Wall clock time and date at job start Tue Mar 31 2020 05:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46894 * 111.00637 * 2 1 4 4 C 1.52998 * 109.47203 * 293.95299 * 3 2 1 5 5 C 1.50698 * 109.47536 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99852 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00536 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99619 * 0.02562 * 7 5 4 9 9 C 1.46493 * 120.00148 * 180.02562 * 7 5 4 10 10 C 1.50696 * 109.47241 * 90.00678 * 9 7 5 11 11 H 1.08005 * 120.00063 * 359.97438 * 10 9 7 12 12 C 1.37877 * 120.00205 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99819 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00170 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46850 * 60.00205 * 14 12 10 16 16 H 1.48494 * 109.47353 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47094 * 300.00475 * 14 12 10 18 18 C 1.46905 * 110.99823 * 123.95301 * 2 1 3 19 19 C 1.52999 * 109.47433 * 164.04541 * 18 2 1 20 20 C 1.54269 * 110.02962 * 293.41990 * 19 18 2 21 21 C 1.54969 * 104.15814 * 217.13594 * 20 19 18 22 22 C 1.54891 * 102.77587 * 37.88924 * 21 20 19 23 23 C 1.53875 * 110.03421 * 176.20282 * 19 18 2 24 24 H 1.08998 * 109.47675 * 301.53070 * 1 2 3 25 25 H 1.09005 * 109.46752 * 61.52816 * 1 2 3 26 26 H 1.09000 * 109.47819 * 181.52679 * 1 2 3 27 27 H 1.09005 * 109.46724 * 53.94796 * 3 2 1 28 28 H 1.08992 * 109.47863 * 173.94782 * 3 2 1 29 29 H 1.09001 * 109.47072 * 299.99868 * 4 3 2 30 30 H 1.09002 * 109.47523 * 59.99344 * 4 3 2 31 31 H 1.09005 * 109.46932 * 89.99636 * 8 7 5 32 32 H 1.08998 * 109.47125 * 209.99926 * 8 7 5 33 33 H 1.09006 * 109.47182 * 329.99759 * 8 7 5 34 34 H 1.09005 * 109.46856 * 209.99978 * 9 7 5 35 35 H 1.08998 * 109.47375 * 329.99754 * 9 7 5 36 36 H 0.97002 * 119.99287 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.47161 * 284.04690 * 18 2 1 38 38 H 1.09009 * 109.46931 * 44.04247 * 18 2 1 39 39 H 1.09001 * 110.01578 * 54.80709 * 19 18 2 40 40 H 1.09002 * 110.48739 * 335.78174 * 20 19 18 41 41 H 1.08999 * 110.48514 * 98.42796 * 20 19 18 42 42 H 1.08997 * 110.71926 * 279.57623 * 21 20 19 43 43 H 1.09001 * 110.92198 * 156.30129 * 21 20 19 44 44 H 1.08996 * 110.48101 * 203.40635 * 22 21 20 45 45 H 1.08997 * 110.59749 * 80.81755 * 22 21 20 46 46 H 1.08996 * 110.03226 * 238.56775 * 23 19 18 47 47 H 1.09000 * 110.02924 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.1713 3.4644 -1.3181 6 8 2.7867 3.8777 -0.3583 7 7 1.9708 4.2633 -2.3849 8 6 1.2278 3.7639 -3.5446 9 6 2.4959 5.6309 -2.3849 10 6 3.8882 5.6344 -2.9613 11 1 4.3373 4.7102 -3.2941 12 6 4.5889 6.8174 -3.0640 13 7 4.0423 7.9427 -2.6584 14 14 6.3151 6.8216 -3.7779 15 1 6.2763 6.3057 -5.1699 16 1 6.8474 8.2079 -3.7780 17 1 7.1941 5.9544 -2.9529 18 6 1.9953 -0.7660 1.1377 19 6 3.4729 -1.0833 0.8990 20 6 3.6197 -2.0504 -0.2940 21 6 4.7851 -2.9854 0.1172 22 6 4.5464 -3.1833 1.6348 23 6 4.0622 -1.8030 2.1247 24 1 -0.3634 0.5374 0.8759 25 1 -0.3633 0.4899 -0.9034 26 1 -0.3635 -1.0273 0.0274 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3443 0.1083 29 1 2.0659 1.5014 -2.1491 30 1 0.5473 2.0845 -1.4266 31 1 0.1666 3.9767 -3.4153 32 1 1.5897 4.2559 -4.4473 33 1 1.3742 2.6874 -3.6339 34 1 1.8506 6.2678 -2.9899 35 1 2.5247 6.0090 -1.3630 36 1 4.5355 8.7749 -2.7303 37 1 1.8927 -0.1784 2.0499 38 1 1.4358 -1.6960 1.2396 39 1 4.0252 -0.1639 0.7044 40 1 2.7032 -2.6231 -0.4358 41 1 3.8719 -1.5015 -1.2012 42 1 5.7468 -2.5051 -0.0631 43 1 4.7253 -3.9372 -0.4107 44 1 5.4747 -3.4611 2.1338 45 1 3.7805 -3.9395 1.8070 46 1 4.9011 -1.2334 2.5246 47 1 3.2954 -1.9266 2.8895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104353808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:19 Heat of formation + Delta-G solvation = -51.643768 kcal Electronic energy + Delta-G solvation = -22746.490671 eV Core-core repulsion = 19542.417114 eV Total energy + Delta-G solvation = -3204.073557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.32653 -38.62716 -36.64551 -34.75269 -32.63797 -31.37044 -29.86815 -28.73235 -27.78868 -26.24352 -25.67716 -24.36819 -22.51942 -21.13446 -20.58042 -19.48312 -18.31946 -16.55478 -16.52551 -16.09819 -15.58296 -15.22331 -15.18100 -14.63726 -14.50548 -14.16034 -13.90007 -13.50561 -13.37350 -12.97015 -12.49694 -12.17196 -12.11709 -12.00793 -11.81487 -11.60500 -11.54726 -11.24457 -11.13536 -11.07587 -11.03302 -10.92680 -10.78708 -10.73639 -10.68700 -10.51118 -10.21758 -10.13340 -9.61617 -8.84589 -8.41160 -8.33151 -7.60183 -6.02069 -4.06798 3.33508 3.37717 3.39926 3.50271 3.72053 4.18648 4.47282 4.55209 4.57760 4.64955 4.99998 5.06996 5.26120 5.27446 5.30798 5.37096 5.38037 5.40514 5.48957 5.53230 5.54957 5.58686 5.65389 5.70615 5.75265 5.77509 5.80336 5.89434 5.95289 5.96883 6.02590 6.14824 6.16613 6.23204 6.26592 6.28907 6.41924 7.04444 7.05169 7.10656 7.47051 7.57998 7.94567 8.26331 8.46622 8.92885 9.14342 9.58271 11.06012 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.003637 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.191467 B = 7696.515278 C = 8647.564077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.071 3.929 4 C -0.134 4.134 5 C 0.504 3.496 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.084 3.916 9 C 0.245 3.755 10 C -0.526 4.526 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.065 3.935 19 C -0.092 4.092 20 C -0.103 4.103 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.121 4.121 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.033 0.967 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 -21.104 4.704 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.266 5.266 3 C -0.057 4.057 4 C -0.175 4.175 5 C 0.290 3.710 6 O -0.424 6.424 7 N -0.336 5.336 8 C -0.060 4.060 9 C 0.126 3.874 10 C -0.565 4.565 11 H 0.075 0.925 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.063 4.063 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.159 4.159 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.689 -20.878 4.787 22.163 hybrid contribution 0.605 0.566 0.197 0.852 sum -5.085 -20.312 4.984 21.524 Atomic orbital electron populations 1.22422 0.87811 1.01473 1.00952 1.61963 1.07396 1.14253 1.43028 1.21863 1.01248 0.86520 0.96093 1.21635 1.01898 0.94192 0.99729 1.20337 0.80605 0.86952 0.83109 1.90659 1.41468 1.75670 1.34628 1.48160 1.53855 1.16174 1.15408 1.21633 0.95158 0.99025 0.90202 1.19265 0.93668 0.75774 0.98715 1.21412 1.00135 0.93733 1.41222 0.92512 1.24942 0.98298 0.95365 0.95538 1.69929 1.37902 0.98499 1.47177 0.86555 0.84380 0.77018 0.79453 1.20228 1.21172 1.20172 1.22228 0.95403 0.97378 0.91318 1.21817 0.95058 0.99224 0.94985 1.22251 0.97724 0.96376 0.97683 1.22568 0.99156 0.99479 0.95554 1.22335 1.00551 0.97023 0.96167 1.22185 1.00266 0.95991 0.97475 0.95779 0.91108 0.91749 0.94146 0.89801 0.88791 0.89898 0.93894 0.90868 0.92297 0.95103 0.93928 0.92686 0.94871 0.91050 0.90595 0.91664 0.91504 0.91697 0.91963 0.92097 0.91943 0.91801 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.27 60.06 0.56 0.77 16 2 N -0.54 -6.38 4.51 -242.92 -1.10 -7.48 16 3 C 0.07 1.03 4.10 -3.83 -0.02 1.02 16 4 C -0.13 -2.03 4.17 -27.89 -0.12 -2.14 16 5 C 0.50 10.63 7.67 -10.99 -0.08 10.55 16 6 O -0.55 -13.95 15.56 5.56 0.09 -13.86 16 7 N -0.60 -13.08 2.86 -182.95 -0.52 -13.60 16 8 C 0.08 1.35 10.24 59.85 0.61 1.96 16 9 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 10 C -0.53 -15.21 9.39 -34.44 -0.32 -15.54 16 11 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 14 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.06 0.68 4.03 -3.82 -0.02 0.67 16 19 C -0.09 -0.98 2.95 -89.50 -0.26 -1.24 16 20 C -0.10 -1.04 6.17 -25.03 -0.15 -1.19 16 21 C -0.13 -1.16 6.91 -24.69 -0.17 -1.33 16 22 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 23 C -0.12 -1.12 6.46 -25.61 -0.17 -1.28 16 24 H 0.02 0.24 8.13 -51.93 -0.42 -0.18 16 25 H 0.07 0.68 6.54 -51.93 -0.34 0.34 16 26 H 0.06 0.54 7.97 -51.93 -0.41 0.13 16 27 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 28 H 0.08 1.36 6.31 -51.93 -0.33 1.03 16 29 H 0.09 1.33 7.40 -51.93 -0.38 0.95 16 30 H 0.08 1.08 6.55 -51.93 -0.34 0.74 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.03 0.37 8.05 -51.93 -0.42 -0.05 16 38 H 0.07 0.67 7.77 -51.92 -0.40 0.26 16 39 H 0.08 0.96 6.48 -51.93 -0.34 0.62 16 40 H 0.06 0.64 7.78 -51.93 -0.40 0.24 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.69 367.73 -9.38 -42.07 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.67 Total: -2.74 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.43 Total: -0.76 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.88 Total: -47.36 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.69 -9.38 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104353808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.573 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds