Wall clock time and date at job start Tue Mar 31 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46850 * 2 1 4 4 C 1.46498 * 120.00172 * 90.00173 * 3 2 1 5 5 C 1.50702 * 109.47263 * 89.99492 * 4 3 2 6 6 H 1.08008 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00286 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99840 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00131 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46970 * 89.99582 * 9 7 5 11 11 H 1.48500 * 109.47294 * 209.99919 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00058 * 9 7 5 13 13 C 1.34780 * 120.00172 * 270.00061 * 3 2 1 14 14 O 1.21276 * 120.00346 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99827 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47320 * 180.02562 * 15 13 3 17 17 C 1.46853 * 110.99504 * 288.33142 * 16 15 13 18 18 H 1.08998 * 109.46534 * 54.14187 * 17 16 15 19 19 C 1.53002 * 109.45976 * 294.17522 * 17 16 15 20 20 C 1.53038 * 109.51943 * 174.15831 * 17 16 15 21 21 C 1.53128 * 109.27691 * 59.18083 * 20 17 16 22 22 C 1.53124 * 109.15787 * 302.34225 * 21 20 17 23 23 C 1.46847 * 111.00019 * 164.12278 * 16 15 13 24 24 H 1.08997 * 109.46384 * 65.82113 * 23 16 15 25 25 C 1.52997 * 109.45950 * 305.84994 * 23 16 15 26 26 H 1.08989 * 109.47188 * 59.99893 * 1 2 3 27 27 H 1.08998 * 109.46629 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46447 * 299.99675 * 1 2 3 29 29 H 1.08999 * 109.46994 * 120.00126 * 2 1 3 30 30 H 1.08994 * 109.47148 * 240.00086 * 2 1 3 31 31 H 1.09001 * 109.47471 * 209.99870 * 4 3 2 32 32 H 1.09005 * 109.47218 * 330.00341 * 4 3 2 33 33 H 0.97003 * 119.99780 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47085 * 299.99730 * 15 13 3 35 35 H 1.09000 * 109.47146 * 59.99417 * 15 13 3 36 36 H 1.08994 * 109.47543 * 60.00198 * 19 17 16 37 37 H 1.09001 * 109.46877 * 180.02562 * 19 17 16 38 38 H 1.09004 * 109.46964 * 299.99824 * 19 17 16 39 39 H 1.08995 * 109.50201 * 299.24080 * 20 17 16 40 40 H 1.09004 * 109.50060 * 179.11369 * 20 17 16 41 41 H 1.08998 * 109.51707 * 182.44067 * 21 20 17 42 42 H 1.08996 * 109.52028 * 62.24595 * 21 20 17 43 43 H 1.09001 * 109.50212 * 297.71227 * 22 21 20 44 44 H 1.08999 * 109.49657 * 177.59836 * 22 21 20 45 45 H 1.08999 * 109.47461 * 67.42553 * 25 23 16 46 46 H 1.09007 * 109.46992 * 187.42242 * 25 23 16 47 47 H 1.08997 * 109.47501 * 307.42514 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3429 1.2309 1.0958 7 6 4.1494 2.3905 2.8774 8 7 5.3917 2.1842 3.2568 9 14 3.0132 3.4361 3.9287 10 1 2.3084 2.5701 4.9076 11 1 3.8106 4.4569 4.6548 12 1 2.0174 4.1125 3.0592 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5889 17 6 1.3070 3.2721 -3.7086 18 1 1.2089 3.7874 -2.7532 19 6 -0.0406 2.6622 -4.0995 20 6 1.7464 4.2693 -4.7831 21 6 1.9023 3.5371 -6.1189 22 6 2.9163 2.4016 -5.9542 23 6 2.4430 1.4585 -4.8458 24 1 1.4776 1.0326 -5.1189 25 6 3.4634 0.3331 -4.6639 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0955 3.1411 1.1384 32 1 1.5818 1.6877 2.0284 33 1 5.7180 2.5753 4.0823 34 1 2.6212 0.4187 -2.5303 35 1 0.9432 1.0125 -2.5298 36 1 -0.3541 1.9526 -3.3338 37 1 -0.7852 3.4533 -4.1888 38 1 0.0573 2.1464 -5.0547 39 1 2.6998 4.7143 -4.4985 40 1 0.9941 5.0518 -4.8828 41 1 2.2569 4.2349 -6.8775 42 1 0.9401 3.1251 -6.4229 43 1 3.8882 2.8173 -5.6881 44 1 2.9999 1.8498 -6.8905 45 1 3.0663 -0.4090 -3.9713 46 1 3.6606 -0.1377 -5.6270 47 1 4.3903 0.7441 -4.2638 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108863967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:47 Heat of formation + Delta-G solvation = -32.554976 kcal Electronic energy + Delta-G solvation = -24144.332931 eV Core-core repulsion = 20941.087127 eV Total energy + Delta-G solvation = -3203.245805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19352 -38.49025 -35.28547 -33.69784 -33.08301 -32.59871 -30.31517 -28.98871 -27.87723 -26.57391 -26.15614 -22.97014 -22.89462 -21.91904 -21.15619 -18.67389 -18.09006 -16.86836 -16.56264 -15.89642 -15.77455 -15.21020 -14.82938 -14.42871 -14.05215 -13.97678 -13.47621 -13.42247 -13.02482 -12.83036 -12.66443 -12.46413 -12.38699 -12.14657 -12.07837 -11.80101 -11.67912 -11.58804 -11.49908 -11.39428 -10.94555 -10.81958 -10.70387 -10.56094 -10.46613 -10.18357 -10.09407 -9.99142 -9.47779 -8.86614 -8.54718 -7.99541 -7.62089 -6.04033 -4.01996 3.29451 3.37606 3.42400 3.46455 3.65261 4.18934 4.43766 4.73583 4.79986 4.85211 5.01767 5.15279 5.22064 5.24742 5.30294 5.37951 5.38230 5.42166 5.43910 5.49379 5.56670 5.59775 5.69851 5.75445 5.79959 5.85267 5.91766 5.98403 5.99834 6.04020 6.07130 6.16333 6.19110 6.26691 6.32958 6.40264 6.54009 6.72071 7.02019 7.21473 7.34131 7.45449 7.67183 8.36184 8.53128 8.99753 9.13400 9.56909 11.09573 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.004757 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.324883 B = 5884.069191 C = 6073.555726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.510 3.490 14 O -0.521 6.521 15 C 0.028 3.972 16 N -0.506 5.506 17 C 0.080 3.920 18 H 0.097 0.903 19 C -0.190 4.190 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.110 4.110 23 C 0.079 3.921 24 H 0.041 0.959 25 C -0.152 4.152 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 -3.950 -17.192 20.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.296 3.704 14 O -0.397 6.397 15 C -0.102 4.102 16 N -0.230 5.230 17 C -0.029 4.029 18 H 0.115 0.885 19 C -0.248 4.248 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.029 4.029 24 H 0.059 0.941 25 C -0.209 4.209 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.564 -3.059 -16.933 20.192 hybrid contribution -1.246 -0.034 0.614 1.389 sum -11.810 -3.093 -16.320 20.381 Atomic orbital electron populations 1.22237 0.96978 1.01457 1.02086 1.21407 0.93220 0.84171 1.02940 1.47941 1.64792 1.13270 1.07029 1.19600 0.96995 0.93555 0.80089 1.21350 0.95431 1.32612 1.06969 0.90786 1.24854 0.94990 0.95797 0.97391 1.69903 1.15175 1.45129 1.23541 0.86873 0.81328 0.80913 0.80779 1.20188 1.20990 1.18897 1.20198 0.78450 0.87118 0.84647 1.90644 1.44260 1.17968 1.86813 1.22197 1.00652 0.96628 0.90766 1.61756 1.47237 1.11704 1.02284 1.21754 0.88071 0.92592 1.00437 0.88514 1.22543 0.99131 1.01687 1.01462 1.21547 1.02145 0.97096 0.93817 1.21619 0.99068 0.97678 0.97540 1.21605 0.99911 0.96324 0.96904 1.21628 0.97610 0.93677 0.90006 0.94092 1.21972 1.00123 0.97397 1.01451 0.93216 0.92059 0.92223 0.89778 0.91677 0.94282 0.95932 0.92648 0.88043 0.92345 0.92840 0.92190 0.92209 0.90796 0.91954 0.92155 0.92337 0.90890 0.91929 0.92624 0.92255 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 5 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 6 H 0.07 2.37 8.06 -52.48 -0.42 1.95 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 9 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.51 10.53 7.36 -10.98 -0.08 10.45 16 14 O -0.52 -13.01 14.41 5.56 0.08 -12.93 16 15 C 0.03 0.43 3.70 -4.98 -0.02 0.42 16 16 N -0.51 -7.53 4.07 -220.18 -0.90 -8.42 16 17 C 0.08 1.13 2.63 -67.72 -0.18 0.95 16 18 H 0.10 1.69 6.33 -51.93 -0.33 1.36 16 19 C -0.19 -2.16 8.21 37.16 0.30 -1.86 16 20 C -0.11 -1.34 5.61 -26.65 -0.15 -1.49 16 21 C -0.12 -1.24 5.70 -26.60 -0.15 -1.39 16 22 C -0.11 -1.17 5.37 -26.65 -0.14 -1.31 16 23 C 0.08 0.93 2.15 -67.72 -0.15 0.78 16 24 H 0.04 0.45 6.19 -51.93 -0.32 0.13 16 25 C -0.15 -1.67 8.57 37.16 0.32 -1.35 16 26 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 31 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 32 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.10 1.45 4.81 -51.93 -0.25 1.20 16 35 H 0.06 0.78 5.07 -51.93 -0.26 0.52 16 36 H 0.05 0.62 6.33 -51.93 -0.33 0.29 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.62 4.80 -51.93 -0.25 0.37 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -33.67 348.22 -8.33 -42.00 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -8.09 Total: 0.17 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.35 Total: -3.15 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.55 Total: -48.52 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.67 -8.33 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108863967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.444 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds