Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47520 * 2 1 4 4 C 1.53002 * 109.47306 * 239.99440 * 2 1 3 5 5 C 1.52997 * 109.47273 * 295.00560 * 4 2 1 6 6 N 1.46902 * 109.47362 * 176.23337 * 5 4 2 7 7 C 1.46895 * 111.00155 * 198.15391 * 6 5 4 8 8 C 1.50691 * 109.47710 * 75.45951 * 7 6 5 9 9 H 1.08001 * 120.00223 * 5.02268 * 8 7 6 10 10 C 1.37874 * 120.00470 * 185.02753 * 8 7 6 11 11 N 1.31508 * 120.00439 * 180.02562 * 10 8 7 12 12 Si 1.86808 * 119.99705 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.46955 * 90.00485 * 12 10 8 14 14 H 1.48497 * 109.46901 * 210.00258 * 12 10 8 15 15 H 1.48498 * 109.47027 * 329.99997 * 12 10 8 16 16 C 1.46897 * 110.99844 * 74.18975 * 6 5 4 17 17 C 1.53008 * 109.46888 * 190.00114 * 16 6 5 18 18 C 1.52997 * 109.46672 * 185.62040 * 17 16 6 19 19 H 1.09000 * 109.91012 * 53.43523 * 18 17 16 20 20 C 1.53999 * 109.91542 * 174.53784 * 18 17 16 21 21 C 1.54588 * 105.14251 * 120.57911 * 20 18 17 22 22 C 1.54945 * 102.92209 * 21.95632 * 21 20 18 23 23 N 1.47898 * 109.92114 * 292.33045 * 18 17 16 24 24 C 1.46898 * 111.00149 * 94.80695 * 23 18 17 25 25 H 1.09000 * 109.46966 * 300.00498 * 1 2 3 26 26 H 1.08995 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47099 * 59.99877 * 1 2 3 28 28 H 1.09000 * 109.47099 * 120.00123 * 2 1 3 29 29 H 1.09000 * 109.47408 * 59.99772 * 3 2 1 30 30 H 1.09001 * 109.47359 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47035 * 300.00162 * 3 2 1 32 32 H 1.09005 * 109.46834 * 55.00455 * 4 2 1 33 33 H 1.08997 * 109.47124 * 175.00170 * 4 2 1 34 34 H 1.08999 * 109.47169 * 296.23439 * 5 4 2 35 35 H 1.09004 * 109.47146 * 56.23293 * 5 4 2 36 36 H 1.09007 * 109.47052 * 195.46261 * 7 6 5 37 37 H 1.09006 * 109.46592 * 315.45444 * 7 6 5 38 38 H 0.96999 * 120.00471 * 180.02562 * 11 10 8 39 39 H 1.08994 * 109.47706 * 310.00511 * 16 6 5 40 40 H 1.09001 * 109.46454 * 70.00737 * 16 6 5 41 41 H 1.08995 * 109.46981 * 305.62348 * 17 16 6 42 42 H 1.08998 * 109.46814 * 65.62347 * 17 16 6 43 43 H 1.09004 * 110.30812 * 239.49710 * 20 18 17 44 44 H 1.09003 * 110.30412 * 1.65961 * 20 18 17 45 45 H 1.08993 * 110.72990 * 140.31711 * 21 20 18 46 46 H 1.09002 * 110.72351 * 263.60089 * 21 20 18 47 47 H 1.08995 * 110.66462 * 81.02206 * 22 21 20 48 48 H 1.09000 * 110.66693 * 203.98574 * 22 21 20 49 49 H 1.08999 * 109.47536 * 66.44765 * 24 23 18 50 50 H 1.08998 * 109.47555 * 186.45166 * 24 23 18 51 51 H 1.09003 * 109.46957 * 306.45341 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6352 -2.1955 -1.1879 6 7 2.0458 -2.8681 -2.4276 7 6 1.3216 -4.1338 -2.6046 8 6 -0.0903 -3.8473 -3.0465 9 1 -0.3938 -2.8332 -3.2607 10 6 -0.9947 -4.8797 -3.1774 11 7 -2.2267 -4.6297 -3.5635 12 14 -0.4696 -6.6339 -2.8076 13 1 -0.7143 -6.9319 -1.3736 14 1 -1.2537 -7.5731 -3.6491 15 1 0.9766 -6.7911 -3.1061 16 6 3.4985 -3.0846 -2.4527 17 6 3.9202 -3.5535 -3.8468 18 6 5.4074 -3.9129 -3.8357 19 1 5.6106 -4.6274 -3.0380 20 6 5.8118 -4.5147 -5.1944 21 6 6.9175 -3.5803 -5.7368 22 6 7.4475 -2.8901 -4.4548 23 7 6.2193 -2.6927 -3.6381 24 6 6.5499 -2.5043 -2.2193 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -0.2618 -2.1370 33 1 3.1263 -0.6445 -1.2950 34 1 2.1235 -2.6714 -0.3375 35 1 0.5537 -2.2709 -1.0747 36 1 1.8238 -4.7370 -3.3611 37 1 1.3035 -4.6772 -1.6599 38 1 -2.8631 -5.3560 -3.6552 39 1 4.0092 -2.1520 -2.2132 40 1 3.7653 -3.8442 -1.7178 41 1 3.3365 -4.4302 -4.1273 42 1 3.7449 -2.7545 -4.5673 43 1 6.2013 -5.5238 -5.0603 44 1 4.9585 -4.5247 -5.8726 45 1 7.7070 -4.1564 -6.2192 46 1 6.4987 -2.8462 -6.4251 47 1 8.1531 -3.5368 -3.9334 48 1 7.9106 -1.9334 -4.6964 49 1 7.2126 -3.3051 -1.8912 50 1 7.0475 -1.5437 -2.0865 51 1 5.6349 -2.5245 -1.6272 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089614797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -30.741413 kcal Electronic energy + Delta-G solvation = -23669.917931 eV Core-core repulsion = 20602.583863 eV Total energy + Delta-G solvation = -3067.334068 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33626 -38.95147 -36.82883 -34.71168 -33.10940 -33.00328 -30.78167 -29.23603 -27.97103 -27.17987 -26.47556 -24.16096 -23.64924 -22.03296 -21.18871 -21.00199 -20.72621 -18.98387 -17.17860 -16.67968 -16.59075 -16.35334 -15.99757 -15.60602 -15.31833 -15.11967 -14.69809 -14.55823 -14.29035 -14.20225 -13.89555 -13.73082 -13.41134 -13.30865 -13.08380 -13.02418 -12.79995 -12.59896 -12.44509 -12.33767 -12.22218 -12.15042 -11.98709 -11.83203 -11.65025 -11.56966 -11.49374 -11.43993 -11.40788 -11.17699 -10.99349 -10.74529 -9.34365 -8.95433 -8.26760 -6.28247 1.31333 1.32958 1.43998 2.33568 3.05349 3.07670 3.17803 3.70637 3.81820 3.99212 4.01356 4.08547 4.15479 4.23563 4.25392 4.40219 4.42714 4.51372 4.55223 4.56998 4.62924 4.66074 4.74321 4.77329 4.82307 4.87007 4.88065 4.91369 4.98155 5.00155 5.02443 5.05430 5.07795 5.13808 5.17100 5.22735 5.25170 5.28928 5.31614 5.38414 5.43016 5.55266 5.59510 5.61929 6.00801 6.06448 6.16378 6.48601 6.72319 6.78392 7.34811 8.90284 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.006211 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.261150 B = 4507.253210 C = 7017.747951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.094 4.094 5 C 0.064 3.936 6 N -0.544 5.544 7 C 0.172 3.828 8 C -0.507 4.507 9 H 0.035 0.965 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.941 3.059 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.251 1.251 16 C 0.063 3.937 17 C -0.094 4.094 18 C 0.072 3.928 19 H 0.047 0.953 20 C -0.131 4.131 21 C -0.118 4.118 22 C 0.035 3.965 23 N -0.530 5.530 24 C 0.011 3.989 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.054 0.946 36 H 0.032 0.968 37 H -0.021 1.021 38 H 0.266 0.734 39 H 0.087 0.913 40 H 0.015 0.985 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.032 0.968 50 H 0.079 0.921 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.465 4.707 3.856 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.132 4.132 5 C -0.064 4.064 6 N -0.268 5.268 7 C 0.045 3.955 8 C -0.545 4.545 9 H 0.053 0.947 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.765 3.235 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.175 1.175 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.037 4.037 19 H 0.065 0.935 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.092 4.092 23 N -0.255 5.255 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.050 0.950 37 H -0.003 1.003 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.050 0.950 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.899 5.402 3.276 20.878 hybrid contribution -0.158 -2.117 0.944 2.324 sum 19.742 3.285 4.220 20.453 Atomic orbital electron populations 1.21871 0.96040 1.00995 1.01618 1.21070 0.95323 0.97089 0.97548 1.21768 1.01211 0.94620 1.01969 1.21516 1.00456 0.93363 0.97883 1.22060 1.00030 0.95033 0.89285 1.61861 1.04770 1.23758 1.36365 1.19965 0.93166 0.88273 0.94123 1.21236 0.94870 0.94375 1.44028 0.94698 1.25792 0.94646 1.03465 0.94896 1.70047 1.05339 1.33893 1.49614 0.85801 0.79522 0.79520 0.78644 1.19488 1.20510 1.17505 1.22241 0.87889 0.99911 0.96404 1.21554 0.94121 1.00553 0.97000 1.22332 0.93160 0.90673 0.97543 0.93487 1.22480 0.99546 0.99400 0.95473 1.22463 0.97753 0.98276 0.97077 1.23347 0.91341 1.00776 0.93772 1.64680 1.16013 1.35878 1.08906 1.22668 1.00947 1.01590 0.88517 0.91384 0.94428 0.93654 0.90929 0.91622 0.91905 0.93154 0.93261 0.91450 0.95738 0.92760 0.95042 1.00284 0.92541 0.89453 0.96732 0.93143 0.92076 0.90517 0.91562 0.89227 0.91216 0.93114 0.89248 0.94974 0.90227 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 8.95 71.98 0.64 -3.69 16 2 C -0.09 -2.41 2.92 -10.80 -0.03 -2.44 16 3 C -0.14 -2.93 9.19 71.98 0.66 -2.26 16 4 C -0.09 -3.00 4.71 30.59 0.14 -2.86 16 5 C 0.06 2.49 4.64 86.30 0.40 2.89 16 6 N -0.54 -23.30 4.37 -900.80 -3.93 -27.24 16 7 C 0.17 8.52 3.66 85.56 0.31 8.83 16 8 C -0.51 -30.14 9.05 25.60 0.23 -29.90 16 9 H 0.03 2.33 8.06 -2.91 -0.02 2.31 16 10 C 0.01 0.53 5.47 84.65 0.46 1.00 16 11 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 12 Si 0.94 45.06 27.37 68.60 1.88 46.94 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.25 -11.24 6.69 99.48 0.67 -10.57 16 16 C 0.06 2.17 3.53 86.31 0.30 2.48 16 17 C -0.09 -3.10 4.74 30.60 0.14 -2.96 16 18 C 0.07 1.85 2.59 45.06 0.12 1.97 16 19 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 20 C -0.13 -2.88 6.57 31.47 0.21 -2.68 16 21 C -0.12 -2.11 7.06 31.80 0.22 -1.88 16 22 C 0.03 0.63 6.58 86.60 0.57 1.20 16 23 N -0.53 -12.35 5.08 -883.30 -4.48 -16.84 16 24 C 0.01 0.23 9.13 127.69 1.17 1.39 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.28 6.49 -2.39 -0.02 1.26 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.07 1.93 6.84 -2.39 -0.02 1.91 16 34 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 35 H 0.05 2.48 5.56 -2.38 -0.01 2.46 16 36 H 0.03 1.55 5.22 -2.38 -0.01 1.54 16 37 H -0.02 -1.02 7.16 -2.38 -0.02 -1.03 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.09 2.75 4.76 -2.39 -0.01 2.74 16 40 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 41 H 0.05 1.86 6.06 -2.39 -0.01 1.84 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.07 1.61 7.69 -2.39 -0.02 1.59 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 0.82 7.87 -2.39 -0.02 0.80 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.03 0.59 7.92 -2.39 -0.02 0.57 16 50 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.06 1.45 5.27 -2.39 -0.01 1.44 16 Total: -1.00 -67.01 377.40 0.13 -66.88 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.81 Total: 19.23 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 5.56 Total: -28.92 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -8.12 Total: -104.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -67.01 0.13 -66.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089614797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.141 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds