Wall clock time and date at job start Tue Mar 31 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.47351 * 2 1 4 4 C 1.46503 * 120.00122 * 89.99779 * 3 2 1 5 5 C 1.50701 * 109.46885 * 90.00321 * 4 3 2 6 6 H 1.07995 * 120.00285 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99809 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00215 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00017 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47456 * 89.99760 * 9 7 5 11 11 H 1.48502 * 109.46859 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.47093 * 329.99583 * 9 7 5 13 13 C 1.34776 * 119.99819 * 270.00066 * 3 2 1 14 14 O 1.21289 * 119.99665 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00367 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47093 * 185.19752 * 15 13 3 17 17 C 1.46850 * 110.99509 * 198.27938 * 16 15 13 18 18 H 1.09000 * 109.46219 * 294.17265 * 17 16 15 19 19 C 1.53004 * 109.46515 * 54.14628 * 17 16 15 20 20 C 1.53039 * 109.52057 * 174.16188 * 17 16 15 21 21 C 1.53118 * 109.28097 * 59.18041 * 20 17 16 22 22 C 1.53120 * 109.15720 * 302.34408 * 21 20 17 23 23 C 1.46839 * 111.00352 * 74.07036 * 16 15 13 24 24 H 1.09001 * 109.46127 * 305.85510 * 23 16 15 25 25 C 1.53004 * 109.46243 * 65.83000 * 23 16 15 26 26 H 1.09003 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46876 * 299.99914 * 1 2 3 28 28 H 1.08991 * 109.46905 * 60.00191 * 1 2 3 29 29 H 1.09002 * 109.47530 * 120.00160 * 2 1 3 30 30 H 1.09000 * 109.47523 * 239.99727 * 2 1 3 31 31 H 1.09002 * 109.47280 * 210.00250 * 4 3 2 32 32 H 1.08996 * 109.47227 * 330.00755 * 4 3 2 33 33 H 0.97000 * 120.00219 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46707 * 305.19799 * 15 13 3 35 35 H 1.08995 * 109.46863 * 65.19435 * 15 13 3 36 36 H 1.08990 * 109.47214 * 52.07142 * 19 17 16 37 37 H 1.09001 * 109.46679 * 172.07435 * 19 17 16 38 38 H 1.08994 * 109.46540 * 292.07172 * 19 17 16 39 39 H 1.08997 * 109.50415 * 299.23166 * 20 17 16 40 40 H 1.08997 * 109.53548 * 179.13935 * 20 17 16 41 41 H 1.09003 * 109.52536 * 182.44127 * 21 20 17 42 42 H 1.08993 * 109.57469 * 62.28152 * 21 20 17 43 43 H 1.09003 * 109.50260 * 297.71167 * 22 21 20 44 44 H 1.08994 * 109.50319 * 177.60018 * 22 21 20 45 45 H 1.08997 * 109.47012 * 60.00748 * 25 23 16 46 46 H 1.09005 * 109.47237 * 180.02562 * 25 23 16 47 47 H 1.08996 * 109.46994 * 299.99826 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3426 1.2302 1.0962 7 6 4.1491 2.3896 2.8779 8 7 3.3491 3.1257 3.6181 9 14 5.9136 2.0967 3.4168 10 1 6.7847 3.1627 2.8602 11 1 5.9885 2.1202 4.8998 12 1 6.3701 0.7742 2.9190 13 6 2.2430 2.0164 -1.1672 14 8 2.6469 3.1601 -1.1672 15 6 1.9923 1.3059 -2.4723 16 7 2.4271 2.1595 -3.5860 17 6 1.8244 1.7212 -4.8513 18 1 2.2057 0.7340 -5.1125 19 6 0.3037 1.6554 -4.6959 20 6 2.1812 2.7151 -5.9590 21 6 3.7041 2.7926 -6.0974 22 6 4.3105 3.2041 -4.7530 23 6 3.8920 2.1962 -3.6802 24 1 4.3104 2.4941 -2.7188 25 6 4.4136 0.8074 -4.0547 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 2.0955 3.1410 1.1384 32 1 1.5818 1.6877 2.0284 33 1 3.6750 3.5156 4.4443 34 1 2.5528 0.3713 -2.4906 35 1 0.9279 1.0932 -2.5716 36 1 -0.0623 2.6021 -4.2989 37 1 -0.1530 1.4680 -5.6677 38 1 0.0432 0.8490 -4.0104 39 1 1.7881 3.6995 -5.7051 40 1 1.7467 2.3819 -6.9015 41 1 3.9639 3.5315 -6.8556 42 1 4.0943 1.8179 -6.3899 43 1 3.9510 4.1963 -4.4801 44 1 5.3974 3.2197 -4.8335 45 1 3.9951 0.5091 -5.0159 46 1 5.5011 0.8343 -4.1243 47 1 4.1165 0.0894 -3.2904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108863965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:45 Heat of formation + Delta-G solvation = -37.114185 kcal Electronic energy + Delta-G solvation = -24133.935269 eV Core-core repulsion = 20930.491762 eV Total energy + Delta-G solvation = -3203.443507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11940 -38.37908 -35.14439 -33.66108 -33.06118 -32.67541 -30.03575 -28.85364 -27.56072 -26.55038 -25.92148 -23.09193 -22.86758 -22.02235 -21.19232 -18.66553 -17.99329 -16.54181 -16.31296 -15.94495 -15.69835 -15.08442 -14.80236 -14.39262 -14.24410 -13.67571 -13.52543 -13.26119 -13.01983 -12.89356 -12.46425 -12.37064 -12.31803 -12.07991 -11.94865 -11.75987 -11.55457 -11.53115 -11.34193 -11.14334 -10.86559 -10.77940 -10.68581 -10.52724 -10.49692 -10.15288 -10.07474 -9.99281 -9.57456 -8.76994 -8.39393 -7.92603 -7.55262 -6.00090 -4.04513 3.33013 3.38934 3.40480 3.58468 3.72722 4.27997 4.48843 4.75998 4.81831 4.88683 5.08590 5.22621 5.27913 5.30039 5.34478 5.39637 5.41615 5.44930 5.52690 5.55822 5.59224 5.68135 5.74879 5.76629 5.86767 5.88015 5.93562 6.03277 6.06838 6.08329 6.13255 6.18852 6.27075 6.27291 6.37735 6.51767 6.58455 7.08228 7.29213 7.37822 7.52883 7.65127 7.97499 8.29456 8.55177 8.96490 9.26410 9.60785 11.07858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.005133 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.141250 B = 5453.258992 C = 6332.762479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.026 3.974 16 N -0.505 5.505 17 C 0.078 3.922 18 H 0.041 0.959 19 C -0.151 4.151 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.108 4.108 23 C 0.081 3.919 24 H 0.095 0.905 25 C -0.189 4.189 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -7.023 -17.748 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.292 3.708 14 O -0.397 6.397 15 C -0.104 4.104 16 N -0.229 5.229 17 C -0.030 4.030 18 H 0.059 0.941 19 C -0.208 4.208 20 C -0.147 4.147 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.027 4.027 24 H 0.113 0.887 25 C -0.248 4.248 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.141 -5.807 -17.462 18.862 hybrid contribution 1.237 -1.136 0.354 1.717 sum -2.904 -6.944 -17.108 18.691 Atomic orbital electron populations 1.22222 0.96925 1.01246 1.02318 1.21377 0.93429 0.84540 1.02377 1.48261 1.64481 1.13083 1.07740 1.19216 0.96047 0.93646 0.78202 1.21435 0.96996 1.31672 1.06106 0.92643 1.24925 0.97704 0.95013 0.96437 1.69934 1.35566 1.33575 1.14355 0.86533 0.84978 0.78564 0.77532 1.20579 1.21184 1.20014 1.20181 0.78849 0.87138 0.84644 1.90658 1.44554 1.17664 1.86857 1.22239 1.02144 0.94965 0.91100 1.61758 1.07819 1.51387 1.01975 1.21630 0.94601 0.96727 0.90072 0.94074 1.21962 0.94785 1.02650 1.01404 1.21595 0.95952 1.00248 0.96871 1.21616 0.95669 1.01078 0.97545 1.21543 0.99555 0.99774 0.93710 1.21715 0.86888 0.93641 1.00490 0.88651 1.22533 1.01816 0.99074 1.01374 0.92319 0.92011 0.93149 0.90115 0.92118 0.93955 0.95221 0.92790 0.92393 0.88269 0.91401 0.92297 0.92663 0.90984 0.91996 0.92187 0.92302 0.90845 0.91876 0.92291 0.92092 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.95 -4.05 -0.02 1.72 16 3 N -0.60 -12.87 2.46 -175.06 -0.43 -13.30 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.55 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.51 10.73 7.27 -10.99 -0.08 10.65 16 14 O -0.52 -13.42 14.88 5.55 0.08 -13.34 16 15 C 0.03 0.41 3.88 -4.98 -0.02 0.39 16 16 N -0.51 -7.66 4.00 -220.19 -0.88 -8.54 16 17 C 0.08 0.92 2.15 -67.72 -0.15 0.77 16 18 H 0.04 0.47 6.19 -51.93 -0.32 0.14 16 19 C -0.15 -1.58 8.57 37.16 0.32 -1.26 16 20 C -0.11 -1.16 5.37 -26.65 -0.14 -1.30 16 21 C -0.12 -1.28 5.69 -26.61 -0.15 -1.43 16 22 C -0.11 -1.40 5.61 -26.65 -0.15 -1.55 16 23 C 0.08 1.22 2.67 -67.73 -0.18 1.04 16 24 H 0.10 1.82 6.73 -51.93 -0.35 1.47 16 25 C -0.19 -2.39 8.21 37.16 0.31 -2.08 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.83 6.30 -51.93 -0.33 0.51 16 31 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 0.84 4.94 -51.93 -0.26 0.59 16 35 H 0.10 1.37 4.72 -51.93 -0.24 1.13 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 38 H 0.05 0.55 6.42 -51.93 -0.33 0.22 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.66 4.80 -51.93 -0.25 0.41 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.72 6.30 -51.93 -0.33 0.39 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.59 352.51 -8.66 -41.25 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.13 Total: -0.23 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -0.34 Total: -2.05 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.57 Total: -48.01 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.59 -8.66 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108863965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.138 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds