Wall clock time and date at job start Tue Mar 31 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46564 * 2 1 4 4 C 1.46896 * 111.00122 * 66.05158 * 3 2 1 5 5 C 1.46900 * 110.99595 * 189.99672 * 3 2 1 6 6 C 1.53007 * 109.47030 * 75.76658 * 5 3 2 7 7 H 1.09003 * 110.87158 * 304.86461 * 6 5 3 8 8 C 1.55395 * 111.06161 * 68.60404 * 6 5 3 9 9 C 1.54312 * 102.90293 * 153.65208 * 8 6 5 10 10 N 1.47448 * 107.36788 * 337.89421 * 9 8 6 11 11 C 1.46891 * 110.99970 * 236.65875 * 10 9 8 12 12 C 1.53002 * 109.47361 * 289.83651 * 11 10 9 13 13 C 1.52999 * 109.46788 * 306.20975 * 12 11 10 14 14 C 1.52995 * 109.47099 * 66.20982 * 12 11 10 15 15 C 1.53003 * 109.47302 * 186.21367 * 12 11 10 16 16 C 1.50693 * 109.47249 * 180.02562 * 15 12 11 17 17 H 1.08007 * 120.00036 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00094 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00238 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99924 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47480 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47198 * 119.99676 * 20 18 16 23 23 H 1.48503 * 109.47090 * 239.99418 * 20 18 16 24 24 C 1.47839 * 108.56628 * 358.93176 * 10 9 8 25 25 H 1.08994 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47001 * 300.00164 * 1 2 3 27 27 H 1.09001 * 109.46967 * 59.99658 * 1 2 3 28 28 H 1.08996 * 109.47242 * 240.00312 * 2 1 3 29 29 H 1.08997 * 109.47236 * 119.99917 * 2 1 3 30 30 H 1.09008 * 109.47278 * 178.04683 * 4 3 2 31 31 H 1.09003 * 109.46900 * 298.04366 * 4 3 2 32 32 H 1.09000 * 109.47661 * 58.04543 * 4 3 2 33 33 H 1.08995 * 109.47636 * 315.76553 * 5 3 2 34 34 H 1.09009 * 109.47410 * 195.76133 * 5 3 2 35 35 H 1.09007 * 110.67637 * 35.34472 * 8 6 5 36 36 H 1.09001 * 110.84220 * 272.03810 * 8 6 5 37 37 H 1.09001 * 109.89259 * 218.40835 * 9 8 6 38 38 H 1.08998 * 109.88808 * 97.37519 * 9 8 6 39 39 H 1.09002 * 109.47271 * 49.83804 * 11 10 9 40 40 H 1.09003 * 109.47050 * 169.83488 * 11 10 9 41 41 H 1.08997 * 109.47135 * 64.35840 * 13 12 11 42 42 H 1.09004 * 109.47072 * 184.35146 * 13 12 11 43 43 H 1.08997 * 109.47403 * 304.35284 * 13 12 11 44 44 H 1.09002 * 109.47003 * 48.37926 * 14 12 11 45 45 H 1.09008 * 109.47059 * 168.37495 * 14 12 11 46 46 H 1.09000 * 109.47076 * 288.37341 * 14 12 11 47 47 H 1.09000 * 109.46778 * 300.00079 * 15 12 11 48 48 H 1.08998 * 109.47394 * 59.99805 * 15 12 11 49 49 H 0.96998 * 120.00540 * 180.02562 * 19 18 16 50 50 H 1.09006 * 110.37154 * 142.92848 * 24 10 9 51 51 H 1.09001 * 110.37226 * 265.26166 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2533 5 6 3.4684 1.4312 -0.2381 6 6 3.7502 1.1742 -1.7198 7 1 3.3017 0.2348 -2.0432 8 6 3.2515 2.3565 -2.5964 9 6 4.1684 2.2778 -3.8351 10 7 5.3841 1.5445 -3.4370 11 6 6.5887 2.3466 -3.6882 12 6 6.8195 2.4617 -5.1963 13 6 6.8492 1.0631 -5.8159 14 6 5.6857 3.2741 -5.8252 15 6 8.1543 3.1630 -5.4560 16 6 8.3813 3.2770 -6.9414 17 1 7.6471 2.8877 -7.6313 18 6 9.5267 3.8772 -7.4197 19 7 10.4209 4.3507 -6.5797 20 14 9.8083 4.0177 -9.2610 21 1 8.6622 3.4115 -9.9849 22 1 9.9293 5.4497 -9.6354 23 1 11.0579 3.3033 -9.6266 24 6 5.2725 1.1898 -2.0061 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0743 3.0792 1.2412 31 1 0.5856 2.1099 1.3534 32 1 2.0912 1.5177 2.0955 33 1 3.9600 0.6665 0.3632 34 1 3.8512 2.4134 0.0395 35 1 3.3867 3.3049 -2.0764 36 1 2.2083 2.2163 -2.8795 37 1 4.4328 3.2823 -4.1653 38 1 3.6606 1.7449 -4.6390 39 1 6.4575 3.3420 -3.2637 40 1 7.4494 1.8645 -3.2247 41 1 5.8729 0.5930 -5.6986 42 1 7.0902 1.1404 -6.8761 43 1 7.6057 0.4596 -5.3144 44 1 5.5297 4.1864 -5.2494 45 1 5.9494 3.5325 -6.8509 46 1 4.7704 2.6823 -5.8235 47 1 8.1331 4.1594 -5.0146 48 1 8.9620 2.5843 -5.0080 49 1 11.2266 4.7733 -6.9162 50 1 5.7029 0.2049 -1.8246 51 1 5.7669 1.9404 -1.3894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093770784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:38 Heat of formation + Delta-G solvation = -19.396729 kcal Electronic energy + Delta-G solvation = -23416.434676 eV Core-core repulsion = 20349.592550 eV Total energy + Delta-G solvation = -3066.842126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70556 -38.88249 -37.32357 -34.59552 -32.87006 -31.35613 -30.54273 -29.02932 -27.95150 -27.49772 -26.67461 -25.06152 -24.22151 -22.22129 -21.61100 -20.85348 -19.45256 -18.28842 -17.30780 -16.82843 -16.46355 -16.34953 -15.91672 -15.56626 -15.11065 -14.99192 -14.62031 -14.47666 -14.13493 -13.98041 -13.75132 -13.70358 -13.59614 -13.17028 -12.88891 -12.76672 -12.70912 -12.62234 -12.53172 -12.32398 -12.22334 -12.13237 -12.01735 -11.90523 -11.79069 -11.66203 -11.46127 -11.31757 -11.13830 -10.83179 -10.60568 -10.50468 -9.24343 -9.11382 -8.13620 -6.20269 1.40251 1.41163 1.53660 2.44056 2.90752 3.16397 3.20196 3.80423 3.87263 3.91954 4.15254 4.18718 4.19921 4.30303 4.38292 4.46274 4.49115 4.52190 4.60646 4.64075 4.68645 4.73161 4.79228 4.80690 4.85662 4.92603 4.94799 4.98361 5.05669 5.08979 5.11770 5.14099 5.16848 5.22134 5.25976 5.28701 5.39509 5.47410 5.52805 5.55699 5.62125 5.67178 5.88060 5.93922 6.11333 6.17114 6.21499 6.23277 6.39467 6.94625 7.46705 8.99043 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044476 B = 0.002897 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.395888 B = 9664.312839 C = 9814.586965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.549 5.549 4 C 0.023 3.977 5 C 0.070 3.930 6 C -0.077 4.077 7 H 0.082 0.918 8 C -0.113 4.113 9 C 0.027 3.973 10 N -0.526 5.526 11 C 0.075 3.925 12 C -0.051 4.051 13 C -0.102 4.102 14 C -0.130 4.130 15 C 0.040 3.960 16 C -0.511 4.511 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.957 3.043 21 H -0.261 1.261 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.045 3.955 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.030 0.970 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.074 0.926 47 H -0.018 1.018 48 H -0.016 1.016 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.863 -7.755 14.610 25.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.274 5.274 4 C -0.125 4.125 5 C -0.058 4.058 6 C -0.097 4.097 7 H 0.100 0.900 8 C -0.152 4.152 9 C -0.100 4.100 10 N -0.250 5.250 11 C -0.053 4.053 12 C -0.052 4.052 13 C -0.159 4.159 14 C -0.186 4.186 15 C 0.003 3.997 16 C -0.549 4.549 17 H 0.084 0.916 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.782 3.218 21 H -0.185 1.185 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.083 4.083 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -19.897 -7.878 13.933 25.535 hybrid contribution 1.371 0.774 0.302 1.603 sum -18.526 -7.103 14.234 24.419 Atomic orbital electron populations 1.21757 0.94122 1.02088 1.02212 1.22176 0.96722 0.88442 1.00707 1.61969 1.13485 1.16572 1.35339 1.22441 1.02165 0.98692 0.89166 1.21989 0.87837 1.01079 0.94916 1.22192 0.93616 0.99251 0.94598 0.89954 1.22669 0.99718 0.97778 0.95012 1.23333 0.90510 0.97941 0.98256 1.63525 1.01826 1.41660 1.17992 1.22159 0.92619 0.94373 0.96198 1.20434 0.95444 0.96115 0.93160 1.21452 1.00463 0.94916 0.99109 1.22109 0.97885 0.98439 1.00194 1.18998 0.91950 0.93285 0.95511 1.21632 1.04101 1.36029 0.93147 0.91633 1.25929 0.96224 0.95746 1.02306 1.70116 1.10659 1.41200 1.36035 0.85517 0.78246 0.77666 0.80363 1.18472 1.20772 1.20810 1.23072 0.96534 1.00741 0.87990 0.91431 0.92427 0.92533 0.90936 0.94931 0.91491 0.90450 0.95564 0.94205 0.91125 0.92296 0.90150 0.92108 0.90659 0.96138 0.92580 0.91729 0.94424 0.95067 0.94306 0.93914 0.90761 0.99917 0.99773 0.93174 0.90324 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.84 71.98 0.71 -1.01 16 2 C 0.05 0.67 5.51 86.30 0.48 1.14 16 3 N -0.55 -8.81 4.57 -922.43 -4.21 -13.02 16 4 C 0.02 0.31 9.25 127.69 1.18 1.49 16 5 C 0.07 1.20 4.45 86.31 0.38 1.59 16 6 C -0.08 -1.52 3.07 -9.32 -0.03 -1.55 16 7 H 0.08 1.64 6.76 -2.39 -0.02 1.63 16 8 C -0.11 -2.43 6.32 31.86 0.20 -2.23 16 9 C 0.03 0.70 4.86 86.64 0.42 1.12 16 10 N -0.53 -15.41 4.21 -885.57 -3.73 -19.14 16 11 C 0.07 2.69 3.85 86.31 0.33 3.02 16 12 C -0.05 -2.11 0.60 -52.18 -0.03 -2.14 16 13 C -0.10 -4.04 7.97 71.98 0.57 -3.46 16 14 C -0.13 -4.90 6.80 71.98 0.49 -4.41 16 15 C 0.04 2.13 4.04 29.85 0.12 2.25 16 16 C -0.51 -28.80 7.43 25.60 0.19 -28.61 16 17 H 0.07 3.56 5.76 -2.91 -0.02 3.55 16 18 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 19 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 C 0.04 1.08 6.15 86.77 0.53 1.61 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.63 6.59 -2.39 -0.02 0.62 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.09 6.62 -2.39 -0.02 1.07 16 29 H 0.03 0.45 8.11 -2.39 -0.02 0.43 16 30 H 0.07 0.89 7.93 -2.38 -0.02 0.87 16 31 H 0.08 0.91 6.56 -2.39 -0.02 0.89 16 32 H 0.03 0.33 8.13 -2.39 -0.02 0.31 16 33 H 0.04 0.66 8.00 -2.39 -0.02 0.64 16 34 H 0.07 1.25 7.73 -2.38 -0.02 1.23 16 35 H 0.06 1.30 7.99 -2.38 -0.02 1.28 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.75 4.63 -2.39 -0.01 1.74 16 38 H 0.08 1.94 7.44 -2.39 -0.02 1.92 16 39 H 0.02 0.75 7.89 -2.39 -0.02 0.74 16 40 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 41 H 0.06 2.25 7.57 -2.39 -0.02 2.23 16 42 H 0.04 1.59 6.49 -2.38 -0.02 1.57 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.04 1.43 7.13 -2.39 -0.02 1.41 16 45 H 0.04 1.79 6.32 -2.38 -0.02 1.77 16 46 H 0.07 2.39 5.26 -2.39 -0.01 2.37 16 47 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 48 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 49 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 50 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 51 H 0.04 1.00 7.71 -2.39 -0.02 0.98 16 Total: -1.00 -63.09 372.51 1.24 -61.85 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.86 Total: 12.10 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 6.01 Total: -31.05 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -7.66 Total: -89.99 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.09 1.24 -61.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093770784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.451 kcal (2) G-P(sol) polarization free energy of solvation -63.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds