Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00184 * 2 1 4 4 C 1.52999 * 109.47202 * 293.95348 * 3 2 1 5 5 H 1.09001 * 109.50393 * 54.99685 * 4 3 2 6 6 C 1.53124 * 109.50474 * 175.07452 * 4 3 2 7 7 C 1.53115 * 109.16077 * 177.59592 * 6 4 3 8 8 C 1.53038 * 109.27921 * 302.34518 * 7 6 4 9 9 N 1.46846 * 109.52091 * 59.18106 * 8 7 6 10 10 C 1.46901 * 111.00012 * 174.16257 * 9 8 7 11 11 C 1.46847 * 111.23606 * 298.27571 * 9 8 7 12 12 C 1.46901 * 111.00145 * 123.95530 * 2 1 3 13 13 C 1.52999 * 109.47085 * 87.97318 * 12 2 1 14 14 C 1.53003 * 109.47337 * 305.16961 * 13 12 2 15 15 C 1.52998 * 109.46964 * 65.17356 * 13 12 2 16 16 C 1.53000 * 109.46957 * 185.17061 * 13 12 2 17 17 C 1.50700 * 109.47129 * 180.02562 * 16 13 12 18 18 H 1.08005 * 120.00044 * 359.97438 * 17 16 13 19 19 C 1.37878 * 120.00457 * 180.02562 * 17 16 13 20 20 N 1.31522 * 119.99393 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00569 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47125 * 89.99750 * 21 19 17 23 23 H 1.48497 * 109.47169 * 210.00050 * 21 19 17 24 24 H 1.48506 * 109.46641 * 329.99662 * 21 19 17 25 25 H 1.08996 * 109.47180 * 301.87109 * 1 2 3 26 26 H 1.09004 * 109.46944 * 61.87134 * 1 2 3 27 27 H 1.09002 * 109.47264 * 181.86516 * 1 2 3 28 28 H 1.09006 * 109.47124 * 53.95209 * 3 2 1 29 29 H 1.08998 * 109.47216 * 173.94826 * 3 2 1 30 30 H 1.09005 * 109.52272 * 297.50493 * 6 4 3 31 31 H 1.09005 * 109.51900 * 57.62693 * 6 4 3 32 32 H 1.09001 * 109.50339 * 62.28856 * 7 6 4 33 33 H 1.09004 * 109.50012 * 182.40806 * 7 6 4 34 34 H 1.09003 * 109.46051 * 179.19330 * 8 7 6 35 35 H 1.09003 * 109.46360 * 299.17976 * 8 7 6 36 36 H 1.08997 * 109.47281 * 63.95283 * 10 9 8 37 37 H 1.09001 * 109.47079 * 183.95702 * 10 9 8 38 38 H 1.09002 * 109.46894 * 303.94837 * 10 9 8 39 39 H 1.08999 * 109.43137 * 301.69375 * 11 9 8 40 40 H 1.08994 * 109.50193 * 181.71757 * 11 9 8 41 41 H 1.08998 * 109.46905 * 327.97760 * 12 2 1 42 42 H 1.08996 * 109.47399 * 207.97316 * 12 2 1 43 43 H 1.08995 * 109.46787 * 185.98243 * 14 13 12 44 44 H 1.08997 * 109.47090 * 65.97858 * 14 13 12 45 45 H 1.09002 * 109.47055 * 305.98118 * 14 13 12 46 46 H 1.08998 * 109.46996 * 299.99180 * 15 13 12 47 47 H 1.08996 * 109.47669 * 60.00029 * 15 13 12 48 48 H 1.09001 * 109.46890 * 180.02562 * 15 13 12 49 49 H 1.09002 * 109.47577 * 299.99857 * 16 13 12 50 50 H 1.08997 * 109.47256 * 60.00235 * 16 13 12 51 51 H 0.97001 * 119.99283 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3182 5 1 0.5533 2.0061 -1.4697 6 6 2.0718 3.5232 -1.2704 7 6 1.7584 4.1862 -2.6145 8 6 2.4680 3.4203 -3.7333 9 7 2.0123 2.0243 -3.7378 10 6 2.5676 1.2929 -4.8844 11 6 2.3439 1.3525 -2.4748 12 6 1.9954 -0.7660 1.1376 13 6 2.1306 -2.2379 0.7425 14 6 0.7856 -2.7530 0.2260 15 6 3.1858 -2.3760 -0.3568 16 6 2.5556 -3.0566 1.9631 17 6 2.6893 -4.5063 1.5738 18 1 2.4906 -4.8131 0.5575 19 6 3.0643 -5.4413 2.5153 20 7 3.3058 -5.0677 3.7530 21 14 3.2294 -7.2383 2.0329 22 1 4.6182 -7.5034 1.5789 23 1 2.9196 -8.0959 3.2050 24 1 2.2816 -7.5442 0.9314 25 1 -0.3633 0.5426 0.8727 26 1 -0.3633 0.4845 -0.9063 27 1 -0.3634 -1.0271 0.0334 28 1 1.5611 1.9274 0.8309 29 1 3.0797 1.3443 0.1083 30 1 1.5336 4.0394 -0.4752 31 1 3.1435 3.5755 -1.0783 32 1 0.6823 4.1684 -2.7869 33 1 2.1084 5.2185 -2.6014 34 1 2.2353 3.8813 -4.6932 35 1 3.5449 3.4501 -3.5675 36 1 3.6527 1.2446 -4.7937 37 1 2.1592 0.2825 -4.9032 38 1 2.3028 1.8090 -5.8073 39 1 3.4215 1.3916 -2.3153 40 1 2.0212 0.3124 -2.5202 41 1 1.3122 -0.6779 1.9823 42 1 2.9729 -0.3740 1.4184 43 1 0.8527 -3.8257 0.0449 44 1 0.5337 -2.2425 -0.7035 45 1 0.0122 -2.5576 0.9689 46 1 2.8830 -1.7928 -1.2264 47 1 4.1440 -2.0092 0.0111 48 1 3.2817 -3.4246 -0.6386 49 1 3.5138 -2.6898 2.3310 50 1 1.8039 -2.9582 2.7462 51 1 3.5693 -5.7255 4.4154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092253994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -11.153429 kcal Electronic energy + Delta-G solvation = -23882.682019 eV Core-core repulsion = 20816.197350 eV Total energy + Delta-G solvation = -3066.484670 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.48051 -37.98388 -35.32331 -33.51002 -32.21970 -31.07446 -27.73236 -27.06067 -26.83839 -26.09127 -25.69435 -23.54811 -22.89081 -22.05658 -20.57630 -19.67521 -17.78830 -16.17396 -15.86076 -15.64712 -15.25992 -14.89628 -14.62307 -14.55534 -14.27694 -13.86653 -13.37668 -13.02095 -12.94824 -12.73530 -12.60210 -12.28517 -12.20789 -12.02920 -11.93655 -11.76191 -11.53412 -11.18189 -11.08408 -10.86994 -10.71730 -10.60032 -10.55898 -10.44378 -10.35074 -10.33981 -10.24892 -9.94044 -9.53406 -8.90494 -8.80301 -8.40064 -8.28337 -7.87071 -5.93140 -3.92750 3.35343 3.41819 3.44823 3.84833 4.20509 4.52167 4.70307 4.74550 4.87858 4.96421 5.19787 5.30625 5.35220 5.40728 5.42629 5.46550 5.50989 5.59579 5.66262 5.69277 5.73611 5.77665 5.80638 5.82245 5.86859 5.91031 5.99360 6.03280 6.11162 6.22618 6.27591 6.33701 6.39872 6.41073 6.66235 6.74143 6.86499 6.90435 7.00919 7.03646 7.26948 7.29283 7.33808 7.47411 7.56323 7.75309 7.90787 8.07926 8.53050 9.12861 9.69787 11.18606 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.003494 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.550447 B = 8011.995263 C = 8468.144027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.532 5.532 3 C 0.059 3.941 4 C -0.079 4.079 5 H 0.079 0.921 6 C -0.118 4.118 7 C -0.114 4.114 8 C 0.055 3.945 9 N -0.547 5.547 10 C 0.027 3.973 11 C 0.070 3.930 12 C 0.065 3.935 13 C -0.050 4.050 14 C -0.128 4.128 15 C -0.115 4.115 16 C 0.032 3.968 17 C -0.504 4.504 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.015 0.985 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.041 0.959 47 H 0.035 0.965 48 H 0.054 0.946 49 H 0.012 0.988 50 H 0.012 0.988 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 17.553 -12.908 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.255 5.255 3 C -0.069 4.069 4 C -0.098 4.098 5 H 0.097 0.903 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.073 4.073 9 N -0.271 5.271 10 C -0.122 4.122 11 C -0.058 4.058 12 C -0.062 4.062 13 C -0.051 4.051 14 C -0.185 4.185 15 C -0.173 4.173 16 C -0.005 4.005 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.031 0.969 50 H 0.030 0.970 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.564 17.252 -13.216 22.023 hybrid contribution 0.828 -0.605 0.811 1.307 sum -2.737 16.648 -12.405 20.941 Atomic orbital electron populations 1.22874 0.88142 1.03529 0.99592 1.61942 1.07397 1.11815 1.44346 1.22191 0.99949 0.89257 0.95539 1.21187 1.01147 0.93357 0.94081 0.90300 1.21630 1.01083 0.95720 0.97155 1.21551 1.01310 0.98083 0.94290 1.22081 0.96896 0.89304 0.99063 1.61919 1.59778 1.01990 1.03401 1.22321 0.97210 0.99290 0.93340 1.22061 0.97215 0.99064 0.87419 1.22338 0.98490 0.95311 0.90100 1.20537 0.95203 0.91540 0.97791 1.21924 0.96342 1.01433 0.98799 1.21597 0.97280 1.00949 0.97426 1.19135 0.96048 0.93991 0.91326 1.21252 1.44843 0.92463 0.95701 0.92272 1.25020 0.95898 0.98666 0.95066 1.69975 1.47708 1.33907 1.02285 0.86674 0.78329 0.85549 0.77935 1.20827 1.21434 1.19917 0.96598 0.91977 0.89329 0.95224 0.91185 0.91973 0.92288 0.91213 0.91796 0.91229 0.95228 0.95865 0.91116 0.91807 0.95363 0.89083 0.94807 0.92155 0.92201 0.93507 0.94464 0.93963 0.94625 0.92744 0.96924 0.97010 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 8.46 60.06 0.51 0.60 16 2 N -0.53 -7.70 3.30 -242.92 -0.80 -8.50 16 3 C 0.06 0.75 4.27 -3.83 -0.02 0.73 16 4 C -0.08 -0.87 2.27 -90.54 -0.21 -1.08 16 5 H 0.08 0.94 6.38 -51.93 -0.33 0.61 16 6 C -0.12 -1.12 5.29 -26.61 -0.14 -1.26 16 7 C -0.11 -0.99 6.09 -26.65 -0.16 -1.16 16 8 C 0.05 0.51 5.47 -3.83 -0.02 0.49 16 9 N -0.55 -5.99 4.91 -242.96 -1.19 -7.18 16 10 C 0.03 0.26 9.59 60.07 0.58 0.83 16 11 C 0.07 0.83 4.63 -3.83 -0.02 0.81 16 12 C 0.06 1.13 4.26 -3.82 -0.02 1.11 16 13 C -0.05 -1.00 0.61 -154.51 -0.09 -1.10 16 14 C -0.13 -2.43 6.61 37.16 0.25 -2.18 16 15 C -0.12 -2.24 8.11 37.16 0.30 -1.93 16 16 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 17 C -0.50 -13.87 7.57 -34.44 -0.26 -14.13 16 18 H 0.06 1.59 5.70 -52.48 -0.30 1.29 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.02 0.21 8.13 -51.93 -0.42 -0.21 16 26 H 0.06 0.76 6.46 -51.93 -0.34 0.43 16 27 H 0.09 1.27 4.16 -51.93 -0.22 1.06 16 28 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.07 0.91 7.79 -51.93 -0.40 0.50 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 1.23 7.76 -51.93 -0.40 0.83 16 41 H 0.03 0.61 7.81 -51.93 -0.41 0.20 16 42 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 43 H 0.06 1.25 6.44 -51.93 -0.33 0.91 16 44 H 0.05 0.79 6.28 -51.93 -0.33 0.46 16 45 H 0.04 0.69 7.37 -51.93 -0.38 0.31 16 46 H 0.04 0.74 7.76 -51.93 -0.40 0.33 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 49 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -28.92 373.42 -10.21 -39.13 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -10.04 Total: -3.36 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 0.49 Total: -16.12 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -1.26 Total: -41.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.92 -10.21 -39.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092253994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.972 kcal (2) G-P(sol) polarization free energy of solvation -28.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds