Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46902 * 111.00248 * 2 1 4 4 C 1.52996 * 109.47309 * 199.91073 * 3 2 1 5 5 H 1.08996 * 109.50434 * 304.89736 * 4 3 2 6 6 C 1.53121 * 109.50468 * 184.77692 * 4 3 2 7 7 C 1.53114 * 109.16133 * 182.40554 * 6 4 3 8 8 C 1.53040 * 109.28221 * 57.65644 * 7 6 4 9 9 N 1.46848 * 109.52121 * 300.82100 * 8 7 6 10 10 C 1.46902 * 110.99829 * 185.83490 * 9 8 7 11 11 C 1.46845 * 111.19550 * 61.74035 * 9 8 7 12 12 C 1.46899 * 111.00032 * 123.95054 * 2 1 3 13 13 C 1.53000 * 109.47222 * 85.66458 * 12 2 1 14 14 C 1.52995 * 109.47315 * 64.58781 * 13 12 2 15 15 C 1.53004 * 109.46866 * 304.58973 * 13 12 2 16 16 C 1.53001 * 109.47357 * 184.59379 * 13 12 2 17 17 C 1.50697 * 109.47391 * 179.97438 * 16 13 12 18 18 H 1.08004 * 119.99685 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00239 * 179.72340 * 17 16 13 20 20 N 1.31512 * 119.99820 * 0.27425 * 19 17 16 21 21 Si 1.86792 * 120.00101 * 180.27813 * 19 17 16 22 22 H 1.48508 * 109.47416 * 90.00170 * 21 19 17 23 23 H 1.48506 * 109.47452 * 209.99944 * 21 19 17 24 24 H 1.48499 * 109.47291 * 329.99879 * 21 19 17 25 25 H 1.09000 * 109.47657 * 290.21815 * 1 2 3 26 26 H 1.08998 * 109.47434 * 50.22446 * 1 2 3 27 27 H 1.09000 * 109.47213 * 170.22112 * 1 2 3 28 28 H 1.09004 * 109.46778 * 319.90681 * 3 2 1 29 29 H 1.08999 * 109.47308 * 79.90745 * 3 2 1 30 30 H 1.09002 * 109.52499 * 302.31400 * 6 4 3 31 31 H 1.09002 * 109.51973 * 62.49824 * 6 4 3 32 32 H 1.09001 * 109.50452 * 297.71015 * 7 6 4 33 33 H 1.09001 * 109.53797 * 177.62339 * 7 6 4 34 34 H 1.08998 * 109.46372 * 180.80629 * 8 7 6 35 35 H 1.08997 * 109.44841 * 60.83262 * 8 7 6 36 36 H 1.09001 * 109.47218 * 295.79353 * 10 9 8 37 37 H 1.08999 * 109.46898 * 55.79096 * 10 9 8 38 38 H 1.09002 * 109.46999 * 175.78861 * 10 9 8 39 39 H 1.09008 * 109.46070 * 178.24121 * 11 9 8 40 40 H 1.09001 * 109.46629 * 58.27375 * 11 9 8 41 41 H 1.08997 * 109.47308 * 325.66142 * 12 2 1 42 42 H 1.09003 * 109.47511 * 205.66001 * 12 2 1 43 43 H 1.09001 * 109.46905 * 179.97438 * 14 13 12 44 44 H 1.08991 * 109.47282 * 300.00376 * 14 13 12 45 45 H 1.09008 * 109.46679 * 60.00809 * 14 13 12 46 46 H 1.08999 * 109.47339 * 308.58745 * 15 13 12 47 47 H 1.09000 * 109.46911 * 68.58544 * 15 13 12 48 48 H 1.08994 * 109.47302 * 188.58698 * 15 13 12 49 49 H 1.09008 * 109.47057 * 59.99665 * 16 13 12 50 50 H 1.08997 * 109.46692 * 299.99823 * 16 13 12 51 51 H 0.97001 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4443 1.3615 -0.4912 5 1 4.0302 0.6729 0.1175 6 6 4.0319 2.7710 -0.3791 7 6 5.4611 2.7650 -0.9283 8 6 5.4433 2.2749 -2.3780 9 7 4.8734 0.9226 -2.4319 10 6 4.9673 0.3654 -3.7879 11 6 3.4850 0.9122 -1.9537 12 6 1.9953 -0.7659 1.1376 13 6 2.0763 -2.2468 0.7617 14 6 3.0925 -2.4317 -0.3670 15 6 0.7018 -2.7303 0.2948 16 6 2.5154 -3.0594 1.9815 17 6 2.5946 -4.5181 1.6114 18 1 2.3560 -4.8339 0.6065 19 6 2.9776 -5.4486 2.5539 20 7 3.2686 -5.0639 3.7774 21 14 3.0832 -7.2557 2.0931 22 1 4.4496 -7.5614 1.5982 23 1 2.7913 -8.0891 3.2871 24 1 2.0926 -7.5536 1.0276 25 1 -0.3634 0.3551 0.9643 26 1 -0.3634 0.6575 -0.7898 27 1 -0.3633 -1.0127 -0.1745 28 1 1.3916 1.9924 -0.6619 29 1 1.9575 1.7752 1.0117 30 1 3.4227 3.4666 -0.9564 31 1 4.0447 3.0781 0.6667 32 1 6.0794 2.0989 -0.3265 33 1 5.8705 3.7744 -0.8903 34 1 6.4612 2.2557 -2.7674 35 1 4.8361 2.9493 -2.9817 36 1 4.3588 0.9610 -4.4684 37 1 6.0061 0.3851 -4.1176 38 1 4.6069 -0.6633 -3.7837 39 1 3.0805 -0.0968 -2.0349 40 1 2.8870 1.5929 -2.5595 41 1 1.3334 -0.6443 1.9950 42 1 2.9904 -0.4008 1.3922 43 1 3.1504 -3.4868 -0.6344 44 1 2.7796 -1.8528 -1.2359 45 1 4.0717 -2.0873 -0.0343 46 1 -0.0496 -2.4605 1.0368 47 1 0.4562 -2.2614 -0.6581 48 1 0.7197 -3.8133 0.1730 49 1 1.7914 -2.9277 2.7856 50 1 3.4946 -2.7149 2.3141 51 1 3.5377 -5.7187 4.4406 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092253993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -8.919974 kcal Electronic energy + Delta-G solvation = -24286.496845 eV Core-core repulsion = 21220.109025 eV Total energy + Delta-G solvation = -3066.387820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.42488 -37.92601 -35.16986 -33.48197 -32.14451 -31.20064 -27.56711 -27.09091 -26.74185 -26.02041 -25.68088 -23.37420 -22.78183 -22.15556 -20.52512 -19.59296 -17.83521 -16.15549 -15.82784 -15.39061 -15.17691 -14.84620 -14.61198 -14.41256 -14.12551 -14.07115 -13.35084 -12.94149 -12.91149 -12.68050 -12.40991 -12.19840 -12.18749 -11.96726 -11.92437 -11.83457 -11.43102 -11.17255 -11.00701 -10.83687 -10.69646 -10.62369 -10.50577 -10.38311 -10.24428 -10.19965 -10.12976 -9.87238 -9.49538 -8.86373 -8.77331 -8.26604 -8.25450 -7.87252 -5.90311 -3.89699 3.37481 3.43821 3.46681 3.96008 4.22847 4.54555 4.80513 4.84661 4.96582 5.05475 5.28700 5.38651 5.43268 5.45014 5.45648 5.49720 5.56797 5.63846 5.70597 5.73508 5.76759 5.83212 5.88201 5.88718 5.91544 5.99043 6.05623 6.11604 6.13769 6.19873 6.31997 6.39244 6.47796 6.52749 6.67454 6.81285 6.91904 6.96556 7.13415 7.16989 7.30799 7.34400 7.37708 7.50034 7.58364 7.78700 7.94570 8.10832 8.56078 9.15800 9.72657 11.21476 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.004318 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.594300 B = 6483.031216 C = 7009.589532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.533 5.533 3 C 0.060 3.940 4 C -0.079 4.079 5 H 0.085 0.915 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.056 3.944 9 N -0.543 5.543 10 C 0.028 3.972 11 C 0.071 3.929 12 C 0.065 3.935 13 C -0.050 4.050 14 C -0.113 4.113 15 C -0.130 4.130 16 C 0.033 3.967 17 C -0.503 4.503 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.886 3.114 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.275 1.275 25 H 0.018 0.982 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.021 0.979 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.046 0.954 48 H 0.060 0.940 49 H 0.010 0.990 50 H 0.013 0.987 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 16.388 -11.649 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.256 5.256 3 C -0.069 4.069 4 C -0.098 4.098 5 H 0.103 0.897 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.072 4.072 9 N -0.267 5.267 10 C -0.120 4.120 11 C -0.056 4.056 12 C -0.062 4.062 13 C -0.050 4.050 14 C -0.170 4.170 15 C -0.187 4.187 16 C -0.005 4.005 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.714 3.286 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.079 0.921 49 H 0.029 0.971 50 H 0.032 0.968 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.249 15.794 -11.606 19.602 hybrid contribution -0.641 -0.058 0.172 0.666 sum -0.392 15.736 -11.434 19.455 Atomic orbital electron populations 1.22893 0.88124 1.03864 0.99129 1.61954 1.07090 1.11938 1.44640 1.22129 0.95365 0.90342 0.99036 1.21172 0.95556 0.96277 0.96792 0.89717 1.21617 0.96048 0.96957 1.00830 1.21557 0.97265 1.00594 0.95949 1.22073 0.99266 0.89072 0.96797 1.61875 1.20225 1.21311 1.23284 1.22317 1.01159 1.00167 0.88395 1.22094 0.86883 1.02351 0.94300 1.22396 0.98739 0.95286 0.89809 1.20529 0.95153 0.91439 0.97919 1.21612 0.97584 1.00699 0.97120 1.21993 0.96372 1.01691 0.98635 1.19127 0.96026 0.94011 0.91296 1.21245 1.44304 0.92011 0.96598 0.92297 1.25006 0.95871 0.98611 0.95106 1.69969 1.47065 1.33852 1.02983 0.86688 0.78311 0.85739 0.77817 1.20811 1.21468 1.19961 0.96372 0.92777 0.89065 0.91846 0.94940 0.92636 0.91957 0.90921 0.91891 0.91227 0.95519 0.96229 0.91777 0.91028 0.88747 0.96078 0.95062 0.91755 0.92972 0.93903 0.94299 0.94575 0.93562 0.92089 0.97117 0.96845 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 8.85 60.06 0.53 0.64 16 2 N -0.53 -7.72 3.27 -242.93 -0.80 -8.51 16 3 C 0.06 0.75 4.31 -3.83 -0.02 0.74 16 4 C -0.08 -0.98 2.38 -90.54 -0.22 -1.20 16 5 H 0.08 1.27 6.77 -51.93 -0.35 0.92 16 6 C -0.12 -1.22 5.29 -26.61 -0.14 -1.36 16 7 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 8 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 9 N -0.54 -6.70 4.91 -242.95 -1.19 -7.89 16 10 C 0.03 0.30 9.59 60.07 0.58 0.88 16 11 C 0.07 0.90 4.62 -3.83 -0.02 0.88 16 12 C 0.06 1.13 3.98 -3.82 -0.02 1.12 16 13 C -0.05 -1.00 0.60 -154.51 -0.09 -1.10 16 14 C -0.11 -2.21 8.10 37.16 0.30 -1.91 16 15 C -0.13 -2.47 6.61 37.16 0.25 -2.22 16 16 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 17 C -0.50 -13.90 7.53 -34.44 -0.26 -14.16 16 18 H 0.06 1.59 5.72 -52.48 -0.30 1.29 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 25 H 0.02 0.24 7.91 -51.93 -0.41 -0.17 16 26 H 0.05 0.62 7.83 -51.93 -0.41 0.21 16 27 H 0.09 1.28 4.13 -51.93 -0.21 1.06 16 28 H 0.06 0.73 7.73 -51.93 -0.40 0.32 16 29 H 0.03 0.41 8.00 -51.93 -0.42 0.00 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.37 6.07 -51.92 -0.32 1.05 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.03 0.57 7.70 -51.93 -0.40 0.17 16 42 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 43 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 44 H 0.04 0.75 6.05 -51.93 -0.31 0.44 16 45 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 46 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 47 H 0.05 0.78 6.08 -51.93 -0.32 0.46 16 48 H 0.06 1.28 6.38 -51.93 -0.33 0.95 16 49 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 50 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -29.14 370.31 -10.06 -39.21 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -9.87 Total: -2.50 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 0.50 Total: -16.28 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -1.25 Total: -42.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.14 -10.06 -39.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092253993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.287 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds