Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 C 1.52997 * 109.47020 * 173.89374 * 3 2 1 5 5 C 1.52999 * 109.47261 * 186.55448 * 4 3 2 6 6 C 1.52998 * 109.47315 * 293.89302 * 3 2 1 7 7 N 1.46896 * 109.47592 * 171.74965 * 6 3 2 8 8 C 1.46899 * 110.99811 * 282.39856 * 7 6 3 9 9 C 1.50705 * 109.47503 * 77.80687 * 8 7 6 10 10 H 1.08000 * 119.99687 * 2.39343 * 9 8 7 11 11 C 1.37873 * 120.00285 * 182.38915 * 9 8 7 12 12 N 1.31515 * 120.00117 * 354.93340 * 11 9 8 13 13 Si 1.86801 * 119.99854 * 174.93348 * 11 9 8 14 14 H 1.48497 * 109.47347 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46883 * 120.00151 * 13 11 9 16 16 H 1.48496 * 109.46796 * 239.99797 * 13 11 9 17 17 C 1.46896 * 111.00179 * 158.44556 * 7 6 3 18 18 C 1.53004 * 109.46721 * 293.95161 * 17 7 6 19 19 N 1.46898 * 109.46975 * 180.02562 * 18 17 7 20 20 C 1.48529 * 111.00359 * 52.59983 * 19 18 17 21 21 C 1.54940 * 103.23029 * 159.72191 * 20 19 18 22 22 C 1.54597 * 102.92101 * 322.58989 * 21 20 19 23 23 C 1.47895 * 111.00404 * 170.00247 * 19 18 17 24 24 H 1.08998 * 109.47477 * 185.53097 * 1 2 3 25 25 H 1.09006 * 109.47054 * 305.52664 * 1 2 3 26 26 H 1.08997 * 109.47148 * 65.52669 * 1 2 3 27 27 H 1.09001 * 109.47244 * 239.99819 * 2 1 3 28 28 H 1.09004 * 109.47320 * 119.99672 * 2 1 3 29 29 H 1.09003 * 109.47492 * 53.89684 * 3 2 1 30 30 H 1.08997 * 109.47544 * 306.55263 * 4 3 2 31 31 H 1.09006 * 109.47152 * 66.55326 * 4 3 2 32 32 H 1.09000 * 109.47705 * 184.58308 * 5 4 3 33 33 H 1.09003 * 109.47372 * 304.58381 * 5 4 3 34 34 H 1.09003 * 109.47050 * 64.58143 * 5 4 3 35 35 H 1.09008 * 109.46849 * 51.74353 * 6 3 2 36 36 H 1.08999 * 109.46892 * 291.75506 * 6 3 2 37 37 H 1.08998 * 109.47149 * 197.80482 * 8 7 6 38 38 H 1.09001 * 109.47217 * 317.80977 * 8 7 6 39 39 H 0.96995 * 120.00123 * 179.97438 * 12 11 9 40 40 H 1.09006 * 109.47010 * 173.95632 * 17 7 6 41 41 H 1.09002 * 109.47464 * 53.95362 * 17 7 6 42 42 H 1.09001 * 109.47062 * 299.99808 * 18 17 7 43 43 H 1.08997 * 109.46885 * 60.00677 * 18 17 7 44 44 H 1.09000 * 110.67562 * 278.16186 * 20 19 18 45 45 H 1.09006 * 110.66243 * 41.28807 * 20 19 18 46 46 H 1.09001 * 110.72345 * 204.23718 * 21 20 19 47 47 H 1.09003 * 110.72169 * 80.94661 * 21 20 19 48 48 H 1.08999 * 110.30768 * 263.04017 * 22 21 20 49 49 H 1.08997 * 110.30968 * 140.86697 * 22 21 20 50 50 H 1.09001 * 109.91357 * 333.50859 * 23 19 18 51 51 H 1.08998 * 109.92163 * 94.60027 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5622 1.4453 0.1534 5 6 4.0557 2.8842 0.3175 6 6 1.6591 2.1181 -1.3188 7 7 1.9711 3.5516 -1.2428 8 6 0.9552 4.2707 -0.4626 9 6 1.1931 4.0384 1.0073 10 1 2.0391 3.4503 1.3310 11 6 0.3307 4.5765 1.9388 12 7 -0.6408 5.3741 1.5519 13 14 0.5422 4.1727 3.7503 14 1 1.7005 3.2595 3.9220 15 1 0.7813 5.4250 4.5119 16 1 -0.6875 3.5123 4.2570 17 6 2.1121 4.1316 -2.5850 18 6 3.3374 3.5286 -3.2750 19 7 3.4788 4.1091 -4.6170 20 6 3.4722 5.5932 -4.5584 21 6 4.1388 6.0037 -5.8955 22 6 5.2347 4.9290 -6.0798 23 6 4.7753 3.7351 -5.2224 24 1 -0.3634 -1.0228 0.0990 25 1 -0.3633 0.5972 0.8364 26 1 -0.3633 0.4257 -0.9353 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5902 1.9870 0.8303 30 1 3.8399 0.8636 1.0324 31 1 4.0176 1.0038 -0.7331 32 1 5.1453 2.8937 0.3452 33 1 3.7083 3.4855 -0.5227 34 1 3.6650 3.2985 1.2469 35 1 0.5920 1.9875 -1.4991 36 1 2.2233 1.6663 -2.1347 37 1 1.0203 5.3374 -0.6769 38 1 -0.0358 3.9057 -0.7324 39 1 -1.2477 5.7524 2.2071 40 1 2.2361 5.2115 -2.5029 41 1 1.2200 3.9119 -3.1714 42 1 4.2295 3.7485 -2.6885 43 1 3.2134 2.4488 -3.3570 44 1 2.4515 5.9717 -4.5053 45 1 4.0595 5.9473 -3.7111 46 1 4.5817 6.9966 -5.8168 47 1 3.4191 5.9648 -6.7132 48 1 6.1949 5.3029 -5.7242 49 1 5.3059 4.6370 -7.1275 50 1 5.5072 3.5368 -4.4393 51 1 4.6520 2.8508 -5.8475 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089907888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = -12.310241 kcal Electronic energy + Delta-G solvation = -24345.718320 eV Core-core repulsion = 21279.183488 eV Total energy + Delta-G solvation = -3066.534833 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30813 -39.26782 -36.23453 -34.79333 -33.17824 -32.69752 -30.02032 -29.61553 -28.84593 -26.99621 -25.71199 -23.92442 -22.62314 -22.37652 -21.65805 -21.05785 -20.75841 -18.28030 -17.35048 -16.92372 -16.61500 -16.46958 -15.80834 -15.69816 -15.10413 -14.80756 -14.67729 -14.43250 -14.37747 -13.84741 -13.80074 -13.51264 -13.24167 -13.16143 -12.97113 -12.93582 -12.71457 -12.50120 -12.31918 -12.28098 -12.21022 -12.14269 -12.01694 -11.93791 -11.74662 -11.55708 -11.40068 -11.20831 -11.10478 -10.99034 -10.61116 -10.28071 -9.36925 -8.69830 -8.11029 -6.14031 1.39342 1.41939 1.53071 2.43011 2.91205 3.21136 3.49565 3.76921 3.80393 4.04731 4.10797 4.14754 4.15915 4.30103 4.38989 4.40040 4.51861 4.59020 4.66148 4.71148 4.75688 4.77470 4.79929 4.86999 4.92835 4.93859 4.99899 5.02041 5.05792 5.09339 5.10583 5.20703 5.22464 5.22886 5.29211 5.34866 5.37098 5.39140 5.44647 5.52508 5.64904 5.80847 5.96234 5.99560 6.08355 6.20898 6.24021 6.45359 6.69335 7.02862 7.51662 9.00128 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.004985 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.343890 B = 5615.285099 C = 6430.328953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.109 4.109 4 C -0.091 4.091 5 C -0.169 4.169 6 C 0.076 3.924 7 N -0.519 5.519 8 C 0.210 3.790 9 C -0.502 4.502 10 H 0.100 0.900 11 C 0.000 4.000 12 N -0.939 5.939 13 Si 0.946 3.054 14 H -0.259 1.259 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.058 3.942 18 C 0.067 3.933 19 N -0.530 5.530 20 C 0.028 3.972 21 C -0.119 4.119 22 C -0.125 4.125 23 C 0.032 3.968 24 H 0.067 0.933 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.102 0.898 34 H 0.029 0.971 35 H 0.011 0.989 36 H 0.074 0.926 37 H -0.006 1.006 38 H -0.040 1.040 39 H 0.258 0.742 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 -6.149 -11.981 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.226 4.226 6 C -0.051 4.051 7 N -0.243 5.243 8 C 0.084 3.916 9 C -0.540 4.540 10 H 0.118 0.882 11 C -0.197 4.197 12 N -0.581 5.581 13 Si 0.773 3.227 14 H -0.183 1.183 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.070 4.070 18 C -0.061 4.061 19 N -0.255 5.255 20 C -0.100 4.100 21 C -0.157 4.157 22 C -0.163 4.163 23 C -0.095 4.095 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.121 0.879 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.092 0.908 37 H 0.012 0.988 38 H -0.022 1.022 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.847 -6.209 -11.984 17.315 hybrid contribution -0.825 0.541 1.358 1.678 sum 10.022 -5.668 -10.626 15.667 Atomic orbital electron populations 1.21764 0.96786 1.01198 1.00845 1.21497 0.95190 0.96015 1.02066 1.21639 0.96591 0.95422 0.99076 1.21275 0.94438 0.96884 1.00274 1.22357 0.97681 0.98286 1.04257 1.22111 0.97133 0.87976 0.97914 1.62178 1.46834 1.03122 1.12127 1.19433 0.86934 0.91753 0.93519 1.22041 1.10850 1.30366 0.90768 0.88243 1.25795 0.95606 0.95343 1.02959 1.70117 1.19248 1.33468 1.35278 0.85659 0.78230 0.78055 0.80791 1.18250 1.21142 1.21060 1.22065 0.96779 0.98698 0.89476 1.22142 0.96570 0.99447 0.87933 1.64778 1.33029 1.07915 1.19817 1.23271 1.00644 0.88162 0.97943 1.22481 0.97843 0.99121 0.96258 1.22392 0.98573 0.94468 1.00880 1.22947 0.89111 0.99518 0.97968 0.91448 0.94807 0.93732 0.91164 0.91644 0.89884 0.93392 0.92179 0.94936 0.87946 0.95160 0.97048 0.90751 0.98784 1.02235 0.93333 0.92422 0.96373 0.94172 0.90425 0.91218 0.94296 0.89866 0.90676 0.90679 0.89678 0.93803 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.57 71.98 0.69 -3.90 16 2 C -0.11 -3.22 5.39 30.59 0.16 -3.06 16 3 C -0.11 -3.87 1.84 -10.79 -0.02 -3.89 16 4 C -0.09 -2.92 5.39 30.59 0.16 -2.76 16 5 C -0.17 -6.09 8.65 71.98 0.62 -5.47 16 6 C 0.08 2.80 4.13 86.30 0.36 3.16 16 7 N -0.52 -21.15 1.12 -900.78 -1.01 -22.16 16 8 C 0.21 10.87 4.79 85.56 0.41 11.28 16 9 C -0.50 -26.97 7.17 25.60 0.18 -26.79 16 10 H 0.10 5.09 2.78 -2.91 -0.01 5.09 16 11 C 0.00 -0.01 5.45 84.65 0.46 0.45 16 12 N -0.94 -56.64 13.29 21.45 0.29 -56.36 16 13 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 17 C 0.06 2.11 4.57 86.31 0.39 2.50 16 18 C 0.07 1.97 4.78 86.30 0.41 2.38 16 19 N -0.53 -13.87 5.40 -883.02 -4.76 -18.63 16 20 C 0.03 0.69 5.10 86.65 0.44 1.13 16 21 C -0.12 -2.20 7.06 31.80 0.22 -1.97 16 22 C -0.13 -2.05 6.93 31.47 0.22 -1.84 16 23 C 0.03 0.66 6.69 86.45 0.58 1.24 16 24 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.04 1.42 6.69 -2.39 -0.02 1.40 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.78 8.13 -2.38 -0.02 1.76 16 29 H 0.08 3.66 4.41 -2.39 -0.01 3.65 16 30 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.06 1.68 8.11 -2.38 -0.02 1.66 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 3.95 4.18 -2.39 -0.01 3.94 16 34 H 0.03 1.24 6.00 -2.39 -0.01 1.23 16 35 H 0.01 0.46 5.91 -2.38 -0.01 0.45 16 36 H 0.07 2.37 5.82 -2.39 -0.01 2.36 16 37 H -0.01 -0.34 7.70 -2.39 -0.02 -0.36 16 38 H -0.04 -2.31 7.67 -2.39 -0.02 -2.33 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.06 2.18 6.47 -2.38 -0.02 2.17 16 41 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.04 1.21 7.31 -2.39 -0.02 1.19 16 43 H 0.08 2.20 6.24 -2.39 -0.01 2.19 16 44 H 0.07 1.88 7.66 -2.39 -0.02 1.87 16 45 H 0.04 1.03 8.00 -2.38 -0.02 1.01 16 46 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.04 0.91 7.57 -2.39 -0.02 0.89 16 51 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -60.56 366.66 2.71 -57.85 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.87 Total: 20.53 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 5.30 Total: -27.52 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -5.49 Total: -97.15 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.56 2.71 -57.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089907888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.538 kcal (2) G-P(sol) polarization free energy of solvation -60.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds