Wall clock time and date at job start Tue Mar 31 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47304 * 2 1 4 4 C 1.46906 * 110.99675 * 66.04467 * 3 2 1 5 5 C 1.46897 * 111.00251 * 189.99972 * 3 2 1 6 6 C 1.52995 * 109.47321 * 170.00365 * 5 3 2 7 7 H 1.09000 * 110.87649 * 57.38460 * 6 5 3 8 8 C 1.55143 * 110.98743 * 293.54233 * 6 5 3 9 9 C 1.54319 * 103.02054 * 206.21754 * 8 6 5 10 10 N 1.47438 * 107.23376 * 22.28330 * 9 8 6 11 11 C 1.46896 * 110.99958 * 123.25434 * 10 9 8 12 12 C 1.53010 * 109.46927 * 77.20755 * 11 10 9 13 13 C 1.52999 * 109.46752 * 294.62797 * 12 11 10 14 14 C 1.52997 * 109.47157 * 174.62437 * 12 11 10 15 15 C 1.52994 * 109.46959 * 54.62243 * 12 11 10 16 16 C 1.50700 * 109.46914 * 180.02562 * 15 12 11 17 17 H 1.08002 * 120.00319 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99845 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00296 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47243 * 59.99972 * 20 18 16 22 22 H 1.48504 * 109.46971 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47059 * 299.99866 * 20 18 16 24 24 C 1.47848 * 108.56698 * 0.99079 * 10 9 8 25 25 H 1.08994 * 109.47220 * 299.99680 * 1 2 3 26 26 H 1.09000 * 109.46991 * 59.99930 * 1 2 3 27 27 H 1.08999 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47528 * 239.99659 * 2 1 3 29 29 H 1.09007 * 109.47354 * 120.00043 * 2 1 3 30 30 H 1.09000 * 109.46580 * 183.95330 * 4 3 2 31 31 H 1.08994 * 109.47074 * 303.95306 * 4 3 2 32 32 H 1.09002 * 109.47087 * 63.95608 * 4 3 2 33 33 H 1.09003 * 109.47274 * 49.99517 * 5 3 2 34 34 H 1.09004 * 109.46971 * 289.99929 * 5 3 2 35 35 H 1.09008 * 110.70696 * 87.83660 * 8 6 5 36 36 H 1.09000 * 110.86055 * 324.67409 * 8 6 5 37 37 H 1.08998 * 109.88652 * 262.87925 * 9 8 6 38 38 H 1.08997 * 110.02406 * 141.76706 * 9 8 6 39 39 H 1.08993 * 109.47562 * 317.21019 * 11 10 9 40 40 H 1.09003 * 109.47664 * 197.20311 * 11 10 9 41 41 H 1.08999 * 109.47597 * 67.18284 * 13 12 11 42 42 H 1.09002 * 109.47076 * 307.18262 * 13 12 11 43 43 H 1.08999 * 109.46910 * 187.18717 * 13 12 11 44 44 H 1.09000 * 109.46885 * 174.51227 * 14 12 11 45 45 H 1.08997 * 109.47430 * 294.51728 * 14 12 11 46 46 H 1.09003 * 109.46929 * 54.51573 * 14 12 11 47 47 H 1.09003 * 109.47735 * 300.00053 * 15 12 11 48 48 H 1.09002 * 109.47205 * 60.00720 * 15 12 11 49 49 H 0.97004 * 120.00096 * 179.97438 * 19 18 16 50 50 H 1.09003 * 110.37219 * 94.72902 * 24 10 9 51 51 H 1.09002 * 110.37492 * 217.07447 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2534 5 6 3.4685 1.4311 -0.2381 6 6 3.8999 2.8791 -0.4790 7 1 3.6250 3.5118 0.3649 8 6 3.2999 3.4250 -1.8014 9 6 4.3075 4.5183 -2.2152 10 7 5.5859 4.2087 -1.5491 11 6 6.6708 4.0717 -2.5299 12 6 7.1161 5.4597 -2.9951 13 6 5.9736 6.1324 -3.7586 14 6 8.3327 5.3240 -3.9129 15 6 7.4871 6.3104 -1.7788 16 6 7.9251 7.6777 -2.2369 17 1 7.9372 7.9161 -3.2902 18 6 8.3104 8.6242 -1.3114 19 7 8.2952 8.3341 -0.0288 20 14 8.8526 10.3192 -1.8792 21 1 7.7428 10.9719 -2.6191 22 1 9.2140 11.1445 -0.6988 23 1 10.0327 10.1884 -2.7712 24 6 5.4197 2.9659 -0.7658 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.9824 3.1098 1.1988 31 1 0.5920 2.0179 1.4052 32 1 2.1769 1.5790 2.0860 33 1 3.7123 0.8289 -1.1134 34 1 3.9925 1.0359 0.6322 35 1 2.3136 3.8556 -1.6284 36 1 3.2495 2.6414 -2.5574 37 1 3.9480 5.4952 -1.8920 38 1 4.4418 4.5119 -3.2968 39 1 6.3163 3.4980 -3.3861 40 1 7.5133 3.5550 -2.0701 41 1 5.1535 6.3447 -3.0726 42 1 5.6237 5.4679 -4.5486 43 1 6.3297 7.0639 -4.1986 44 1 8.5902 6.3011 -4.3216 45 1 9.1762 4.9347 -3.3429 46 1 8.0982 4.6395 -4.7281 47 1 6.6204 6.4071 -1.1249 48 1 8.3011 5.8312 -1.2348 49 1 8.5667 8.9999 0.6224 50 1 5.7458 2.1039 -1.3479 51 1 5.9791 3.0280 0.1677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093770783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:37 Heat of formation + Delta-G solvation = -4.422336 kcal Electronic energy + Delta-G solvation = -23588.078556 eV Core-core repulsion = 20521.885769 eV Total energy + Delta-G solvation = -3066.192787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.44132 -37.84036 -35.90452 -32.60016 -31.83056 -30.12812 -29.19804 -27.25209 -26.87645 -26.24241 -25.24570 -23.59404 -22.62957 -21.26981 -20.41661 -19.87449 -17.72425 -16.48893 -16.07441 -15.67457 -15.34077 -15.27252 -14.44097 -14.14434 -13.97140 -13.55595 -13.45041 -13.22578 -12.72503 -12.51826 -12.44474 -12.34949 -12.08729 -11.97452 -11.86376 -11.75081 -11.62069 -11.24395 -11.13253 -10.88091 -10.84599 -10.71635 -10.65046 -10.54068 -10.33206 -10.21056 -10.12494 -9.93867 -9.49076 -8.85762 -8.65066 -8.49437 -8.16707 -7.64934 -5.81192 -3.80528 3.41570 3.46132 3.48284 3.69055 4.40015 4.59343 4.71503 4.82819 4.90289 4.96075 5.02865 5.23557 5.25535 5.30417 5.43555 5.49801 5.53259 5.54275 5.58848 5.62125 5.71558 5.73510 5.79856 5.84122 5.89611 5.97269 5.99460 6.07947 6.14479 6.23130 6.29005 6.37915 6.38467 6.46765 6.56909 6.60265 6.83787 6.85283 6.87465 6.89694 7.15542 7.30303 7.43238 7.53758 7.73267 7.93876 8.15682 8.32721 8.66399 9.27162 9.80673 11.29914 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.003357 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.461565 B = 8337.643346 C = 8775.326663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.019 3.981 5 C 0.067 3.933 6 C -0.093 4.093 7 H 0.084 0.916 8 C -0.122 4.122 9 C 0.038 3.962 10 N -0.511 5.511 11 C 0.067 3.933 12 C -0.058 4.058 13 C -0.130 4.130 14 C -0.126 4.126 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.882 3.118 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.050 3.950 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.026 0.974 47 H 0.034 0.966 48 H 0.007 0.993 49 H 0.257 0.743 50 H 0.038 0.962 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 -16.501 -0.981 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.129 4.129 5 C -0.061 4.061 6 C -0.113 4.113 7 H 0.102 0.898 8 C -0.160 4.160 9 C -0.089 4.089 10 N -0.234 5.234 11 C -0.061 4.061 12 C -0.058 4.058 13 C -0.187 4.187 14 C -0.184 4.184 15 C 0.010 3.990 16 C -0.547 4.547 17 H 0.071 0.929 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.206 1.206 24 C -0.079 4.079 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.025 0.975 49 H 0.066 0.934 50 H 0.056 0.944 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.972 -15.768 -0.867 20.436 hybrid contribution 0.633 -0.084 -0.079 0.644 sum -12.338 -15.852 -0.946 20.110 Atomic orbital electron populations 1.21799 0.94936 1.01346 1.02547 1.22080 0.96107 0.89124 1.00525 1.62000 1.14042 1.15382 1.34938 1.22483 1.01156 0.99851 0.89442 1.22081 0.86876 0.96945 1.00236 1.22300 0.94904 0.95108 0.98966 0.89787 1.22706 0.99177 0.98063 0.96085 1.23154 0.89045 0.98738 0.97983 1.63481 1.04336 1.31378 1.24236 1.22402 0.93400 0.97984 0.92349 1.20598 0.93948 0.93334 0.97955 1.21996 0.98826 0.99572 0.98329 1.21730 0.97878 1.00967 0.97802 1.18990 0.96824 0.92229 0.90948 1.21336 1.42937 0.97803 0.92586 0.92909 1.24981 0.96358 0.98154 0.94987 1.69972 1.48964 1.34304 1.00327 0.86828 0.79013 0.85189 0.77919 1.20489 1.21550 1.20551 1.23016 0.94939 0.91398 0.98539 0.92661 0.91810 0.92510 0.91005 0.95186 0.90771 0.91374 0.95810 0.91000 0.94805 0.91048 0.92190 0.90604 0.92252 0.96224 0.91964 0.92206 0.95830 0.92653 0.91966 0.93596 0.95505 0.94730 0.97506 0.93354 0.94401 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.84 37.16 0.37 -0.72 16 2 C 0.05 0.42 5.68 -3.82 -0.02 0.40 16 3 N -0.54 -5.39 4.58 -242.91 -1.11 -6.50 16 4 C 0.02 0.18 9.14 60.07 0.55 0.72 16 5 C 0.07 0.70 4.41 -3.83 -0.02 0.68 16 6 C -0.09 -1.16 2.89 -88.48 -0.26 -1.41 16 7 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 8 C -0.12 -1.55 6.24 -24.91 -0.16 -1.71 16 9 C 0.04 0.59 4.86 -2.84 -0.01 0.58 16 10 N -0.51 -8.87 4.11 -231.25 -0.95 -9.82 16 11 C 0.07 1.19 3.89 -3.82 -0.01 1.18 16 12 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 13 C -0.13 -2.52 6.59 37.16 0.24 -2.28 16 14 C -0.13 -2.44 8.11 37.16 0.30 -2.14 16 15 C 0.05 1.22 3.82 -27.89 -0.11 1.11 16 16 C -0.51 -14.25 7.79 -34.44 -0.27 -14.52 16 17 H 0.05 1.44 5.71 -52.49 -0.30 1.14 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 20 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.05 0.71 6.09 -2.30 -0.01 0.70 16 25 H 0.05 0.40 6.47 -51.93 -0.34 0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 29 H 0.03 0.25 8.12 -51.92 -0.42 -0.17 16 30 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 31 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 37 H 0.08 1.28 7.36 -51.93 -0.38 0.90 16 38 H 0.06 0.91 5.35 -51.93 -0.28 0.64 16 39 H 0.02 0.32 7.72 -51.93 -0.40 -0.08 16 40 H 0.06 1.12 7.97 -51.93 -0.41 0.71 16 41 H 0.06 1.18 5.43 -51.93 -0.28 0.90 16 42 H 0.02 0.39 7.45 -51.93 -0.39 0.00 16 43 H 0.05 1.14 6.86 -51.93 -0.36 0.79 16 44 H 0.06 1.28 6.80 -51.93 -0.35 0.92 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.03 0.98 7.46 -51.93 -0.39 0.59 16 48 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 50 H 0.04 0.51 7.71 -51.93 -0.40 0.11 16 51 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -30.05 373.37 -10.20 -40.24 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -9.88 Total: -2.72 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 0.40 Total: -17.18 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.33 Total: -43.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.05 -10.20 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093770783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.821 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds