6.05210 6.11485 6.13356 6.16608 6.24886 6.30544 6.37243 6.43074 6.47668 6.60753 6.69484 6.79085 6.83327 6.93887 6.99596 7.01448 7.16567 7.71314 8.01722 8.16506 8.73276 9.09275 9.61376 11.12050 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.005561 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.414536 B = 5033.421070 C = 6879.775308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.112 4.112 5 C 0.056 3.944 6 N -0.527 5.527 7 C 0.159 3.841 8 C -0.501 4.501 9 H 0.079 0.921 10 C 0.067 3.933 11 N -0.903 5.903 12 Si 0.871 3.129 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.056 3.944 17 C -0.095 4.095 18 C 0.062 3.938 19 H 0.055 0.945 20 C -0.120 4.120 21 C -0.123 4.123 22 C 0.030 3.970 23 N -0.509 5.509 24 C 0.004 3.996 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.032 0.968 37 H -0.020 1.020 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -4.781 -16.188 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.150 4.150 5 C -0.072 4.072 6 N -0.251 5.251 7 C 0.032 3.968 8 C -0.539 4.539 9 H 0.097 0.903 10 C -0.134 4.134 11 N -0.542 5.542 12 Si 0.699 3.301 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.071 4.071 17 C -0.134 4.134 18 C -0.046 4.046 19 H 0.073 0.927 20 C -0.158 4.158 21 C -0.162 4.162 22 C -0.098 4.098 23 N -0.234 5.234 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.050 0.950 37 H -0.002 1.002 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.426 -4.304 -16.381 16.997 hybrid contribution -1.662 -0.191 1.025 1.962 sum -3.088 -4.495 -15.356 16.296 Atomic orbital electron populations 1.21894 0.95805 1.01740 1.01118 1.21101 0.95523 0.96008 0.98825 1.21822 1.00962 0.96232 1.01232 1.21678 1.01616 0.94787 0.96923 1.22118 0.96587 0.94424 0.94079 1.61914 1.58010 1.03106 1.02068 1.20250 0.92344 0.95545 0.88616 1.21062 1.10112 1.33899 0.88862 0.90269 1.24892 0.96615 0.95983 0.95914 1.69895 1.38866 1.46900 0.98568 0.86920 0.84367 0.80877 0.77931 1.20468 1.21217 1.19168 1.22297 0.96023 0.89082 0.99736 1.21510 1.00379 0.91592 0.99901 1.22795 0.89426 0.96757 0.95633 0.92743 1.22338 0.97248 0.97227 0.99022 1.22269 0.94962 0.98229 1.00697 1.23104 0.96417 0.90492 0.99835 1.65398 1.03082 1.17906 1.36986 1.22810 0.93128 1.03318 0.95198 0.93363 0.92539 0.92859 0.91607 0.92712 0.93280 0.92772 0.91567 0.91271 0.91945 0.96138 0.94995 1.00232 0.92800 0.90374 0.95173 0.91886 0.90776 0.90904 0.91393 0.91272 0.91700 0.90586 0.94141 0.89900 0.92207 0.94955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.95 37.16 0.33 -1.54 16 2 C -0.10 -1.26 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 4 C -0.11 -1.84 4.65 -26.73 -0.12 -1.97 16 5 C 0.06 0.98 4.54 -3.82 -0.02 0.96 16 6 N -0.53 -10.95 4.35 -236.07 -1.03 -11.98 16 7 C 0.16 3.85 3.67 -4.98 -0.02 3.83 16 8 C -0.50 -14.25 9.06 -34.44 -0.31 -14.56 16 9 H 0.08 2.47 8.04 -52.48 -0.42 2.04 16 10 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 11 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 12 Si 0.87 21.69 27.53 -169.99 -4.68 17.01 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.27 -6.39 6.45 56.52 0.36 -6.02 16 16 C 0.06 1.06 4.10 -3.83 -0.02 1.04 16 17 C -0.10 -1.52 4.81 -26.74 -0.13 -1.65 16 18 C 0.06 0.88 2.45 -66.07 -0.16 0.72 16 19 H 0.05 0.83 7.69 -51.93 -0.40 0.43 16 20 C -0.12 -1.41 6.55 -25.35 -0.17 -1.58 16 21 C -0.12 -1.25 7.00 -25.35 -0.18 -1.43 16 22 C 0.03 0.33 6.43 -2.17 -0.01 0.32 16 23 N -0.51 -6.83 5.34 -230.33 -1.23 -8.06 16 24 C 0.00 0.05 8.89 60.06 0.53 0.58 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.22 6.25 -51.93 -0.32 0.90 16 33 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.06 1.00 6.74 -51.93 -0.35 0.65 16 35 H 0.02 0.36 6.54 -51.93 -0.34 0.02 16 36 H 0.03 0.79 4.72 -51.93 -0.25 0.54 16 37 H -0.02 -0.49 7.59 -51.93 -0.39 -0.89 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.08 1.68 7.26 -51.92 -0.38 1.30 16 40 H 0.03 0.55 4.83 -51.93 -0.25 0.30 16 41 H 0.06 0.98 6.99 -51.93 -0.36 0.62 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 0.84 7.86 -51.92 -0.41 0.44 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.04 0.44 8.00 -51.92 -0.42 0.03 16 49 H 0.08 1.20 5.16 -51.93 -0.27 0.93 16 50 H 0.06 0.68 8.05 -51.93 -0.42 0.27 16 51 H 0.03 0.44 7.71 -51.92 -0.40 0.04 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -29.89 376.54 -10.74 -40.63 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.96 Total: 0.08 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.29 Total: -16.33 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.48 Total: -47.06 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.68 Total: 17.01 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.89 -10.74 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089614791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.058 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds