Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21284 * 119.99899 * 2 1 4 4 N 1.34777 * 119.99546 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99420 * 179.97438 * 4 2 1 6 6 C 1.53121 * 109.51879 * 154.99967 * 5 4 2 7 7 C 1.53035 * 109.27763 * 177.62346 * 6 5 4 8 8 N 1.46851 * 109.52516 * 300.82106 * 7 6 5 9 9 C 1.46895 * 111.00368 * 185.84095 * 8 7 6 10 10 C 1.53002 * 109.47415 * 86.77622 * 9 8 7 11 11 C 1.53005 * 109.46767 * 54.59091 * 10 9 8 12 12 C 1.53000 * 109.46963 * 294.59155 * 10 9 8 13 13 C 1.52994 * 109.47174 * 174.59123 * 10 9 8 14 14 C 1.50699 * 109.47070 * 180.02562 * 13 10 9 15 15 H 1.08002 * 120.00008 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99926 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00365 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00038 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46927 * 59.99931 * 18 16 14 20 20 H 1.48496 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46852 * 300.00368 * 18 16 14 22 22 C 1.46847 * 111.19700 * 61.74119 * 8 7 6 23 23 C 1.53040 * 109.52366 * 298.25842 * 22 8 7 24 24 H 1.09003 * 109.46872 * 270.00347 * 1 2 3 25 25 H 1.09002 * 109.46926 * 29.99869 * 1 2 3 26 26 H 1.08991 * 109.47161 * 149.99679 * 1 2 3 27 27 H 0.96998 * 120.00449 * 359.97438 * 4 2 1 28 28 H 1.09004 * 109.52646 * 34.87566 * 5 4 2 29 29 H 1.09000 * 109.50702 * 57.68222 * 6 5 4 30 30 H 1.09004 * 109.50432 * 297.56014 * 6 5 4 31 31 H 1.09004 * 109.46714 * 180.80410 * 7 6 5 32 32 H 1.09007 * 109.45833 * 60.83208 * 7 6 5 33 33 H 1.09009 * 109.47291 * 326.77743 * 9 8 7 34 34 H 1.08997 * 109.47540 * 206.78063 * 9 8 7 35 35 H 1.09000 * 109.46953 * 185.51858 * 11 10 9 36 36 H 1.08992 * 109.46798 * 305.51770 * 11 10 9 37 37 H 1.08997 * 109.46700 * 65.51859 * 11 10 9 38 38 H 1.08991 * 109.47282 * 313.20983 * 12 10 9 39 39 H 1.09000 * 109.47104 * 73.21680 * 12 10 9 40 40 H 1.09009 * 109.46698 * 193.21174 * 12 10 9 41 41 H 1.09001 * 109.47280 * 60.00013 * 13 10 9 42 42 H 1.09002 * 109.47489 * 300.00031 * 13 10 9 43 43 H 0.97003 * 120.00011 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.46066 * 58.27690 * 22 8 7 45 45 H 1.08999 * 109.46051 * 178.24439 * 22 8 7 46 46 H 1.08997 * 109.50562 * 299.24285 * 23 22 8 47 47 H 1.09002 * 109.50310 * 179.11819 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1577 -2.4753 0.6084 7 6 5.6869 -2.4952 0.5509 8 7 6.1271 -2.3795 -0.8453 9 6 7.5840 -2.5339 -0.9524 10 6 7.9317 -4.0185 -1.0784 11 6 7.1580 -4.6258 -2.2504 12 6 7.5508 -4.7430 0.2142 13 6 9.4339 -4.1713 -1.3251 14 6 9.7763 -5.6336 -1.4498 15 1 8.9999 -6.3794 -1.3623 16 6 11.0804 -6.0194 -1.6766 17 7 12.0257 -5.1113 -1.7837 18 14 11.5047 -7.8320 -1.8319 19 1 10.7534 -8.4205 -2.9697 20 1 12.9627 -7.9803 -2.0712 21 1 11.1352 -8.5360 -0.5777 22 6 5.6875 -1.1095 -1.4371 23 6 4.1583 -1.0484 -1.4391 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6959 -2.0073 -0.0005 28 1 4.0104 -0.3245 0.5864 29 1 3.7614 -3.3194 0.0439 30 1 3.8317 -2.5455 1.6461 31 1 6.0541 -3.4315 0.9711 32 1 6.0828 -1.6587 1.1270 33 1 8.0594 -2.1237 -0.0613 34 1 7.9421 -2.0008 -1.8332 35 1 7.3292 -5.7018 -2.2802 36 1 6.0933 -4.4307 -2.1229 37 1 7.5005 -4.1774 -3.1830 38 1 7.9111 -4.1724 1.0702 39 1 6.4665 -4.8383 0.2714 40 1 8.0036 -5.7345 0.2219 41 1 9.9851 -3.7387 -0.4902 42 1 9.7053 -3.6552 -2.2460 43 1 12.9431 -5.3828 -1.9436 44 1 6.0835 -0.2797 -0.8517 45 1 6.0551 -1.0395 -2.4609 46 1 3.7620 -1.8700 -2.0357 47 1 3.8327 -0.0989 -1.8641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092670500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = -54.024783 kcal Electronic energy + Delta-G solvation = -23180.462571 eV Core-core repulsion = 19976.285765 eV Total energy + Delta-G solvation = -3204.176805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18413 -38.85543 -36.55608 -34.53809 -32.45520 -31.51408 -30.89729 -29.45296 -26.92969 -26.44970 -25.74873 -23.34794 -23.06235 -22.00394 -20.70511 -19.86894 -17.87474 -17.05779 -16.61607 -16.18251 -15.57093 -15.20067 -14.92987 -14.60107 -14.32334 -13.90037 -13.76475 -13.44265 -13.02172 -12.87630 -12.77154 -12.56256 -12.44244 -12.32262 -11.99540 -11.65377 -11.35955 -11.18121 -10.98279 -10.88429 -10.82958 -10.74928 -10.53559 -10.29175 -10.26949 -10.10241 -9.89216 -9.59641 -9.21564 -8.92500 -8.84048 -8.29203 -7.93449 -5.93966 -3.93878 2.41890 2.99842 3.35694 3.40468 3.42474 4.14390 4.49921 4.51063 4.69520 4.78081 4.89985 5.04414 5.06457 5.19800 5.37620 5.41496 5.41691 5.49356 5.59122 5.61438 5.66769 5.85991 5.89509 5.98365 5.99828 6.02819 6.09915 6.19162 6.31913 6.34717 6.37992 6.57395 6.74364 6.82914 6.90040 7.25606 7.26512 7.29706 7.31442 7.42777 7.51258 7.73689 7.89600 8.00983 8.06602 8.51414 9.11445 9.68595 11.17677 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046653 B = 0.003051 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.030521 B = 9173.974188 C = 9355.882887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.549 6.549 4 N -0.726 5.726 5 C 0.142 3.858 6 C -0.121 4.121 7 C 0.043 3.957 8 N -0.530 5.530 9 C 0.065 3.935 10 C -0.051 4.051 11 C -0.113 4.113 12 C -0.132 4.132 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.058 3.942 23 C -0.122 4.122 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.400 0.600 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.012 0.988 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.029 0.971 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.515 6.663 4.118 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.426 6.426 4 N -0.377 5.377 5 C 0.038 3.962 6 C -0.159 4.159 7 C -0.086 4.086 8 N -0.254 5.254 9 C -0.062 4.062 10 C -0.052 4.052 11 C -0.171 4.171 12 C -0.189 4.189 13 C -0.005 4.005 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.071 4.071 23 C -0.161 4.161 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.098 0.902 27 H 0.234 0.766 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.110 7.079 3.829 22.592 hybrid contribution 0.569 -0.691 0.327 0.953 sum -20.540 6.388 4.155 21.908 Atomic orbital electron populations 1.21889 0.91906 1.04822 1.04652 1.20827 0.90557 0.83658 0.75460 1.90731 1.70829 1.31456 1.49630 1.46221 1.07533 1.08616 1.75315 1.21088 0.78862 0.99084 0.97198 1.21860 0.96624 0.96801 1.00634 1.22464 0.93673 1.02681 0.89752 1.61950 1.14253 1.32526 1.16677 1.22332 0.84903 0.98859 1.00098 1.20553 0.98503 0.91058 0.95036 1.21566 0.98373 1.00242 0.96903 1.21975 0.98712 1.01643 0.96577 1.19139 0.87920 0.96876 0.96560 1.21197 0.92831 0.92364 1.47991 0.92341 1.25018 0.96744 0.97036 0.95821 1.69956 1.00871 1.32799 1.50185 0.86735 0.77154 0.86025 0.78530 1.20335 1.21482 1.20378 1.22064 0.94405 0.90597 1.00053 1.21934 0.95642 1.02213 0.96313 0.88980 0.88997 0.90204 0.76579 0.89947 0.90489 0.91377 0.88099 0.95359 0.94814 0.91717 0.93196 0.93446 0.94457 0.94580 0.93937 0.91586 0.97006 0.96801 0.93138 0.95255 0.90486 0.90914 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.30 36.01 0.37 -0.58 16 2 C 0.51 5.05 7.91 -10.98 -0.09 4.97 16 3 O -0.55 -8.12 16.76 5.55 0.09 -8.03 16 4 N -0.73 -6.15 5.08 -53.68 -0.27 -6.42 16 5 C 0.14 1.51 2.52 -67.81 -0.17 1.33 16 6 C -0.12 -1.20 5.57 -26.65 -0.15 -1.35 16 7 C 0.04 0.54 4.93 -3.83 -0.02 0.52 16 8 N -0.53 -7.52 3.40 -234.66 -0.80 -8.31 16 9 C 0.07 1.12 4.24 -3.83 -0.02 1.10 16 10 C -0.05 -1.00 0.61 -154.51 -0.09 -1.09 16 11 C -0.11 -2.17 7.95 37.16 0.30 -1.87 16 12 C -0.13 -2.42 6.87 37.16 0.26 -2.16 16 13 C 0.03 0.82 4.04 -27.89 -0.11 0.70 16 14 C -0.51 -13.76 7.53 -34.44 -0.26 -14.02 16 15 H 0.06 1.55 5.78 -52.49 -0.30 1.24 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.06 0.75 5.36 -3.83 -0.02 0.73 16 23 C -0.12 -1.40 5.68 -26.65 -0.15 -1.55 16 24 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.40 2.24 8.61 -40.82 -0.35 1.89 16 28 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.34 4.16 -51.93 -0.22 1.12 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.03 0.59 7.77 -51.92 -0.40 0.18 16 34 H 0.06 1.13 7.62 -51.93 -0.40 0.74 16 35 H 0.05 1.01 6.81 -51.93 -0.35 0.66 16 36 H 0.05 0.81 7.27 -51.93 -0.38 0.43 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.04 0.67 6.29 -51.93 -0.33 0.35 16 40 H 0.07 1.35 6.30 -51.92 -0.33 1.02 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 1.01 7.90 -51.93 -0.41 0.60 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.90 358.11 -8.58 -40.48 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -8.47 Total: -1.66 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.25 Total: -11.85 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.33 Total: -40.90 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.90 -8.58 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092670500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.541 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds