Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46902 * 111.00248 * 2 1 4 4 C 1.52996 * 109.47309 * 199.91073 * 3 2 1 5 5 H 1.08996 * 109.50434 * 304.89736 * 4 3 2 6 6 C 1.53121 * 109.50468 * 184.77692 * 4 3 2 7 7 C 1.53114 * 109.16133 * 182.40554 * 6 4 3 8 8 C 1.53040 * 109.28221 * 57.65644 * 7 6 4 9 9 N 1.46848 * 109.52121 * 300.82100 * 8 7 6 10 10 C 1.46902 * 110.99829 * 185.83490 * 9 8 7 11 11 C 1.46845 * 111.19550 * 61.74035 * 9 8 7 12 12 C 1.46899 * 111.00032 * 123.95054 * 2 1 3 13 13 C 1.53000 * 109.47222 * 85.66458 * 12 2 1 14 14 C 1.52995 * 109.47315 * 64.58781 * 13 12 2 15 15 C 1.53004 * 109.46866 * 304.58973 * 13 12 2 16 16 C 1.53001 * 109.47357 * 184.59379 * 13 12 2 17 17 C 1.50697 * 109.47391 * 179.97438 * 16 13 12 18 18 H 1.08004 * 119.99685 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00239 * 179.72340 * 17 16 13 20 20 N 1.31512 * 119.99820 * 0.27425 * 19 17 16 21 21 Si 1.86792 * 120.00101 * 180.27813 * 19 17 16 22 22 H 1.48508 * 109.47416 * 90.00170 * 21 19 17 23 23 H 1.48506 * 109.47452 * 209.99944 * 21 19 17 24 24 H 1.48499 * 109.47291 * 329.99879 * 21 19 17 25 25 H 1.09000 * 109.47657 * 290.21815 * 1 2 3 26 26 H 1.08998 * 109.47434 * 50.22446 * 1 2 3 27 27 H 1.09000 * 109.47213 * 170.22112 * 1 2 3 28 28 H 1.09004 * 109.46778 * 319.90681 * 3 2 1 29 29 H 1.08999 * 109.47308 * 79.90745 * 3 2 1 30 30 H 1.09002 * 109.52499 * 302.31400 * 6 4 3 31 31 H 1.09002 * 109.51973 * 62.49824 * 6 4 3 32 32 H 1.09001 * 109.50452 * 297.71015 * 7 6 4 33 33 H 1.09001 * 109.53797 * 177.62339 * 7 6 4 34 34 H 1.08998 * 109.46372 * 180.80629 * 8 7 6 35 35 H 1.08997 * 109.44841 * 60.83262 * 8 7 6 36 36 H 1.09001 * 109.47218 * 295.79353 * 10 9 8 37 37 H 1.08999 * 109.46898 * 55.79096 * 10 9 8 38 38 H 1.09002 * 109.46999 * 175.78861 * 10 9 8 39 39 H 1.09008 * 109.46070 * 178.24121 * 11 9 8 40 40 H 1.09001 * 109.46629 * 58.27375 * 11 9 8 41 41 H 1.08997 * 109.47308 * 325.66142 * 12 2 1 42 42 H 1.09003 * 109.47511 * 205.66001 * 12 2 1 43 43 H 1.09001 * 109.46905 * 179.97438 * 14 13 12 44 44 H 1.08991 * 109.47282 * 300.00376 * 14 13 12 45 45 H 1.09008 * 109.46679 * 60.00809 * 14 13 12 46 46 H 1.08999 * 109.47339 * 308.58745 * 15 13 12 47 47 H 1.09000 * 109.46911 * 68.58544 * 15 13 12 48 48 H 1.08994 * 109.47302 * 188.58698 * 15 13 12 49 49 H 1.09008 * 109.47057 * 59.99665 * 16 13 12 50 50 H 1.08997 * 109.46692 * 299.99823 * 16 13 12 51 51 H 0.97001 * 120.00012 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4443 1.3615 -0.4912 5 1 4.0302 0.6729 0.1175 6 6 4.0319 2.7710 -0.3791 7 6 5.4611 2.7650 -0.9283 8 6 5.4433 2.2749 -2.3780 9 7 4.8734 0.9226 -2.4319 10 6 4.9673 0.3654 -3.7879 11 6 3.4850 0.9122 -1.9537 12 6 1.9953 -0.7659 1.1376 13 6 2.0763 -2.2468 0.7617 14 6 3.0925 -2.4317 -0.3670 15 6 0.7018 -2.7303 0.2948 16 6 2.5154 -3.0594 1.9815 17 6 2.5946 -4.5181 1.6114 18 1 2.3560 -4.8339 0.6065 19 6 2.9776 -5.4486 2.5539 20 7 3.2686 -5.0639 3.7774 21 14 3.0832 -7.2557 2.0931 22 1 4.4496 -7.5614 1.5982 23 1 2.7913 -8.0891 3.2871 24 1 2.0926 -7.5536 1.0276 25 1 -0.3634 0.3551 0.9643 26 1 -0.3634 0.6575 -0.7898 27 1 -0.3633 -1.0127 -0.1745 28 1 1.3916 1.9924 -0.6619 29 1 1.9575 1.7752 1.0117 30 1 3.4227 3.4666 -0.9564 31 1 4.0447 3.0781 0.6667 32 1 6.0794 2.0989 -0.3265 33 1 5.8705 3.7744 -0.8903 34 1 6.4612 2.2557 -2.7674 35 1 4.8361 2.9493 -2.9817 36 1 4.3588 0.9610 -4.4684 37 1 6.0061 0.3851 -4.1176 38 1 4.6069 -0.6633 -3.7837 39 1 3.0805 -0.0968 -2.0349 40 1 2.8870 1.5929 -2.5595 41 1 1.3334 -0.6443 1.9950 42 1 2.9904 -0.4008 1.3922 43 1 3.1504 -3.4868 -0.6344 44 1 2.7796 -1.8528 -1.2359 45 1 4.0717 -2.0873 -0.0343 46 1 -0.0496 -2.4605 1.0368 47 1 0.4562 -2.2614 -0.6581 48 1 0.7197 -3.8133 0.1730 49 1 1.7914 -2.9277 2.7856 50 1 3.4946 -2.7149 2.3141 51 1 3.5377 -5.7187 4.4406 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092253993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -25.657203 kcal Electronic energy + Delta-G solvation = -24287.222626 eV Core-core repulsion = 21220.109025 eV Total energy + Delta-G solvation = -3067.113600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48330 -39.20716 -36.63084 -34.65568 -34.01230 -32.19217 -29.08820 -28.87860 -27.64984 -27.54671 -26.86516 -25.15225 -23.86622 -23.26116 -21.63258 -20.56326 -19.48386 -18.29643 -16.84888 -16.66009 -16.33356 -16.23856 -15.90794 -15.60118 -15.22992 -15.20563 -14.77851 -14.40465 -14.11811 -13.96169 -13.83682 -13.60832 -13.45777 -13.12577 -13.07577 -12.95379 -12.89741 -12.59570 -12.45816 -12.33732 -12.23124 -12.10059 -11.96905 -11.84305 -11.72357 -11.41714 -11.23984 -11.18099 -11.10524 -10.79493 -10.57622 -10.48139 -9.14914 -9.09188 -8.11866 -6.18480 1.41393 1.42199 1.52674 2.45212 3.08046 3.09834 3.21959 3.92354 3.94534 4.02835 4.14943 4.18631 4.27899 4.41294 4.49010 4.49748 4.54135 4.58897 4.61832 4.67368 4.71851 4.75603 4.80327 4.87613 4.91304 4.92350 4.98113 5.03592 5.06980 5.09040 5.11015 5.13436 5.18038 5.23305 5.28836 5.32719 5.45056 5.55223 5.56355 5.60526 5.65377 5.72689 5.93015 5.97091 6.18848 6.26161 6.29892 6.34856 6.41771 6.96475 7.48513 9.00602 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.004318 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.594300 B = 6483.031216 C = 7009.589532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.533 5.533 3 C 0.063 3.937 4 C -0.075 4.075 5 H 0.052 0.948 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.056 3.944 9 N -0.565 5.565 10 C 0.029 3.971 11 C 0.079 3.921 12 C 0.079 3.921 13 C -0.046 4.046 14 C -0.098 4.098 15 C -0.120 4.120 16 C 0.041 3.959 17 C -0.511 4.511 18 H 0.065 0.935 19 C -0.004 4.004 20 N -0.939 5.939 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.017 0.983 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.020 0.980 42 H 0.054 0.946 43 H 0.034 0.966 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.037 0.963 47 H 0.074 0.926 48 H 0.038 0.962 49 H -0.019 1.019 50 H -0.020 1.020 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 17.565 -13.786 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.256 5.256 3 C -0.065 4.065 4 C -0.095 4.095 5 H 0.071 0.929 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.071 4.071 9 N -0.290 5.290 10 C -0.119 4.119 11 C -0.049 4.049 12 C -0.049 4.049 13 C -0.047 4.047 14 C -0.155 4.155 15 C -0.176 4.176 16 C 0.003 3.997 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.201 4.201 20 N -0.580 5.580 21 Si 0.780 3.220 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.186 1.186 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.000 1.000 50 H -0.001 1.001 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.417 16.982 -13.765 21.864 hybrid contribution -0.416 -0.369 0.842 1.009 sum -0.833 16.613 -12.923 21.063 Atomic orbital electron populations 1.22914 0.86942 1.04067 1.00115 1.61884 1.08110 1.13083 1.42568 1.22174 0.95600 0.89195 0.99548 1.21109 0.95184 0.96950 0.96241 0.92941 1.21587 0.96376 0.95704 1.01347 1.21564 0.96809 1.01381 0.95501 1.22117 0.99741 0.88226 0.97048 1.61867 1.20062 1.22729 1.24303 1.22317 1.01974 0.99706 0.87915 1.21938 0.87339 1.01240 0.94355 1.22065 0.98299 0.93954 0.90599 1.20396 0.96035 0.92601 0.95662 1.21455 0.96736 0.99736 0.97565 1.21902 0.95364 1.00301 1.00072 1.19003 0.93488 0.94421 0.92789 1.21608 1.43475 0.93058 0.96778 0.91704 1.25905 0.95635 1.03502 0.95010 1.70114 1.48293 1.35439 1.04173 0.85597 0.78671 0.79939 0.77774 1.20188 1.21196 1.18628 0.96393 0.90150 0.89825 0.89601 0.95038 0.91122 0.91749 0.92719 0.89753 0.90429 0.94602 0.95257 0.90794 0.91959 0.90809 0.95194 0.96140 0.92773 0.94729 0.91543 0.95697 0.94412 0.90717 0.94293 1.00041 1.00133 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.85 127.69 1.13 1.30 16 2 N -0.53 -14.67 3.27 -922.49 -3.02 -17.69 16 3 C 0.06 1.46 4.31 86.30 0.37 1.83 16 4 C -0.08 -1.80 2.38 -10.74 -0.03 -1.83 16 5 H 0.05 1.60 6.77 -2.39 -0.02 1.59 16 6 C -0.11 -2.13 5.29 30.67 0.16 -1.97 16 7 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 8 C 0.06 1.06 5.46 86.33 0.47 1.53 16 9 N -0.56 -13.18 4.91 -922.56 -4.53 -17.71 16 10 C 0.03 0.58 9.59 127.69 1.22 1.80 16 11 C 0.08 1.87 4.62 86.33 0.40 2.27 16 12 C 0.08 2.79 3.98 86.30 0.34 3.13 16 13 C -0.05 -1.90 0.60 -52.18 -0.03 -1.93 16 14 C -0.10 -3.86 8.10 71.98 0.58 -3.28 16 15 C -0.12 -4.48 6.61 71.98 0.48 -4.00 16 16 C 0.04 2.16 4.04 29.85 0.12 2.28 16 17 C -0.51 -28.94 7.53 25.60 0.19 -28.74 16 18 H 0.06 3.54 5.72 -2.91 -0.02 3.52 16 19 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 20 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 21 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 24 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 25 H 0.02 0.43 7.91 -2.39 -0.02 0.42 16 26 H 0.08 1.54 7.83 -2.39 -0.02 1.53 16 27 H 0.08 2.14 4.13 -2.39 -0.01 2.13 16 28 H 0.09 1.65 7.73 -2.38 -0.02 1.64 16 29 H 0.03 0.75 8.00 -2.39 -0.02 0.73 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 2.04 6.07 -2.38 -0.01 2.03 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.02 0.76 7.70 -2.39 -0.02 0.74 16 42 H 0.05 2.01 6.46 -2.39 -0.02 2.00 16 43 H 0.03 1.46 6.62 -2.39 -0.02 1.44 16 44 H 0.07 2.30 6.05 -2.39 -0.01 2.28 16 45 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.04 1.37 7.53 -2.39 -0.02 1.36 16 47 H 0.07 2.37 6.08 -2.39 -0.01 2.36 16 48 H 0.04 1.61 6.38 -2.39 -0.02 1.60 16 49 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 50 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 51 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -64.23 370.31 1.68 -62.55 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.85 Total: 13.00 kcal Atomic # 6 Polarization: -35.36 SS G_CDS: 6.07 Total: -29.29 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -7.27 Total: -93.55 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.23 1.68 -62.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092253993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -64.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds