Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 C 1.52997 * 109.47020 * 173.89374 * 3 2 1 5 5 C 1.52999 * 109.47261 * 186.55448 * 4 3 2 6 6 C 1.52998 * 109.47315 * 293.89302 * 3 2 1 7 7 N 1.46896 * 109.47592 * 171.74965 * 6 3 2 8 8 C 1.46899 * 110.99811 * 282.39856 * 7 6 3 9 9 C 1.50705 * 109.47503 * 77.80687 * 8 7 6 10 10 H 1.08000 * 119.99687 * 2.39343 * 9 8 7 11 11 C 1.37873 * 120.00285 * 182.38915 * 9 8 7 12 12 N 1.31515 * 120.00117 * 354.93340 * 11 9 8 13 13 Si 1.86801 * 119.99854 * 174.93348 * 11 9 8 14 14 H 1.48497 * 109.47347 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46883 * 120.00151 * 13 11 9 16 16 H 1.48496 * 109.46796 * 239.99797 * 13 11 9 17 17 C 1.46896 * 111.00179 * 158.44556 * 7 6 3 18 18 C 1.53004 * 109.46721 * 293.95161 * 17 7 6 19 19 N 1.46898 * 109.46975 * 180.02562 * 18 17 7 20 20 C 1.48529 * 111.00359 * 52.59983 * 19 18 17 21 21 C 1.54940 * 103.23029 * 159.72191 * 20 19 18 22 22 C 1.54597 * 102.92101 * 322.58989 * 21 20 19 23 23 C 1.47895 * 111.00404 * 170.00247 * 19 18 17 24 24 H 1.08998 * 109.47477 * 185.53097 * 1 2 3 25 25 H 1.09006 * 109.47054 * 305.52664 * 1 2 3 26 26 H 1.08997 * 109.47148 * 65.52669 * 1 2 3 27 27 H 1.09001 * 109.47244 * 239.99819 * 2 1 3 28 28 H 1.09004 * 109.47320 * 119.99672 * 2 1 3 29 29 H 1.09003 * 109.47492 * 53.89684 * 3 2 1 30 30 H 1.08997 * 109.47544 * 306.55263 * 4 3 2 31 31 H 1.09006 * 109.47152 * 66.55326 * 4 3 2 32 32 H 1.09000 * 109.47705 * 184.58308 * 5 4 3 33 33 H 1.09003 * 109.47372 * 304.58381 * 5 4 3 34 34 H 1.09003 * 109.47050 * 64.58143 * 5 4 3 35 35 H 1.09008 * 109.46849 * 51.74353 * 6 3 2 36 36 H 1.08999 * 109.46892 * 291.75506 * 6 3 2 37 37 H 1.08998 * 109.47149 * 197.80482 * 8 7 6 38 38 H 1.09001 * 109.47217 * 317.80977 * 8 7 6 39 39 H 0.96995 * 120.00123 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.47010 * 173.95632 * 17 7 6 41 41 H 1.09002 * 109.47464 * 53.95362 * 17 7 6 42 42 H 1.09001 * 109.47062 * 299.99808 * 18 17 7 43 43 H 1.08997 * 109.46885 * 60.00677 * 18 17 7 44 44 H 1.09000 * 110.67562 * 278.16186 * 20 19 18 45 45 H 1.09006 * 110.66243 * 41.28807 * 20 19 18 46 46 H 1.09001 * 110.72345 * 204.23718 * 21 20 19 47 47 H 1.09003 * 110.72169 * 80.94661 * 21 20 19 48 48 H 1.08999 * 110.30768 * 263.04017 * 22 21 20 49 49 H 1.08997 * 110.30968 * 140.86697 * 22 21 20 50 50 H 1.09001 * 109.91357 * 333.50859 * 23 19 18 51 51 H 1.08998 * 109.92163 * 94.60027 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5622 1.4453 0.1534 5 6 4.0557 2.8842 0.3175 6 6 1.6591 2.1181 -1.3188 7 7 1.9711 3.5516 -1.2428 8 6 0.9552 4.2707 -0.4626 9 6 1.1931 4.0384 1.0073 10 1 2.0391 3.4503 1.3310 11 6 0.3307 4.5765 1.9388 12 7 -0.6408 5.3741 1.5519 13 14 0.5422 4.1727 3.7503 14 1 1.7005 3.2595 3.9220 15 1 0.7813 5.4250 4.5119 16 1 -0.6875 3.5123 4.2570 17 6 2.1121 4.1316 -2.5850 18 6 3.3374 3.5286 -3.2750 19 7 3.4788 4.1091 -4.6170 20 6 3.4722 5.5932 -4.5584 21 6 4.1388 6.0037 -5.8955 22 6 5.2347 4.9290 -6.0798 23 6 4.7753 3.7351 -5.2224 24 1 -0.3634 -1.0228 0.0990 25 1 -0.3633 0.5972 0.8364 26 1 -0.3633 0.4257 -0.9353 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5902 1.9870 0.8303 30 1 3.8399 0.8636 1.0324 31 1 4.0176 1.0038 -0.7331 32 1 5.1453 2.8937 0.3452 33 1 3.7083 3.4855 -0.5227 34 1 3.6650 3.2985 1.2469 35 1 0.5920 1.9875 -1.4991 36 1 2.2233 1.6663 -2.1347 37 1 1.0203 5.3374 -0.6769 38 1 -0.0358 3.9057 -0.7324 39 1 -1.2477 5.7524 2.2071 40 1 2.2361 5.2115 -2.5029 41 1 1.2200 3.9119 -3.1714 42 1 4.2295 3.7485 -2.6885 43 1 3.2134 2.4488 -3.3570 44 1 2.4515 5.9717 -4.5053 45 1 4.0595 5.9473 -3.7111 46 1 4.5817 6.9966 -5.8168 47 1 3.4191 5.9648 -6.7132 48 1 6.1949 5.3029 -5.7242 49 1 5.3059 4.6370 -7.1275 50 1 5.5072 3.5368 -4.4393 51 1 4.6520 2.8508 -5.8475 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089907888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = 1.265783 kcal Electronic energy + Delta-G solvation = -24345.129620 eV Core-core repulsion = 21279.183488 eV Total energy + Delta-G solvation = -3065.946132 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.08267 -37.91771 -34.78555 -32.90932 -31.83653 -31.30970 -28.98853 -27.98909 -27.39709 -25.43328 -24.18050 -22.41151 -21.26452 -21.00481 -20.67173 -19.77861 -19.20581 -16.37395 -16.06041 -15.83637 -15.23260 -14.64260 -14.46845 -14.23348 -13.73679 -13.70781 -13.27782 -12.98001 -12.76603 -12.61023 -12.30706 -12.18995 -11.83963 -11.73538 -11.55989 -11.41045 -11.20002 -11.11849 -11.07237 -10.87134 -10.84318 -10.65563 -10.59246 -10.49198 -10.35012 -10.26289 -10.11482 -9.71450 -9.63820 -9.27033 -8.70728 -8.29215 -8.27994 -6.99368 -5.99870 -3.97455 3.31010 3.39673 3.43255 4.04843 4.44725 4.63997 4.70095 4.89810 5.08660 5.31380 5.32677 5.38904 5.46342 5.51076 5.53311 5.60888 5.68775 5.73343 5.77454 5.81193 5.88585 5.96564 5.99588 6.05449 6.13524 6.14689 6.16240 6.23698 6.29009 6.36121 6.39261 6.46280 6.52695 6.60677 6.72338 6.79181 6.80013 6.99395 7.00702 7.09048 7.15673 7.31635 7.33006 7.47936 7.78434 7.95529 8.15099 8.23303 8.57814 9.10715 9.64321 11.10851 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.004985 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.343890 B = 5615.285099 C = 6430.328953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.096 4.096 5 C -0.173 4.173 6 C 0.073 3.927 7 N -0.525 5.525 8 C 0.193 3.807 9 C -0.507 4.507 10 H 0.089 0.911 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.885 3.115 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.054 3.946 18 C 0.050 3.950 19 N -0.520 5.520 20 C 0.033 3.967 21 C -0.124 4.124 22 C -0.130 4.130 23 C 0.036 3.964 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.013 0.987 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.049 0.951 37 H 0.024 0.976 38 H -0.006 1.006 39 H 0.258 0.742 40 H 0.068 0.932 41 H 0.029 0.971 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.043 0.957 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.705 -4.295 -11.146 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.127 4.127 4 C -0.134 4.134 5 C -0.230 4.230 6 C -0.055 4.055 7 N -0.249 5.249 8 C 0.068 3.932 9 C -0.545 4.545 10 H 0.107 0.893 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.713 3.287 14 H -0.195 1.195 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.075 4.075 18 C -0.078 4.078 19 N -0.244 5.244 20 C -0.095 4.095 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.092 4.092 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.032 0.968 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.062 0.938 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.556 -4.340 -11.136 14.699 hybrid contribution -0.127 -0.043 1.182 1.189 sum 8.428 -4.383 -9.954 13.760 Atomic orbital electron populations 1.21788 0.96319 1.00202 1.02446 1.21537 0.95661 0.97720 1.00414 1.21747 0.95698 0.94158 1.01123 1.21313 0.95562 0.97750 0.98770 1.22469 0.96579 0.97486 1.06447 1.22067 0.97757 0.89036 0.96598 1.62188 1.49199 1.02421 1.11126 1.19795 0.87343 0.93180 0.92930 1.21666 1.11096 1.31554 0.90207 0.89331 1.24995 0.95654 0.95241 0.98723 1.69980 1.17978 1.31820 1.33983 0.86634 0.78059 0.78251 0.85747 1.19474 1.21207 1.21175 1.22076 0.95673 0.99085 0.90633 1.22394 0.98555 0.99568 0.87266 1.64779 1.31188 1.07433 1.21050 1.23248 1.01171 0.88539 0.96537 1.22490 0.97682 0.98090 0.97983 1.22387 0.98572 0.95666 1.00226 1.22844 0.90374 0.98314 0.97717 0.94052 0.92130 0.92899 0.93444 0.92831 0.85990 0.94432 0.94418 0.96785 0.86755 0.92274 0.95308 0.93255 0.95798 0.98830 0.93180 0.91342 0.95319 0.93844 0.90840 0.89884 0.93408 0.91289 0.90947 0.91728 0.91316 0.93826 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.57 37.16 0.36 -2.04 16 2 C -0.12 -1.83 5.39 -26.73 -0.14 -1.97 16 3 C -0.11 -2.00 1.84 -90.62 -0.17 -2.17 16 4 C -0.10 -1.67 5.39 -26.73 -0.14 -1.81 16 5 C -0.17 -3.24 8.65 37.16 0.32 -2.92 16 6 C 0.07 1.36 4.13 -3.83 -0.02 1.35 16 7 N -0.53 -10.46 1.12 -236.07 -0.27 -10.72 16 8 C 0.19 4.73 4.79 -4.97 -0.02 4.71 16 9 C -0.51 -13.18 7.17 -34.44 -0.25 -13.43 16 10 H 0.09 2.23 2.78 -52.49 -0.15 2.09 16 11 C 0.05 1.50 5.45 -17.82 -0.10 1.40 16 12 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 13 Si 0.88 21.14 29.54 -169.99 -5.02 16.11 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 C 0.05 0.95 4.57 -3.82 -0.02 0.93 16 18 C 0.05 0.76 4.78 -3.82 -0.02 0.74 16 19 N -0.52 -7.10 5.40 -230.45 -1.24 -8.35 16 20 C 0.03 0.42 5.10 -1.90 -0.01 0.41 16 21 C -0.12 -1.27 7.06 -24.87 -0.18 -1.44 16 22 C -0.13 -1.26 6.93 -25.37 -0.18 -1.43 16 23 C 0.04 0.41 6.69 -2.76 -0.02 0.39 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.85 6.69 -51.93 -0.35 0.50 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.12 2.68 4.41 -51.93 -0.23 2.45 16 30 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.11 2.25 4.18 -51.93 -0.22 2.03 16 34 H 0.06 1.24 6.00 -51.93 -0.31 0.93 16 35 H 0.03 0.57 5.91 -51.92 -0.31 0.26 16 36 H 0.05 0.84 5.82 -51.93 -0.30 0.53 16 37 H 0.02 0.64 7.70 -51.93 -0.40 0.24 16 38 H -0.01 -0.17 7.67 -51.93 -0.40 -0.56 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.07 1.23 6.47 -51.93 -0.34 0.90 16 41 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 42 H 0.04 0.68 7.31 -51.93 -0.38 0.30 16 43 H 0.07 1.12 6.24 -51.93 -0.32 0.80 16 44 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 45 H 0.05 0.63 8.00 -51.93 -0.42 0.22 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -27.16 366.66 -10.37 -37.54 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -9.53 Total: 2.45 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -0.58 Total: -17.29 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.77 Total: -44.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.16 -10.37 -37.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089907888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.802 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds