Wall clock time and date at job start Tue Mar 31 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46564 * 2 1 4 4 C 1.46896 * 111.00122 * 66.05158 * 3 2 1 5 5 C 1.46900 * 110.99595 * 189.99672 * 3 2 1 6 6 C 1.53007 * 109.47030 * 75.76658 * 5 3 2 7 7 H 1.09003 * 110.87158 * 304.86461 * 6 5 3 8 8 C 1.55395 * 111.06161 * 68.60404 * 6 5 3 9 9 C 1.54312 * 102.90293 * 153.65208 * 8 6 5 10 10 N 1.47448 * 107.36788 * 337.89421 * 9 8 6 11 11 C 1.46891 * 110.99970 * 236.65875 * 10 9 8 12 12 C 1.53002 * 109.47361 * 289.83651 * 11 10 9 13 13 C 1.52999 * 109.46788 * 306.20975 * 12 11 10 14 14 C 1.52995 * 109.47099 * 66.20982 * 12 11 10 15 15 C 1.53003 * 109.47302 * 186.21367 * 12 11 10 16 16 C 1.50693 * 109.47249 * 180.02562 * 15 12 11 17 17 H 1.08007 * 120.00036 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00094 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00238 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47480 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47198 * 119.99676 * 20 18 16 23 23 H 1.48503 * 109.47090 * 239.99418 * 20 18 16 24 24 C 1.47839 * 108.56628 * 358.93176 * 10 9 8 25 25 H 1.08994 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47001 * 300.00164 * 1 2 3 27 27 H 1.09001 * 109.46967 * 59.99658 * 1 2 3 28 28 H 1.08996 * 109.47242 * 240.00312 * 2 1 3 29 29 H 1.08997 * 109.47236 * 119.99917 * 2 1 3 30 30 H 1.09008 * 109.47278 * 178.04683 * 4 3 2 31 31 H 1.09003 * 109.46900 * 298.04366 * 4 3 2 32 32 H 1.09000 * 109.47661 * 58.04543 * 4 3 2 33 33 H 1.08995 * 109.47636 * 315.76553 * 5 3 2 34 34 H 1.09009 * 109.47410 * 195.76133 * 5 3 2 35 35 H 1.09007 * 110.67637 * 35.34472 * 8 6 5 36 36 H 1.09001 * 110.84220 * 272.03810 * 8 6 5 37 37 H 1.09001 * 109.89259 * 218.40835 * 9 8 6 38 38 H 1.08998 * 109.88808 * 97.37519 * 9 8 6 39 39 H 1.09002 * 109.47271 * 49.83804 * 11 10 9 40 40 H 1.09003 * 109.47050 * 169.83488 * 11 10 9 41 41 H 1.08997 * 109.47135 * 64.35840 * 13 12 11 42 42 H 1.09004 * 109.47072 * 184.35146 * 13 12 11 43 43 H 1.08997 * 109.47403 * 304.35284 * 13 12 11 44 44 H 1.09002 * 109.47003 * 48.37926 * 14 12 11 45 45 H 1.09008 * 109.47059 * 168.37495 * 14 12 11 46 46 H 1.09000 * 109.47076 * 288.37341 * 14 12 11 47 47 H 1.09000 * 109.46778 * 300.00079 * 15 12 11 48 48 H 1.08998 * 109.47394 * 59.99805 * 15 12 11 49 49 H 0.96998 * 120.00540 * 180.02562 * 19 18 16 50 50 H 1.09006 * 110.37154 * 142.92848 * 24 10 9 51 51 H 1.09001 * 110.37226 * 265.26166 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.7502 1.1742 -1.7198 7 1 3.3017 0.2348 -2.0432 8 6 3.2515 2.3565 -2.5964 9 6 4.1684 2.2778 -3.8351 10 7 5.3841 1.5445 -3.4370 11 6 6.5887 2.3466 -3.6882 12 6 6.8195 2.4617 -5.1963 13 6 6.8492 1.0631 -5.8159 14 6 5.6857 3.2741 -5.8252 15 6 8.1543 3.1630 -5.4560 16 6 8.3813 3.2770 -6.9414 17 1 7.6471 2.8877 -7.6313 18 6 9.5267 3.8772 -7.4197 19 7 10.4209 4.3507 -6.5797 20 14 9.8083 4.0177 -9.2610 21 1 8.6622 3.4115 -9.9849 22 1 9.9293 5.4497 -9.6354 23 1 11.0579 3.3033 -9.6266 24 6 5.2725 1.1898 -2.0061 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0743 3.0792 1.2412 31 1 0.5856 2.1099 1.3534 32 1 2.0912 1.5177 2.0955 33 1 3.9600 0.6665 0.3632 34 1 3.8512 2.4134 0.0395 35 1 3.3867 3.3049 -2.0764 36 1 2.2083 2.2163 -2.8795 37 1 4.4328 3.2823 -4.1653 38 1 3.6606 1.7449 -4.6390 39 1 6.4575 3.3420 -3.2637 40 1 7.4494 1.8645 -3.2247 41 1 5.8729 0.5930 -5.6986 42 1 7.0902 1.1404 -6.8761 43 1 7.6057 0.4596 -5.3144 44 1 5.5297 4.1864 -5.2494 45 1 5.9494 3.5325 -6.8509 46 1 4.7704 2.6823 -5.8235 47 1 8.1331 4.1594 -5.0146 48 1 8.9620 2.5843 -5.0080 49 1 11.2266 4.7733 -6.9162 50 1 5.7029 0.2049 -1.8246 51 1 5.7669 1.9404 -1.3894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093770784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:39 Heat of formation + Delta-G solvation = -2.447628 kcal Electronic energy + Delta-G solvation = -23415.699707 eV Core-core repulsion = 20349.592550 eV Total energy + Delta-G solvation = -3066.107158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.55127 -37.93630 -35.93194 -32.69125 -31.67616 -30.49491 -29.49812 -27.30416 -26.48805 -26.20865 -25.37192 -24.02700 -22.51007 -21.48000 -20.45323 -19.93008 -17.79274 -16.38385 -16.11199 -15.79643 -15.59736 -15.08794 -14.67977 -14.34389 -13.85775 -13.58283 -13.46227 -13.39534 -12.77851 -12.70397 -12.47296 -12.45208 -12.12771 -12.05730 -12.01788 -11.83098 -11.61724 -11.26340 -11.03966 -10.99234 -10.88978 -10.72463 -10.64949 -10.60961 -10.33782 -10.27545 -10.12714 -9.85591 -9.53328 -8.93147 -8.74250 -8.57186 -8.28250 -7.87143 -5.92797 -3.92319 3.34831 3.42594 3.46465 3.61430 4.29822 4.52400 4.68792 4.74499 4.75592 4.91762 4.97833 5.14422 5.18057 5.23652 5.34996 5.41106 5.43138 5.47634 5.52158 5.56426 5.64283 5.70817 5.73423 5.78109 5.82348 5.92382 5.93887 6.05417 6.12153 6.20228 6.23889 6.37025 6.40411 6.48497 6.61004 6.77097 6.80365 6.81490 6.85101 6.93897 7.27028 7.30423 7.34722 7.44015 7.59337 7.76308 7.91437 8.08167 8.53190 9.13300 9.70120 11.18992 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044476 B = 0.002897 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.395888 B = 9664.312839 C = 9814.586965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.540 5.540 4 C 0.023 3.977 5 C 0.065 3.935 6 C -0.090 4.090 7 H 0.080 0.920 8 C -0.123 4.123 9 C 0.030 3.970 10 N -0.521 5.521 11 C 0.062 3.938 12 C -0.054 4.054 13 C -0.113 4.113 14 C -0.139 4.139 15 C 0.033 3.967 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.286 1.286 24 C 0.047 3.953 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.027 0.973 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.011 0.989 48 H 0.014 0.986 49 H 0.258 0.742 50 H 0.073 0.927 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 -6.885 14.569 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.264 5.264 4 C -0.125 4.125 5 C -0.063 4.063 6 C -0.109 4.109 7 H 0.098 0.902 8 C -0.162 4.162 9 C -0.098 4.098 10 N -0.245 5.245 11 C -0.065 4.065 12 C -0.055 4.055 13 C -0.170 4.170 14 C -0.196 4.196 15 C -0.004 4.004 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.082 4.082 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.067 0.933 50 H 0.092 0.908 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.857 -6.997 13.887 23.678 hybrid contribution 0.757 0.517 0.254 0.951 sum -17.099 -6.480 14.141 23.116 Atomic orbital electron populations 1.21791 0.94963 1.01448 1.02404 1.22145 0.96042 0.88952 1.00824 1.61970 1.14055 1.15911 1.34443 1.22420 1.01619 0.98816 0.89667 1.22096 0.87177 1.01063 0.96007 1.22302 0.95347 0.99553 0.93720 0.90157 1.22766 0.99854 0.97509 0.96025 1.23334 0.90669 0.98765 0.97022 1.63571 1.02497 1.42398 1.16043 1.22455 0.91391 0.94272 0.98412 1.20564 0.97818 0.96158 0.90917 1.21563 0.99507 0.95377 1.00541 1.22191 0.97427 0.98113 1.01859 1.19121 0.89831 0.94809 0.96678 1.21284 1.04110 1.36702 0.92104 0.92187 1.25021 0.96343 0.95947 0.97372 1.69977 1.10019 1.40095 1.33754 0.86616 0.78078 0.77577 0.86216 1.19757 1.21222 1.21188 1.23013 0.94934 1.00625 0.89620 0.92435 0.92858 0.91779 0.90488 0.95172 0.91493 0.91240 0.95913 0.94619 0.90915 0.92111 0.91010 0.90960 0.91050 0.95492 0.91624 0.93946 0.92719 0.94427 0.94463 0.91738 0.93522 0.97017 0.96754 0.93271 0.90843 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.84 37.16 0.37 -0.68 16 2 C 0.05 0.39 5.51 -3.82 -0.02 0.37 16 3 N -0.54 -4.90 4.57 -242.91 -1.11 -6.01 16 4 C 0.02 0.18 9.25 60.06 0.56 0.73 16 5 C 0.06 0.62 4.45 -3.82 -0.02 0.60 16 6 C -0.09 -0.98 3.07 -88.34 -0.27 -1.25 16 7 H 0.08 0.90 6.76 -51.93 -0.35 0.55 16 8 C -0.12 -1.45 6.32 -24.77 -0.16 -1.61 16 9 C 0.03 0.41 4.86 -2.84 -0.01 0.40 16 10 N -0.52 -7.99 4.21 -231.26 -0.97 -8.96 16 11 C 0.06 1.12 3.85 -3.83 -0.01 1.10 16 12 C -0.05 -1.11 0.60 -154.51 -0.09 -1.20 16 13 C -0.11 -2.26 7.97 37.16 0.30 -1.96 16 14 C -0.14 -2.67 6.80 37.16 0.25 -2.42 16 15 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 16 C -0.50 -13.95 7.43 -34.44 -0.26 -14.21 16 17 H 0.06 1.63 5.76 -52.48 -0.30 1.32 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.05 0.60 6.15 -2.30 -0.01 0.58 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 6.59 -51.93 -0.34 0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.66 6.62 -51.93 -0.34 0.32 16 29 H 0.03 0.24 8.11 -51.93 -0.42 -0.18 16 30 H 0.07 0.50 7.93 -51.92 -0.41 0.09 16 31 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 32 H 0.02 0.17 8.13 -51.93 -0.42 -0.26 16 33 H 0.04 0.33 8.00 -51.93 -0.42 -0.08 16 34 H 0.07 0.71 7.73 -51.92 -0.40 0.31 16 35 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.10 4.63 -51.93 -0.24 0.86 16 38 H 0.07 1.02 7.44 -51.93 -0.39 0.63 16 39 H 0.03 0.49 7.89 -51.93 -0.41 0.08 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.04 0.78 7.57 -51.93 -0.39 0.38 16 42 H 0.05 1.17 6.49 -51.93 -0.34 0.84 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.69 7.13 -51.93 -0.37 0.32 16 45 H 0.06 1.37 6.32 -51.92 -0.33 1.04 16 46 H 0.05 0.79 5.26 -51.93 -0.27 0.52 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 51 H 0.04 0.54 7.71 -51.93 -0.40 0.13 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -29.28 372.51 -10.17 -39.45 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -9.82 Total: -3.12 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 0.40 Total: -17.36 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -1.35 Total: -41.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.28 -10.17 -39.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093770784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.001 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds