Wall clock time and date at job start Tue Mar 31 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46906 * 110.99553 * 2 1 4 4 C 1.53000 * 109.47205 * 75.85415 * 3 2 1 5 5 C 1.53119 * 109.52296 * 184.99944 * 4 3 2 6 6 C 1.53033 * 109.27791 * 182.43886 * 5 4 3 7 7 N 1.46849 * 109.52225 * 59.17653 * 6 5 4 8 8 C 1.46902 * 110.99838 * 174.15789 * 7 6 5 9 9 C 1.46843 * 111.20043 * 298.25944 * 7 6 5 10 10 C 1.53035 * 109.52173 * 61.74033 * 9 7 6 11 11 C 1.46903 * 111.00049 * 236.04943 * 2 1 3 12 12 C 1.52998 * 109.46898 * 210.67989 * 11 2 1 13 13 C 1.53003 * 109.47157 * 294.32440 * 12 11 2 14 14 C 1.52993 * 109.47012 * 54.33075 * 12 11 2 15 15 C 1.52998 * 109.46864 * 174.32841 * 12 11 2 16 16 C 1.50698 * 109.47080 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00058 * 359.97438 * 16 15 12 18 18 C 1.37879 * 119.99965 * 179.97438 * 16 15 12 19 19 N 1.31520 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00018 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47244 * 89.99850 * 20 18 16 22 22 H 1.48505 * 109.47024 * 209.99759 * 20 18 16 23 23 H 1.48500 * 109.47286 * 329.99749 * 20 18 16 24 24 H 1.08998 * 109.47962 * 63.98189 * 1 2 3 25 25 H 1.09005 * 109.46669 * 183.98398 * 1 2 3 26 26 H 1.09004 * 109.47477 * 303.97454 * 1 2 3 27 27 H 1.09002 * 109.46830 * 315.85400 * 3 2 1 28 28 H 1.08999 * 109.47239 * 195.85710 * 3 2 1 29 29 H 1.09004 * 109.57302 * 305.15744 * 4 3 2 30 30 H 1.08998 * 109.50165 * 62.49681 * 5 4 3 31 31 H 1.08997 * 109.53405 * 302.40177 * 5 4 3 32 32 H 1.09005 * 109.46385 * 299.16356 * 6 5 4 33 33 H 1.08997 * 109.46449 * 179.19186 * 6 5 4 34 34 H 1.08998 * 109.47261 * 60.00628 * 8 7 6 35 35 H 1.08994 * 109.47170 * 300.00377 * 8 7 6 36 36 H 1.09008 * 109.46801 * 180.02562 * 8 7 6 37 37 H 1.09007 * 109.46118 * 181.75508 * 9 7 6 38 38 H 1.08994 * 109.46368 * 301.72514 * 9 7 6 39 39 H 1.09008 * 109.50311 * 180.87575 * 10 9 7 40 40 H 1.09005 * 109.53772 * 60.78497 * 10 9 7 41 41 H 1.08997 * 109.46982 * 330.68273 * 11 2 1 42 42 H 1.09006 * 109.47085 * 90.67844 * 11 2 1 43 43 H 1.09004 * 109.46520 * 70.72608 * 13 12 11 44 44 H 1.08995 * 109.46971 * 190.72243 * 13 12 11 45 45 H 1.08993 * 109.47344 * 310.73094 * 13 12 11 46 46 H 1.08996 * 109.47851 * 65.06416 * 14 12 11 47 47 H 1.09007 * 109.47057 * 185.06282 * 14 12 11 48 48 H 1.09004 * 109.47395 * 305.05485 * 14 12 11 49 49 H 1.08997 * 109.47204 * 300.00239 * 15 12 11 50 50 H 1.09004 * 109.47422 * 60.00005 * 15 12 11 51 51 H 0.96996 * 120.00108 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.8489 1.9740 1.3987 5 6 2.2811 3.4427 1.3711 6 6 2.1904 4.0227 2.7844 7 7 3.0586 3.2552 3.6864 8 6 3.1040 3.8678 5.0209 9 6 2.6337 1.8518 3.7658 10 6 2.7376 1.2070 2.3818 11 6 1.9954 -0.7659 -1.1376 12 6 3.3364 -1.3940 -0.7527 13 6 4.3678 -0.2891 -0.5154 14 6 3.1660 -2.2160 0.5264 15 6 3.8163 -2.3051 -1.8843 16 6 5.1374 -2.9233 -1.5054 17 1 5.5897 -2.6895 -0.5530 18 6 5.7686 -3.7876 -2.3747 19 7 6.9218 -4.3267 -2.0443 20 14 4.9866 -4.1915 -4.0224 21 1 5.4527 -3.2190 -5.0433 22 1 5.3769 -5.5646 -4.4321 23 1 3.5087 -4.1123 -3.9016 24 1 -0.3635 0.4508 -0.9234 25 1 -0.3633 -1.0253 0.0714 26 1 -0.3634 0.5743 0.8522 27 1 1.4370 1.9749 -0.7158 28 1 3.0484 1.3566 -0.2808 29 1 0.8091 1.9062 1.7185 30 1 1.6247 4.0027 0.7051 31 1 3.3084 3.5136 1.0138 32 1 1.1601 3.9647 3.1354 33 1 2.5112 5.0643 2.7707 34 1 2.0992 3.8953 5.4424 35 1 3.4926 4.8830 4.9415 36 1 3.7542 3.2797 5.6687 37 1 3.2765 1.3168 4.4649 38 1 1.6014 1.8039 4.1121 39 1 2.4074 0.1697 2.4379 40 1 3.7722 1.2415 2.0403 41 1 1.2891 -1.5521 -1.4043 42 1 2.1370 -0.1005 -1.9893 43 1 4.1256 0.2423 0.4050 44 1 5.3604 -0.7310 -0.4295 45 1 4.3518 0.4087 -1.3526 46 1 2.5001 -3.0568 0.3321 47 1 4.1375 -2.5894 0.8505 48 1 2.7392 -1.5875 1.3081 49 1 3.0815 -3.0923 -2.0534 50 1 3.9376 -1.7195 -2.7956 51 1 7.3657 -4.9350 -2.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093089407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:58 Heat of formation + Delta-G solvation = -25.475272 kcal Electronic energy + Delta-G solvation = -24160.467910 eV Core-core repulsion = 21093.362199 eV Total energy + Delta-G solvation = -3067.105711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52271 -39.20914 -36.73385 -34.61227 -34.02989 -31.70651 -29.83280 -29.36539 -27.95835 -27.56511 -26.19769 -24.81161 -23.98880 -23.18631 -21.65840 -20.53959 -19.38299 -18.81657 -16.79680 -16.61736 -16.28583 -16.18676 -15.92548 -15.55307 -15.33090 -15.09855 -14.84646 -14.51032 -14.20452 -14.15840 -13.88199 -13.67207 -13.38386 -13.23532 -13.09046 -12.91249 -12.81696 -12.65623 -12.40805 -12.29874 -12.22440 -12.13191 -11.94257 -11.92978 -11.69837 -11.49939 -11.23858 -11.15069 -11.06125 -10.82763 -10.67934 -10.59149 -9.21631 -9.04299 -8.19565 -6.19347 1.36141 1.37888 1.49118 2.40938 3.07494 3.08620 3.15367 3.88037 3.95648 4.00609 4.13383 4.24085 4.29926 4.38457 4.45901 4.47621 4.52769 4.55062 4.64058 4.67308 4.71688 4.78254 4.80052 4.84142 4.88435 4.96182 4.97158 5.01211 5.03541 5.05027 5.07691 5.12644 5.15621 5.18892 5.29697 5.33906 5.41381 5.47088 5.49978 5.59711 5.62956 5.74459 5.81792 5.88557 6.19652 6.22413 6.26058 6.34959 6.46758 6.88036 7.42736 8.96840 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024900 B = 0.003931 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.205652 B = 7120.977199 C = 7672.085882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.046 3.954 4 C -0.070 4.070 5 C -0.110 4.110 6 C 0.060 3.940 7 N -0.561 5.561 8 C 0.026 3.974 9 C 0.059 3.941 10 C -0.100 4.100 11 C 0.073 3.927 12 C -0.041 4.041 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.003 4.003 16 C -0.500 4.500 17 H 0.043 0.957 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.249 1.249 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.041 0.959 46 H 0.032 0.968 47 H 0.021 0.979 48 H 0.072 0.928 49 H 0.012 0.988 50 H 0.008 0.992 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 17.594 9.298 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.260 5.260 3 C -0.082 4.082 4 C -0.089 4.089 5 C -0.149 4.149 6 C -0.067 4.067 7 N -0.286 5.286 8 C -0.122 4.122 9 C -0.069 4.069 10 C -0.137 4.137 11 C -0.055 4.055 12 C -0.041 4.041 13 C -0.183 4.183 14 C -0.162 4.162 15 C -0.041 4.041 16 C -0.539 4.539 17 H 0.061 0.939 18 C -0.195 4.195 19 N -0.598 5.598 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.215 1.215 23 H -0.173 1.173 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.091 0.909 49 H 0.030 0.970 50 H 0.027 0.973 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.817 17.266 9.477 24.647 hybrid contribution -0.603 -0.395 -1.236 1.431 sum -15.420 16.870 8.242 24.297 Atomic orbital electron populations 1.22443 0.86901 1.02182 1.00555 1.61825 1.07919 1.13496 1.42776 1.22540 1.01140 0.87895 0.96597 1.21063 0.99386 0.94168 0.94241 1.21606 1.01933 0.95077 0.96250 1.22067 0.94385 0.97651 0.92639 1.61928 1.52785 1.02649 1.11269 1.22372 1.00242 1.00449 0.89167 1.22087 0.98292 0.88576 0.97934 1.21506 0.99489 0.99199 0.93537 1.22087 0.95891 0.96462 0.91042 1.20268 0.93615 0.94713 0.95521 1.21935 0.98434 0.97335 1.00639 1.21483 0.99135 0.98351 0.97219 1.19613 0.94737 0.94786 0.94995 1.21427 1.04515 1.24755 1.03158 0.93903 1.25925 0.95279 0.96113 1.02223 1.70071 1.17990 1.33183 1.38516 0.85799 0.80299 0.77273 0.80083 1.19665 1.21479 1.17281 0.95740 0.91618 0.90526 0.94645 0.90346 0.91273 0.90412 0.92119 0.94781 0.90054 0.95392 0.90678 0.91331 0.91189 0.94879 0.91131 0.93037 0.91638 0.94823 0.90969 0.95118 0.93976 0.94846 0.95941 0.90873 0.96955 0.97337 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.25 127.69 1.18 1.73 16 2 N -0.54 -13.49 2.95 -922.43 -2.72 -16.20 16 3 C 0.05 1.05 3.63 86.30 0.31 1.37 16 4 C -0.07 -1.39 2.31 -10.72 -0.02 -1.41 16 5 C -0.11 -1.97 5.38 30.65 0.16 -1.80 16 6 C 0.06 1.01 5.46 86.32 0.47 1.49 16 7 N -0.56 -11.01 4.91 -922.59 -4.53 -15.54 16 8 C 0.03 0.39 9.59 127.69 1.22 1.62 16 9 C 0.06 1.20 5.46 86.33 0.47 1.67 16 10 C -0.10 -2.28 4.72 30.64 0.14 -2.14 16 11 C 0.07 2.25 4.24 86.30 0.37 2.61 16 12 C -0.04 -1.55 0.61 -52.18 -0.03 -1.58 16 13 C -0.13 -4.78 6.81 71.98 0.49 -4.29 16 14 C -0.10 -4.02 7.97 71.98 0.57 -3.45 16 15 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 16 C -0.50 -28.61 8.11 25.60 0.21 -28.40 16 17 H 0.04 2.70 6.00 -2.91 -0.02 2.68 16 18 C 0.00 0.00 5.47 84.65 0.46 0.47 16 19 N -0.96 -60.91 13.96 21.45 0.30 -60.61 16 20 Si 0.94 45.31 27.47 68.60 1.88 47.19 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 24 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 1.34 8.06 -2.38 -0.02 1.32 16 26 H 0.08 1.34 6.70 -2.38 -0.02 1.32 16 27 H 0.04 0.76 8.00 -2.39 -0.02 0.74 16 28 H 0.08 2.08 4.27 -2.39 -0.01 2.07 16 29 H 0.07 1.31 6.73 -2.38 -0.02 1.30 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 34 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16 37 H 0.07 1.44 8.09 -2.38 -0.02 1.42 16 38 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 1.78 6.77 -2.38 -0.02 1.76 16 40 H 0.05 1.39 6.76 -2.38 -0.02 1.37 16 41 H 0.07 1.98 7.72 -2.39 -0.02 1.96 16 42 H 0.03 1.02 7.79 -2.38 -0.02 1.00 16 43 H 0.07 2.40 4.37 -2.38 -0.01 2.38 16 44 H 0.03 1.37 6.34 -2.39 -0.02 1.35 16 45 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.02 0.97 6.80 -2.38 -0.02 0.96 16 48 H 0.07 2.45 6.21 -2.38 -0.01 2.44 16 49 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16 50 H 0.01 0.39 7.57 -2.38 -0.02 0.37 16 51 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -64.55 364.72 1.85 -62.71 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.80 Total: 14.64 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 6.11 Total: -32.19 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -6.95 Total: -92.36 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Total: -64.55 1.85 -62.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093089407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.231 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds