Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 C 1.52997 * 109.47141 * 119.99983 * 2 1 3 5 5 C 1.52998 * 109.47176 * 65.00229 * 4 2 1 6 6 N 1.46903 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00048 * 66.04015 * 6 5 4 8 8 C 1.50697 * 109.47312 * 199.56074 * 7 6 5 9 9 H 1.08003 * 120.00215 * 356.89451 * 8 7 6 10 10 C 1.37872 * 120.00159 * 176.89538 * 8 7 6 11 11 N 1.31517 * 120.00464 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00036 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47385 * 90.00079 * 12 10 8 14 14 H 1.48507 * 109.47019 * 209.99786 * 12 10 8 15 15 H 1.48503 * 109.46990 * 329.99652 * 12 10 8 16 16 C 1.46893 * 111.00135 * 189.99942 * 6 5 4 17 17 C 1.52997 * 109.47683 * 75.90866 * 16 6 5 18 18 C 1.52992 * 109.47505 * 174.00917 * 17 16 6 19 19 H 1.09003 * 110.36871 * 309.76878 * 18 17 16 20 20 C 1.54384 * 110.41401 * 187.42573 * 18 17 16 21 21 C 1.54258 * 105.06007 * 217.36793 * 20 18 17 22 22 C 1.54376 * 105.06113 * 359.97438 * 21 20 18 23 23 N 1.48555 * 110.41259 * 72.24768 * 18 17 16 24 24 C 1.46900 * 111.00465 * 277.82039 * 23 18 17 25 25 H 1.09002 * 109.47508 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46929 * 299.99860 * 1 2 3 28 28 H 1.09007 * 109.46929 * 240.00139 * 2 1 3 29 29 H 1.09003 * 109.46907 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47159 * 299.99798 * 3 2 1 31 31 H 1.08994 * 109.47421 * 60.00251 * 3 2 1 32 32 H 1.08998 * 109.47110 * 304.99661 * 4 2 1 33 33 H 1.09008 * 109.46771 * 184.99797 * 4 2 1 34 34 H 1.08998 * 109.47564 * 59.99711 * 5 4 2 35 35 H 1.08998 * 109.46932 * 299.99679 * 5 4 2 36 36 H 1.09001 * 109.47390 * 319.56119 * 7 6 5 37 37 H 1.09002 * 109.46906 * 79.55912 * 7 6 5 38 38 H 0.96997 * 120.00734 * 180.02562 * 11 10 8 39 39 H 1.09009 * 109.46907 * 195.91376 * 16 6 5 40 40 H 1.09004 * 109.47466 * 315.90758 * 16 6 5 41 41 H 1.09000 * 109.47139 * 294.01311 * 17 16 6 42 42 H 1.09006 * 109.46646 * 54.00961 * 17 16 6 43 43 H 1.09008 * 110.31967 * 336.26201 * 20 18 17 44 44 H 1.08997 * 110.32409 * 98.36571 * 20 18 17 45 45 H 1.09003 * 110.32075 * 118.89055 * 21 20 18 46 46 H 1.08998 * 110.32568 * 241.10127 * 21 20 18 47 47 H 1.08999 * 110.41700 * 142.63387 * 22 21 20 48 48 H 1.09010 * 110.41135 * 264.95738 * 22 21 20 49 49 H 1.08994 * 109.46802 * 77.35063 * 24 23 18 50 50 H 1.08992 * 109.47183 * 197.35954 * 24 23 18 51 51 H 1.09007 * 109.46862 * 317.35367 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 7 2.1255 -2.8881 2.3871 7 6 1.4525 -2.3908 3.5944 8 6 2.2745 -2.7405 4.8080 9 1 3.1782 -3.3219 4.6989 10 6 1.8731 -2.3185 6.0576 11 7 2.5902 -2.6242 7.1169 12 14 0.3097 -1.3137 6.2465 13 1 -0.8427 -2.2261 6.4576 14 1 0.4428 -0.4061 7.4144 15 1 0.0864 -0.5100 5.0179 16 6 1.9663 -4.3426 2.2569 17 6 3.0447 -4.8920 1.3210 18 6 2.9734 -6.4202 1.3022 19 1 2.9616 -6.8120 2.3193 20 6 4.1650 -7.0052 0.5139 21 6 3.5879 -8.2197 -0.2421 22 6 2.0964 -8.2668 0.1536 23 7 1.7718 -6.8736 0.5557 24 6 0.5768 -6.8372 1.4092 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6054 -0.2617 2.1369 33 1 3.1264 -0.6443 1.2951 34 1 2.0698 -2.6550 0.3002 35 1 0.5490 -2.2724 1.1421 36 1 1.3429 -1.3082 3.5295 37 1 0.4680 -2.8512 3.6774 38 1 2.3076 -2.3276 7.9961 39 1 2.0647 -4.8081 3.2377 40 1 0.9813 -4.5651 1.8465 41 1 2.8818 -4.5082 0.3139 42 1 4.0269 -4.5785 1.6748 43 1 4.5506 -6.2687 -0.1912 44 1 4.9523 -7.3221 1.1977 45 1 3.6902 -8.0793 -1.3182 46 1 4.0912 -9.1345 0.0708 47 1 1.4864 -8.5682 -0.6980 48 1 1.9461 -8.9509 0.9889 49 1 0.2289 -5.8086 1.5034 50 1 -0.2081 -7.4468 0.9617 51 1 0.8231 -7.2292 2.3961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089614791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = -28.348087 kcal Electronic energy + Delta-G solvation = -23644.183307 eV Core-core repulsion = 20576.953021 eV Total energy + Delta-G solvation = -3067.230286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.33755 -39.00485 -36.76447 -34.73660 -33.17149 -33.06920 -30.65712 -29.36129 -27.99071 -27.12413 -26.58323 -24.27971 -23.54177 -21.90023 -21.23030 -21.09186 -20.67529 -19.01599 -17.19543 -16.83909 -16.42166 -16.26378 -16.10262 -15.81227 -15.54375 -14.82586 -14.65598 -14.58360 -14.39253 -14.17141 -13.77685 -13.69539 -13.62270 -13.26677 -13.14980 -13.03976 -12.70357 -12.66103 -12.52995 -12.46018 -12.19605 -12.09401 -11.99186 -11.82796 -11.69629 -11.52102 -11.45908 -11.38170 -11.34976 -11.17280 -11.07095 -10.76552 -9.48431 -8.90075 -8.28396 -6.29901 1.30656 1.32612 1.43261 2.32566 3.02788 3.06082 3.20033 3.69268 3.82747 3.95743 4.05357 4.08012 4.12409 4.17389 4.32047 4.36637 4.43283 4.47490 4.52021 4.55032 4.64825 4.67538 4.70614 4.78425 4.83468 4.86591 4.88230 4.92213 4.93145 5.01556 5.04324 5.05636 5.07474 5.10627 5.19182 5.21010 5.24797 5.28392 5.31318 5.35780 5.44239 5.51369 5.56601 5.61745 5.94309 6.05082 6.06839 6.47882 6.71266 6.76048 7.33009 8.88639 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.005561 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.414536 B = 5033.421070 C = 6879.775308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.109 4.109 5 C 0.060 3.940 6 N -0.544 5.544 7 C 0.172 3.828 8 C -0.507 4.507 9 H 0.034 0.966 10 C 0.008 3.992 11 N -0.949 5.949 12 Si 0.941 3.059 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.250 1.250 16 C 0.063 3.937 17 C -0.082 4.082 18 C 0.062 3.938 19 H 0.033 0.967 20 C -0.119 4.119 21 C -0.117 4.117 22 C 0.027 3.973 23 N -0.516 5.516 24 C 0.007 3.993 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.025 0.975 36 H 0.034 0.966 37 H -0.023 1.023 38 H 0.266 0.734 39 H 0.039 0.961 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -4.537 -18.941 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.068 4.068 6 N -0.268 5.268 7 C 0.045 3.955 8 C -0.545 4.545 9 H 0.052 0.948 10 C -0.189 4.189 11 N -0.590 5.590 12 Si 0.765 3.235 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.174 1.174 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.047 4.047 19 H 0.051 0.949 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.100 4.100 23 N -0.240 5.240 24 C -0.142 4.142 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.052 0.948 37 H -0.005 1.005 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.110 0.890 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.756 -4.070 -19.164 19.784 hybrid contribution -1.171 -0.337 1.869 2.231 sum -3.927 -4.407 -17.294 18.274 Atomic orbital electron populations 1.21884 0.95189 1.01629 1.01738 1.21070 0.95977 0.96492 0.97340 1.21811 1.01040 0.95400 1.01864 1.21647 1.00853 0.94313 0.97835 1.22187 0.96898 0.94807 0.92871 1.61857 1.58214 1.04388 1.02342 1.19960 0.91441 0.95495 0.88622 1.21258 1.09101 1.33129 0.91029 0.94768 1.25795 1.00400 0.97290 0.95370 1.70049 1.41156 1.48533 0.99277 0.85806 0.79708 0.79403 0.78613 1.19403 1.20518 1.17403 1.22240 0.97822 0.87872 0.98476 1.21366 0.98330 0.93112 0.99231 1.22712 0.91376 0.95298 0.95299 0.94855 1.22336 0.96264 0.98084 0.99027 1.22276 0.94080 0.97960 1.01184 1.23216 0.97475 0.88964 1.00385 1.65382 1.02524 1.19742 1.36354 1.22752 0.93840 1.02625 0.94966 0.91138 0.93010 0.93867 0.90181 0.92667 0.91172 0.93614 0.93969 0.92332 0.90125 0.95665 0.94841 1.00501 0.92538 0.94223 0.93994 0.90847 0.92314 0.90524 0.91049 0.89994 0.90120 0.88965 0.94085 0.91424 0.90074 0.96171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.95 71.98 0.64 -2.71 16 2 C -0.09 -2.16 2.92 -10.79 -0.03 -2.19 16 3 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 4 C -0.11 -3.48 4.65 30.59 0.14 -3.34 16 5 C 0.06 2.03 4.54 86.30 0.39 2.42 16 6 N -0.54 -23.05 4.35 -900.80 -3.92 -26.98 16 7 C 0.17 8.51 3.67 85.56 0.31 8.82 16 8 C -0.51 -30.13 9.06 25.60 0.23 -29.90 16 9 H 0.03 2.28 8.04 -2.91 -0.02 2.25 16 10 C 0.01 0.50 5.47 84.65 0.46 0.96 16 11 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 12 Si 0.94 45.16 27.53 68.60 1.89 47.05 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.25 -11.25 6.45 99.48 0.64 -10.61 16 16 C 0.06 2.46 4.10 86.30 0.35 2.81 16 17 C -0.08 -2.64 4.81 30.59 0.15 -2.50 16 18 C 0.06 1.75 2.45 45.06 0.11 1.86 16 19 H 0.03 1.07 7.69 -2.39 -0.02 1.05 16 20 C -0.12 -2.64 6.55 31.49 0.21 -2.43 16 21 C -0.12 -2.07 7.00 31.49 0.22 -1.85 16 22 C 0.03 0.54 6.43 86.44 0.56 1.10 16 23 N -0.52 -13.19 5.34 -882.62 -4.72 -17.91 16 24 C 0.01 0.17 8.89 127.69 1.14 1.31 16 25 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.22 6.56 -2.39 -0.02 1.20 16 27 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 1.54 6.25 -2.39 -0.01 1.53 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 2.44 6.74 -2.39 -0.02 2.43 16 35 H 0.03 0.84 6.54 -2.39 -0.02 0.83 16 36 H 0.03 1.66 4.72 -2.39 -0.01 1.65 16 37 H -0.02 -1.13 7.59 -2.39 -0.02 -1.14 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.04 1.82 7.26 -2.38 -0.02 1.80 16 40 H 0.04 1.53 4.83 -2.38 -0.01 1.52 16 41 H 0.07 2.21 6.99 -2.39 -0.02 2.19 16 42 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.08 1.64 7.86 -2.38 -0.02 1.63 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.04 0.82 8.00 -2.38 -0.02 0.80 16 49 H 0.07 1.94 5.16 -2.39 -0.01 1.93 16 50 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 51 H 0.02 0.56 7.71 -2.38 -0.02 0.54 16 Total: -1.00 -66.85 376.54 -0.12 -66.97 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.79 Total: 19.14 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 5.55 Total: -28.08 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -8.34 Total: -105.07 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.89 Total: 47.05 kcal Total: -66.85 -0.12 -66.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089614791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.620 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds