Wall clock time and date at job start Tue Mar 31 2020 05:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46499 * 119.99936 * 90.00137 * 3 2 1 5 5 C 1.50703 * 109.47126 * 89.99796 * 4 3 2 6 6 H 1.08002 * 119.99820 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46767 * 89.99886 * 9 7 5 11 11 H 1.48493 * 109.47240 * 210.00027 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99973 * 9 7 5 13 13 C 1.34773 * 119.99969 * 269.72101 * 3 2 1 14 14 O 1.21283 * 120.00092 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00430 * 0.02562 * 13 3 2 16 16 N 1.46891 * 109.47259 * 179.97438 * 15 13 3 17 17 C 1.46842 * 111.00529 * 66.04610 * 16 15 13 18 18 C 1.53038 * 109.52674 * 174.16283 * 17 16 15 19 19 C 1.53113 * 109.27870 * 59.17649 * 18 17 16 20 20 C 1.53119 * 109.16041 * 302.34480 * 19 18 17 21 21 C 1.53005 * 109.50349 * 177.59961 * 20 19 18 22 22 C 1.52998 * 109.50685 * 297.71646 * 20 19 18 23 23 C 1.46848 * 110.99893 * 301.82809 * 16 15 13 24 24 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 26 26 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 27 27 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 28 28 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 29 29 H 1.08994 * 109.47173 * 210.00167 * 4 3 2 30 30 H 1.09005 * 109.47077 * 330.00338 * 4 3 2 31 31 H 0.96995 * 119.99689 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.46564 * 299.99895 * 15 13 3 33 33 H 1.09001 * 109.47030 * 59.99569 * 15 13 3 34 34 H 1.09000 * 109.45925 * 294.17510 * 17 16 15 35 35 H 1.08995 * 109.46228 * 54.15127 * 17 16 15 36 36 H 1.09001 * 109.50092 * 179.11950 * 18 17 16 37 37 H 1.08995 * 109.49926 * 299.19230 * 18 17 16 38 38 H 1.08998 * 109.52838 * 62.25416 * 19 18 17 39 39 H 1.09005 * 109.51983 * 182.44769 * 19 18 17 40 40 H 1.08989 * 109.47284 * 60.00103 * 21 20 19 41 41 H 1.09005 * 109.47028 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.47099 * 300.00035 * 21 20 19 43 43 H 1.08999 * 109.47208 * 59.99918 * 22 20 19 44 44 H 1.08999 * 109.47528 * 179.97438 * 22 20 19 45 45 H 1.09005 * 109.46842 * 300.00179 * 22 20 19 46 46 H 1.08995 * 109.46717 * 305.86352 * 23 16 15 47 47 H 1.09007 * 109.45607 * 65.83036 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2302 1.0961 7 6 4.1491 2.3896 2.8780 8 7 3.3491 3.1257 3.6181 9 14 5.9131 2.0955 3.4176 10 1 6.7852 3.1608 2.8610 11 1 5.9877 2.1193 4.9005 12 1 6.3689 0.7726 2.9203 13 6 2.2483 2.0147 -1.1672 14 8 2.6530 3.1580 -1.1672 15 6 2.0026 1.3025 -2.4723 16 7 2.3254 2.2008 -3.5887 17 6 3.7617 2.5045 -3.6216 18 6 4.0835 3.3203 -4.8758 19 6 3.2690 4.6167 -4.8583 20 6 1.7791 4.2731 -4.7753 21 6 0.9608 5.5635 -4.6971 22 6 1.3675 3.4809 -6.0178 23 6 1.5241 3.4297 -3.5240 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 2.0955 3.1410 1.1384 30 1 1.5817 1.6877 2.0284 31 1 3.6750 3.5155 4.4444 32 1 2.6328 0.4146 -2.5259 33 1 0.9548 1.0085 -2.5342 34 1 4.0317 3.0790 -2.7355 35 1 4.3293 1.5742 -3.6381 36 1 5.1470 3.5589 -4.8917 37 1 3.8273 2.7407 -5.7625 38 1 3.5538 5.2144 -3.9924 39 1 3.4623 5.1806 -5.7709 40 1 1.1455 6.1653 -5.5868 41 1 -0.0996 5.3183 -4.6375 42 1 1.2536 6.1262 -3.8106 43 1 1.9498 2.5610 -6.0716 44 1 0.3071 3.2361 -5.9579 45 1 1.5527 4.0807 -6.9089 46 1 0.4666 3.1713 -3.4694 47 1 1.8047 3.9999 -2.6383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112702039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:42 Heat of formation + Delta-G solvation = -44.355284 kcal Electronic energy + Delta-G solvation = -24073.341893 eV Core-core repulsion = 20869.584389 eV Total energy + Delta-G solvation = -3203.757505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12723 -38.36857 -35.47812 -34.32200 -32.80703 -31.90350 -30.09905 -28.29453 -27.12942 -26.45568 -26.16237 -23.39782 -22.99244 -22.14498 -21.14124 -18.46895 -18.18216 -16.56627 -16.28995 -15.94233 -15.18059 -14.88526 -14.65351 -14.35251 -14.20845 -14.10321 -13.55375 -13.32657 -13.06794 -12.83948 -12.59636 -12.18716 -12.08124 -11.98718 -11.82519 -11.70921 -11.47892 -11.31142 -11.22139 -11.05536 -10.91786 -10.68795 -10.58269 -10.54109 -10.34578 -10.14338 -10.04027 -9.97219 -9.63228 -9.51617 -8.45003 -7.70502 -7.57519 -6.05843 -4.10615 3.29401 3.33900 3.35955 3.40627 3.96710 4.17491 4.43366 4.81661 4.96301 5.01195 5.13519 5.27678 5.28952 5.36131 5.46464 5.54288 5.59608 5.64072 5.67225 5.72350 5.76420 5.79401 5.80814 5.94364 6.02306 6.03593 6.06905 6.07167 6.19569 6.22077 6.25057 6.31697 6.44801 6.47790 6.51685 6.52390 6.71361 7.02979 7.26269 7.34334 7.43788 7.55338 7.90568 8.22471 8.42456 8.88704 9.08258 9.54648 11.02176 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.004929 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.699135 B = 5678.778635 C = 6330.881915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.474 3.526 14 O -0.539 6.539 15 C 0.033 3.967 16 N -0.512 5.512 17 C 0.040 3.960 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.060 4.060 21 C -0.140 4.140 22 C -0.131 4.131 23 C 0.044 3.956 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.042 0.958 46 H 0.060 0.940 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -3.218 -16.098 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.260 3.740 14 O -0.418 6.418 15 C -0.099 4.099 16 N -0.235 5.235 17 C -0.088 4.088 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.060 4.060 21 C -0.198 4.198 22 C -0.189 4.189 23 C -0.083 4.083 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.905 -2.757 -16.346 17.287 hybrid contribution 1.117 0.137 1.302 1.721 sum -3.788 -2.620 -15.044 15.733 Atomic orbital electron populations 1.22208 0.96767 1.01425 1.02254 1.21416 0.93525 0.84252 1.02655 1.48424 1.63052 1.13237 1.08022 1.19238 0.96176 0.93567 0.78403 1.21415 0.96904 1.31817 1.06205 0.92612 1.24931 0.97791 0.94949 0.96393 1.69933 1.35608 1.33505 1.14351 0.86517 0.84819 0.78617 0.77579 1.20588 1.21131 1.19938 1.21666 0.78581 0.87504 0.86227 1.90555 1.46256 1.18196 1.86824 1.22323 1.03070 0.96902 0.87606 1.62412 1.06020 1.15734 1.39322 1.22246 0.88250 0.99617 0.98683 1.21564 0.98955 0.96266 0.98261 1.21614 0.94334 0.97289 1.01379 1.20538 0.95065 0.94788 0.95637 1.21825 0.99593 0.96824 1.01546 1.21793 1.00863 1.00395 0.95816 1.22463 0.96558 0.91016 0.98302 0.92136 0.92138 0.93075 0.91669 0.90048 0.94089 0.95216 0.92745 0.88628 0.88643 0.91588 0.91798 0.92075 0.91545 0.91925 0.92490 0.92874 0.92861 0.92582 0.91312 0.93442 0.93940 0.92149 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.67 5.94 -4.04 -0.02 1.64 16 3 N -0.60 -12.32 2.46 -175.05 -0.43 -12.75 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.52 -14.83 9.38 -34.44 -0.32 -15.15 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.47 9.52 7.09 -10.99 -0.08 9.44 16 14 O -0.54 -12.85 11.21 5.55 0.06 -12.79 16 15 C 0.03 0.49 4.41 -4.98 -0.02 0.47 16 16 N -0.51 -7.65 4.14 -236.12 -0.98 -8.63 16 17 C 0.04 0.61 5.09 -3.84 -0.02 0.59 16 18 C -0.11 -1.45 5.74 -26.65 -0.15 -1.60 16 19 C -0.11 -1.40 4.79 -26.61 -0.13 -1.53 16 20 C -0.06 -0.76 0.77 -154.43 -0.12 -0.88 16 21 C -0.14 -1.64 8.48 37.16 0.32 -1.32 16 22 C -0.13 -1.48 8.04 37.16 0.30 -1.19 16 23 C 0.04 0.67 3.69 -3.83 -0.01 0.66 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.64 7.26 -51.92 -0.38 0.27 16 27 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.04 1.21 7.43 -51.93 -0.39 0.82 16 30 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.10 1.31 7.32 -51.92 -0.38 0.93 16 33 H 0.10 1.26 7.22 -51.93 -0.37 0.89 16 34 H 0.07 1.27 6.00 -51.93 -0.31 0.96 16 35 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.79 6.59 -51.93 -0.34 0.45 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.54 8.14 -51.94 -0.42 0.12 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 47 H 0.08 1.53 5.36 -51.93 -0.28 1.25 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -31.27 355.71 -8.83 -40.10 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.55 Total: 0.44 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.01 Total: -2.70 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.67 Total: -47.30 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.06 Total: -12.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.27 -8.83 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112702039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.259 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds