Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47520 * 2 1 4 4 C 1.53002 * 109.47306 * 239.99440 * 2 1 3 5 5 C 1.52997 * 109.47273 * 295.00560 * 4 2 1 6 6 N 1.46902 * 109.47362 * 176.23337 * 5 4 2 7 7 C 1.46895 * 111.00155 * 198.15391 * 6 5 4 8 8 C 1.50691 * 109.47710 * 75.45951 * 7 6 5 9 9 H 1.08001 * 120.00223 * 5.02268 * 8 7 6 10 10 C 1.37874 * 120.00470 * 185.02753 * 8 7 6 11 11 N 1.31508 * 120.00439 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99705 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.46955 * 90.00485 * 12 10 8 14 14 H 1.48497 * 109.46901 * 210.00258 * 12 10 8 15 15 H 1.48498 * 109.47027 * 329.99997 * 12 10 8 16 16 C 1.46897 * 110.99844 * 74.18975 * 6 5 4 17 17 C 1.53008 * 109.46888 * 190.00114 * 16 6 5 18 18 C 1.52997 * 109.46672 * 185.62040 * 17 16 6 19 19 H 1.09000 * 109.91012 * 53.43523 * 18 17 16 20 20 C 1.53999 * 109.91542 * 174.53784 * 18 17 16 21 21 C 1.54588 * 105.14251 * 120.57911 * 20 18 17 22 22 C 1.54945 * 102.92209 * 21.95632 * 21 20 18 23 23 N 1.47898 * 109.92114 * 292.33045 * 18 17 16 24 24 C 1.46898 * 111.00149 * 94.80695 * 23 18 17 25 25 H 1.09000 * 109.46966 * 300.00498 * 1 2 3 26 26 H 1.08995 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47099 * 59.99877 * 1 2 3 28 28 H 1.09000 * 109.47099 * 120.00123 * 2 1 3 29 29 H 1.09000 * 109.47408 * 59.99772 * 3 2 1 30 30 H 1.09001 * 109.47359 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47035 * 300.00162 * 3 2 1 32 32 H 1.09005 * 109.46834 * 55.00455 * 4 2 1 33 33 H 1.08997 * 109.47124 * 175.00170 * 4 2 1 34 34 H 1.08999 * 109.47169 * 296.23439 * 5 4 2 35 35 H 1.09004 * 109.47146 * 56.23293 * 5 4 2 36 36 H 1.09007 * 109.47052 * 195.46261 * 7 6 5 37 37 H 1.09006 * 109.46592 * 315.45444 * 7 6 5 38 38 H 0.96999 * 120.00471 * 180.02562 * 11 10 8 39 39 H 1.08994 * 109.47706 * 310.00511 * 16 6 5 40 40 H 1.09001 * 109.46454 * 70.00737 * 16 6 5 41 41 H 1.08995 * 109.46981 * 305.62348 * 17 16 6 42 42 H 1.08998 * 109.46814 * 65.62347 * 17 16 6 43 43 H 1.09004 * 110.30812 * 239.49710 * 20 18 17 44 44 H 1.09003 * 110.30412 * 1.65961 * 20 18 17 45 45 H 1.08993 * 110.72990 * 140.31711 * 21 20 18 46 46 H 1.09002 * 110.72351 * 263.60089 * 21 20 18 47 47 H 1.08995 * 110.66462 * 81.02206 * 22 21 20 48 48 H 1.09000 * 110.66693 * 203.98574 * 22 21 20 49 49 H 1.08999 * 109.47536 * 66.44765 * 24 23 18 50 50 H 1.08998 * 109.47555 * 186.45166 * 24 23 18 51 51 H 1.09003 * 109.46957 * 306.45341 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 7 2.0458 -2.8681 -2.4276 7 6 1.3216 -4.1338 -2.6046 8 6 -0.0903 -3.8473 -3.0465 9 1 -0.3938 -2.8332 -3.2607 10 6 -0.9947 -4.8797 -3.1774 11 7 -2.2267 -4.6297 -3.5635 12 14 -0.4696 -6.6339 -2.8076 13 1 -0.7143 -6.9319 -1.3736 14 1 -1.2537 -7.5731 -3.6491 15 1 0.9766 -6.7911 -3.1061 16 6 3.4985 -3.0846 -2.4527 17 6 3.9202 -3.5535 -3.8468 18 6 5.4074 -3.9129 -3.8357 19 1 5.6106 -4.6274 -3.0380 20 6 5.8118 -4.5147 -5.1944 21 6 6.9175 -3.5803 -5.7368 22 6 7.4475 -2.8901 -4.4548 23 7 6.2193 -2.6927 -3.6381 24 6 6.5499 -2.5043 -2.2193 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -0.2618 -2.1370 33 1 3.1263 -0.6445 -1.2950 34 1 2.1235 -2.6714 -0.3375 35 1 0.5537 -2.2709 -1.0747 36 1 1.8238 -4.7370 -3.3611 37 1 1.3035 -4.6772 -1.6599 38 1 -2.8631 -5.3560 -3.6552 39 1 4.0092 -2.1520 -2.2132 40 1 3.7653 -3.8442 -1.7178 41 1 3.3365 -4.4302 -4.1273 42 1 3.7449 -2.7545 -4.5673 43 1 6.2013 -5.5238 -5.0603 44 1 4.9585 -4.5247 -5.8726 45 1 7.7070 -4.1564 -6.2192 46 1 6.4987 -2.8462 -6.4251 47 1 8.1531 -3.5368 -3.9334 48 1 7.9106 -1.9334 -4.6964 49 1 7.2126 -3.3051 -1.8912 50 1 7.0475 -1.5437 -2.0865 51 1 5.6349 -2.5245 -1.6272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089614797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -12.099055 kcal Electronic energy + Delta-G solvation = -23669.109538 eV Core-core repulsion = 20602.583863 eV Total energy + Delta-G solvation = -3066.525675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.28200 -37.51099 -35.50066 -32.60221 -32.20570 -31.67319 -29.07952 -27.81653 -26.85902 -25.91470 -25.37590 -22.37782 -22.29043 -21.12405 -19.94209 -19.61154 -19.44557 -16.79665 -16.08905 -15.53988 -15.18742 -15.02975 -14.42937 -14.16727 -13.93278 -13.74991 -13.66690 -13.17059 -12.98637 -12.76439 -12.46251 -12.35018 -12.20859 -12.07160 -11.88795 -11.79181 -11.49754 -11.28359 -11.17864 -11.08630 -10.99383 -10.81455 -10.59213 -10.46128 -10.42798 -10.26473 -10.19970 -9.98423 -9.77296 -9.50030 -9.21855 -8.51422 -8.40828 -7.25790 -6.00176 -3.95758 3.29283 3.37329 3.39224 3.99400 4.45401 4.55817 4.69161 4.78886 4.97386 5.16068 5.20316 5.26699 5.31351 5.32017 5.34942 5.39680 5.46600 5.57725 5.66498 5.73443 5.75901 5.80969 5.85972 5.88689 5.91082 5.94641 5.97514 6.06945 6.08769 6.11689 6.15934 6.20177 6.24036 6.32484 6.42478 6.51618 6.53799 6.58142 6.77011 6.82395 6.86969 6.93494 6.99409 7.06021 7.12142 7.72602 8.02333 8.18108 8.74890 9.12427 9.62946 11.13275 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.006211 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.261150 B = 4507.253210 C = 7017.747951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.062 3.938 6 N -0.526 5.526 7 C 0.159 3.841 8 C -0.501 4.501 9 H 0.081 0.919 10 C 0.067 3.933 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.056 3.944 17 C -0.100 4.100 18 C 0.067 3.933 19 H 0.047 0.953 20 C -0.129 4.129 21 C -0.122 4.122 22 C 0.033 3.967 23 N -0.513 5.513 24 C 0.010 3.990 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.088 0.912 36 H 0.029 0.971 37 H -0.019 1.019 38 H 0.262 0.738 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.039 0.961 48 H 0.079 0.921 49 H 0.022 0.978 50 H 0.066 0.934 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.362 5.091 2.862 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.067 4.067 6 N -0.249 5.249 7 C 0.033 3.967 8 C -0.540 4.540 9 H 0.099 0.901 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.699 3.301 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.194 1.194 16 C -0.072 4.072 17 C -0.138 4.138 18 C -0.042 4.042 19 H 0.065 0.935 20 C -0.167 4.167 21 C -0.160 4.160 22 C -0.094 4.094 23 N -0.237 5.237 24 C -0.138 4.138 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.106 0.894 36 H 0.047 0.953 37 H -0.001 1.001 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.041 0.959 50 H 0.085 0.915 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.769 5.766 2.278 17.878 hybrid contribution 0.843 -2.349 1.272 2.801 sum 17.612 3.417 3.551 18.289 Atomic orbital electron populations 1.21884 0.95063 1.02586 1.01056 1.21083 0.96198 0.95607 0.98561 1.21819 1.00449 0.96503 1.01330 1.21615 0.99725 0.95642 0.97399 1.22077 1.01969 0.92958 0.89646 1.61915 1.02729 1.25287 1.34998 1.20241 0.95212 0.86665 0.94568 1.21065 0.92420 0.96318 1.44164 0.90075 1.24895 0.94828 0.98466 0.95182 1.69891 1.03892 1.32187 1.48127 0.86924 0.79006 0.85736 0.78430 1.20488 1.21233 1.19355 1.22205 0.90376 0.98976 0.95688 1.21648 0.91796 1.02218 0.98172 1.22472 0.95197 0.90115 0.96426 0.93507 1.22467 0.99249 0.98324 0.96643 1.22459 0.97844 0.98596 0.97142 1.23285 0.92106 0.99890 0.94149 1.64734 1.14697 1.36447 1.07810 1.22669 1.01239 1.00493 0.89424 0.93628 0.91764 0.92554 0.92001 0.93285 0.93168 0.92712 0.91156 0.93017 0.96854 0.89378 0.95292 1.00120 0.92803 0.90989 0.97175 0.91044 0.90420 0.91830 0.90330 0.91426 0.90619 0.94236 0.90310 0.95912 0.91536 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 37.16 0.33 -1.81 16 2 C -0.10 -1.31 2.92 -90.62 -0.26 -1.58 16 3 C -0.14 -1.68 9.19 37.15 0.34 -1.34 16 4 C -0.11 -1.69 4.71 -26.73 -0.13 -1.82 16 5 C 0.06 1.18 4.64 -3.82 -0.02 1.16 16 6 N -0.53 -11.05 4.37 -236.07 -1.03 -12.08 16 7 C 0.16 3.88 3.66 -4.98 -0.02 3.86 16 8 C -0.50 -14.27 9.05 -34.45 -0.31 -14.58 16 9 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 10 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 11 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 12 Si 0.87 21.69 27.37 -169.99 -4.65 17.03 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.43 6.69 56.52 0.38 -6.06 16 16 C 0.06 0.98 3.53 -3.82 -0.01 0.97 16 17 C -0.10 -1.66 4.74 -26.73 -0.13 -1.79 16 18 C 0.07 0.91 2.59 -66.64 -0.17 0.74 16 19 H 0.05 0.65 7.77 -51.93 -0.40 0.25 16 20 C -0.13 -1.53 6.57 -25.38 -0.17 -1.69 16 21 C -0.12 -1.25 7.06 -24.87 -0.18 -1.42 16 22 C 0.03 0.35 6.58 -1.74 -0.01 0.34 16 23 N -0.51 -6.54 5.08 -230.54 -1.17 -7.71 16 24 C 0.01 0.12 9.13 60.06 0.55 0.67 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.04 6.49 -51.93 -0.34 0.70 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.78 6.84 -51.93 -0.35 0.43 16 34 H 0.01 0.25 8.02 -51.93 -0.42 -0.17 16 35 H 0.09 1.90 5.56 -51.93 -0.29 1.61 16 36 H 0.03 0.71 5.22 -51.93 -0.27 0.44 16 37 H -0.02 -0.47 7.16 -51.93 -0.37 -0.84 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.07 1.18 4.76 -51.93 -0.25 0.93 16 40 H 0.01 0.18 8.11 -51.93 -0.42 -0.24 16 41 H 0.07 1.31 6.06 -51.93 -0.31 0.99 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.04 0.39 7.87 -51.93 -0.41 -0.02 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.02 0.24 7.92 -51.93 -0.41 -0.17 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.94 5.27 -51.93 -0.27 0.67 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -29.92 377.40 -10.67 -40.59 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -10.00 Total: -0.14 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.28 Total: -16.44 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -1.43 Total: -46.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.65 Total: 17.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.92 -10.67 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089614797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.487 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds