Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99553 * 2 1 4 4 C 1.53000 * 109.47205 * 75.85415 * 3 2 1 5 5 C 1.53119 * 109.52296 * 184.99944 * 4 3 2 6 6 C 1.53033 * 109.27791 * 182.43886 * 5 4 3 7 7 N 1.46849 * 109.52225 * 59.17653 * 6 5 4 8 8 C 1.46902 * 110.99838 * 174.15789 * 7 6 5 9 9 C 1.46843 * 111.20043 * 298.25944 * 7 6 5 10 10 C 1.53035 * 109.52173 * 61.74033 * 9 7 6 11 11 C 1.46903 * 111.00049 * 236.04943 * 2 1 3 12 12 C 1.52998 * 109.46898 * 210.67989 * 11 2 1 13 13 C 1.53003 * 109.47157 * 294.32440 * 12 11 2 14 14 C 1.52993 * 109.47012 * 54.33075 * 12 11 2 15 15 C 1.52998 * 109.46864 * 174.32841 * 12 11 2 16 16 C 1.50698 * 109.47080 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00058 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99965 * 179.97438 * 16 15 12 19 19 N 1.31520 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47244 * 89.99850 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99759 * 20 18 16 23 23 H 1.48500 * 109.47286 * 329.99749 * 20 18 16 24 24 H 1.08998 * 109.47962 * 63.98189 * 1 2 3 25 25 H 1.09005 * 109.46669 * 183.98398 * 1 2 3 26 26 H 1.09004 * 109.47477 * 303.97454 * 1 2 3 27 27 H 1.09002 * 109.46830 * 315.85400 * 3 2 1 28 28 H 1.08999 * 109.47239 * 195.85710 * 3 2 1 29 29 H 1.09004 * 109.57302 * 305.15744 * 4 3 2 30 30 H 1.08998 * 109.50165 * 62.49681 * 5 4 3 31 31 H 1.08997 * 109.53405 * 302.40177 * 5 4 3 32 32 H 1.09005 * 109.46385 * 299.16356 * 6 5 4 33 33 H 1.08997 * 109.46449 * 179.19186 * 6 5 4 34 34 H 1.08998 * 109.47261 * 60.00628 * 8 7 6 35 35 H 1.08994 * 109.47170 * 300.00377 * 8 7 6 36 36 H 1.09008 * 109.46801 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.46118 * 181.75508 * 9 7 6 38 38 H 1.08994 * 109.46368 * 301.72514 * 9 7 6 39 39 H 1.09008 * 109.50311 * 180.87575 * 10 9 7 40 40 H 1.09005 * 109.53772 * 60.78497 * 10 9 7 41 41 H 1.08997 * 109.46982 * 330.68273 * 11 2 1 42 42 H 1.09006 * 109.47085 * 90.67844 * 11 2 1 43 43 H 1.09004 * 109.46520 * 70.72608 * 13 12 11 44 44 H 1.08995 * 109.46971 * 190.72243 * 13 12 11 45 45 H 1.08993 * 109.47344 * 310.73094 * 13 12 11 46 46 H 1.08996 * 109.47851 * 65.06416 * 14 12 11 47 47 H 1.09007 * 109.47057 * 185.06282 * 14 12 11 48 48 H 1.09004 * 109.47395 * 305.05485 * 14 12 11 49 49 H 1.08997 * 109.47204 * 300.00239 * 15 12 11 50 50 H 1.09004 * 109.47422 * 60.00005 * 15 12 11 51 51 H 0.96996 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.8489 1.9740 1.3987 5 6 2.2811 3.4427 1.3711 6 6 2.1904 4.0227 2.7844 7 7 3.0586 3.2552 3.6864 8 6 3.1040 3.8678 5.0209 9 6 2.6337 1.8518 3.7658 10 6 2.7376 1.2070 2.3818 11 6 1.9954 -0.7659 -1.1376 12 6 3.3364 -1.3940 -0.7527 13 6 4.3678 -0.2891 -0.5154 14 6 3.1660 -2.2160 0.5264 15 6 3.8163 -2.3051 -1.8843 16 6 5.1374 -2.9233 -1.5054 17 1 5.5897 -2.6895 -0.5530 18 6 5.7686 -3.7876 -2.3747 19 7 6.9218 -4.3267 -2.0443 20 14 4.9866 -4.1915 -4.0224 21 1 5.4527 -3.2190 -5.0433 22 1 5.3769 -5.5646 -4.4321 23 1 3.5087 -4.1123 -3.9016 24 1 -0.3635 0.4508 -0.9234 25 1 -0.3633 -1.0253 0.0714 26 1 -0.3634 0.5743 0.8522 27 1 1.4370 1.9749 -0.7158 28 1 3.0484 1.3566 -0.2808 29 1 0.8091 1.9062 1.7185 30 1 1.6247 4.0027 0.7051 31 1 3.3084 3.5136 1.0138 32 1 1.1601 3.9647 3.1354 33 1 2.5112 5.0643 2.7707 34 1 2.0992 3.8953 5.4424 35 1 3.4926 4.8830 4.9415 36 1 3.7542 3.2797 5.6687 37 1 3.2765 1.3168 4.4649 38 1 1.6014 1.8039 4.1121 39 1 2.4074 0.1697 2.4379 40 1 3.7722 1.2415 2.0403 41 1 1.2891 -1.5521 -1.4043 42 1 2.1370 -0.1005 -1.9893 43 1 4.1256 0.2423 0.4050 44 1 5.3604 -0.7310 -0.4295 45 1 4.3518 0.4087 -1.3526 46 1 2.5001 -3.0568 0.3321 47 1 4.1375 -2.5894 0.8505 48 1 2.7392 -1.5875 1.3081 49 1 3.0815 -3.0923 -2.0534 50 1 3.9376 -1.7195 -2.7956 51 1 7.3657 -4.9350 -2.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093089407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -8.134160 kcal Electronic energy + Delta-G solvation = -24159.715943 eV Core-core repulsion = 21093.362199 eV Total energy + Delta-G solvation = -3066.353744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52701 -38.04257 -35.36190 -33.46411 -32.09122 -30.86782 -28.43577 -27.91083 -26.56149 -26.21063 -25.17242 -23.45258 -22.98411 -21.87199 -20.60926 -19.61563 -17.78558 -16.70327 -15.94004 -15.46659 -15.23808 -14.95516 -14.69333 -14.50956 -13.98163 -13.85433 -13.39616 -13.14419 -13.04160 -12.84137 -12.52291 -12.44735 -12.28802 -12.15783 -11.93078 -11.81300 -11.49010 -11.37665 -11.21754 -10.99624 -10.82343 -10.73347 -10.45754 -10.37684 -10.29124 -10.19370 -10.03084 -9.72087 -9.57664 -9.07242 -8.86220 -8.44835 -8.44610 -7.94137 -5.95227 -3.90664 3.34962 3.42631 3.46308 3.82909 4.15931 4.52385 4.75766 4.82123 4.86245 5.07437 5.21280 5.25216 5.32492 5.38167 5.40200 5.43158 5.46241 5.53834 5.61761 5.62766 5.66969 5.70313 5.74644 5.85648 5.92182 5.99974 6.00087 6.04211 6.06243 6.18264 6.25725 6.31711 6.39178 6.50668 6.63269 6.72913 6.80559 6.90763 6.95745 7.00735 7.20533 7.25508 7.27128 7.34912 7.44126 7.47137 7.59269 7.91518 8.65835 9.11659 9.68267 11.17985 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.003931 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.205652 B = 7120.977199 C = 7672.085882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.044 3.956 4 C -0.078 4.078 5 C -0.114 4.114 6 C 0.059 3.941 7 N -0.543 5.543 8 C 0.025 3.975 9 C 0.055 3.945 10 C -0.104 4.104 11 C 0.062 3.938 12 C -0.041 4.041 13 C -0.138 4.138 14 C -0.115 4.115 15 C -0.006 4.006 16 C -0.503 4.503 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.907 5.907 20 Si 0.875 3.125 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.267 1.267 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.025 0.975 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.021 0.979 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.012 0.988 50 H 0.006 0.994 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 15.883 9.639 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.084 4.084 4 C -0.098 4.098 5 C -0.152 4.152 6 C -0.069 4.069 7 N -0.268 5.268 8 C -0.123 4.123 9 C -0.073 4.073 10 C -0.141 4.141 11 C -0.065 4.065 12 C -0.041 4.041 13 C -0.195 4.195 14 C -0.173 4.173 15 C -0.043 4.043 16 C -0.541 4.541 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.206 1.206 22 H -0.216 1.216 23 H -0.192 1.192 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.031 0.969 50 H 0.024 0.976 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.051 15.533 9.806 21.969 hybrid contribution -1.499 0.093 -1.452 2.089 sum -13.550 15.626 8.354 22.306 Atomic orbital electron populations 1.22411 0.88705 1.01667 0.99512 1.61912 1.06345 1.12991 1.44139 1.22570 1.02114 0.88297 0.95433 1.21139 0.99288 0.93730 0.95594 1.21632 1.02386 0.95698 0.95481 1.22044 0.94215 0.97308 0.93290 1.61929 1.52199 1.02674 1.10006 1.22342 0.99755 1.00102 0.90097 1.22178 0.98028 0.88194 0.98890 1.21605 1.00640 0.99531 0.92373 1.22358 0.97898 0.96088 0.90158 1.20328 0.91539 0.95165 0.97111 1.22044 1.00769 0.97455 0.99191 1.21593 1.01006 0.98128 0.96532 1.19650 0.97084 0.94238 0.93372 1.21147 1.03027 1.25297 1.04675 0.90370 1.25017 0.94726 0.95903 0.97979 1.69912 1.16087 1.31822 1.36812 0.86862 0.80361 0.77486 0.85020 1.20561 1.21628 1.19196 0.96467 0.91701 0.92065 0.95659 0.88665 0.92074 0.91969 0.90842 0.95357 0.91125 0.96059 0.91603 0.91384 0.90903 0.95447 0.89881 0.90932 0.91945 0.95056 0.93027 0.91223 0.94771 0.94631 0.92629 0.93077 0.96926 0.97580 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.25 60.06 0.56 0.86 16 2 N -0.53 -7.31 2.95 -242.91 -0.72 -8.03 16 3 C 0.04 0.55 3.63 -3.82 -0.01 0.54 16 4 C -0.08 -0.87 2.31 -90.50 -0.21 -1.08 16 5 C -0.11 -1.15 5.38 -26.65 -0.14 -1.29 16 6 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 7 N -0.54 -5.81 4.91 -242.96 -1.19 -7.00 16 8 C 0.03 0.22 9.59 60.07 0.58 0.80 16 9 C 0.05 0.60 5.46 -3.84 -0.02 0.58 16 10 C -0.10 -1.25 4.72 -26.66 -0.13 -1.38 16 11 C 0.06 1.02 4.24 -3.82 -0.02 1.01 16 12 C -0.04 -0.79 0.61 -154.51 -0.09 -0.88 16 13 C -0.14 -2.57 6.81 37.16 0.25 -2.32 16 14 C -0.12 -2.20 7.97 37.15 0.30 -1.91 16 15 C -0.01 -0.13 3.11 -27.88 -0.09 -0.22 16 16 C -0.50 -13.97 8.11 -34.44 -0.28 -14.25 16 17 H 0.08 2.32 6.00 -52.49 -0.31 2.00 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 20 Si 0.87 21.95 27.47 -169.99 -4.67 17.28 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 24 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 26 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 27 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 28 H 0.10 1.34 4.27 -51.93 -0.22 1.12 16 29 H 0.06 0.68 6.73 -51.93 -0.35 0.33 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 34 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 37 H 0.07 0.78 8.09 -51.92 -0.42 0.36 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.09 6.77 -51.92 -0.35 0.74 16 40 H 0.07 0.99 6.76 -51.93 -0.35 0.64 16 41 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 42 H 0.03 0.52 7.79 -51.93 -0.40 0.11 16 43 H 0.05 0.85 4.37 -51.93 -0.23 0.62 16 44 H 0.07 1.50 6.34 -51.93 -0.33 1.17 16 45 H 0.03 0.61 7.54 -51.93 -0.39 0.21 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 1.18 6.80 -51.92 -0.35 0.83 16 48 H 0.05 0.87 6.21 -51.93 -0.32 0.55 16 49 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 50 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -29.43 364.72 -9.51 -38.94 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.78 Total: -2.26 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 0.57 Total: -17.24 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -1.14 Total: -42.22 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.43 -9.51 -38.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093089407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.805 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds