Wall clock time and date at job start Tue Mar 31 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99876 * 2 1 4 4 C 1.46898 * 111.00234 * 123.94805 * 2 1 3 5 5 C 1.53006 * 109.46778 * 66.04644 * 4 2 1 6 6 C 1.52998 * 109.47087 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47312 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00275 * 270.00537 * 7 6 5 9 9 C 1.50706 * 109.46824 * 269.99674 * 8 7 6 10 10 H 1.07999 * 119.99764 * 0.02562 * 9 8 7 11 11 C 1.37866 * 119.99660 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00681 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99805 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47352 * 60.00179 * 13 11 9 15 15 H 1.48505 * 109.47283 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47040 * 300.00125 * 13 11 9 17 17 C 1.34777 * 119.99867 * 89.99887 * 7 6 5 18 18 O 1.21279 * 120.00166 * 0.02562 * 17 7 6 19 19 C 1.50706 * 120.00142 * 180.02562 * 17 7 6 20 20 C 1.52999 * 109.46957 * 180.02562 * 19 17 7 21 21 C 1.53006 * 109.46626 * 180.02562 * 20 19 17 22 22 C 1.53003 * 117.49663 * 243.74292 * 21 20 19 23 23 C 1.53002 * 117.49643 * 175.08260 * 21 20 19 24 24 H 1.09000 * 109.46966 * 296.04578 * 1 2 3 25 25 H 1.08998 * 109.47139 * 56.05151 * 1 2 3 26 26 H 1.09000 * 109.46661 * 176.05081 * 1 2 3 27 27 H 1.09004 * 109.47497 * 183.95805 * 3 2 1 28 28 H 1.09003 * 109.47019 * 303.95307 * 3 2 1 29 29 H 1.09003 * 109.47666 * 63.95240 * 3 2 1 30 30 H 1.08994 * 109.47275 * 306.05256 * 4 2 1 31 31 H 1.09001 * 109.47532 * 186.04637 * 4 2 1 32 32 H 1.09002 * 109.46560 * 60.00554 * 5 4 2 33 33 H 1.08996 * 109.47172 * 299.99783 * 5 4 2 34 34 H 1.09002 * 109.47223 * 59.99963 * 6 5 4 35 35 H 1.09004 * 109.47223 * 300.00602 * 6 5 4 36 36 H 1.08994 * 109.46914 * 29.99478 * 8 7 6 37 37 H 1.08996 * 109.47264 * 149.99614 * 8 7 6 38 38 H 0.97002 * 120.00979 * 179.97438 * 12 11 9 39 39 H 1.08993 * 109.46700 * 59.99973 * 19 17 7 40 40 H 1.09000 * 109.46974 * 300.00347 * 19 17 7 41 41 H 1.08993 * 109.47839 * 60.00178 * 20 19 17 42 42 H 1.09000 * 109.47160 * 299.99740 * 20 19 17 43 43 H 1.09002 * 115.55153 * 29.41498 * 21 20 19 44 44 H 1.08998 * 117.49856 * 0.02562 * 22 21 20 45 45 H 1.09000 * 117.49861 * 145.02337 * 22 21 20 46 46 H 1.08993 * 117.50251 * 214.97577 * 23 21 20 47 47 H 1.09003 * 117.49715 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7658 1.1376 5 6 1.6315 -2.2425 0.9705 6 6 2.1804 -3.0404 2.1550 7 7 1.8324 -4.4543 1.9946 8 6 0.5759 -4.9667 2.5470 9 6 0.8051 -5.4434 3.9582 10 1 1.7882 -5.3714 4.3995 11 6 -0.2405 -5.9704 4.6861 12 7 -1.4377 -6.0576 4.1489 13 14 0.0433 -6.5606 6.4355 14 1 0.5253 -5.4290 7.2677 15 1 -1.2305 -7.0790 6.9959 16 1 1.0606 -7.6424 6.4340 17 6 2.6681 -5.2838 1.3389 18 8 3.7084 -4.8597 0.8819 19 6 2.3099 -6.7383 1.1734 20 6 3.4198 -7.4519 0.3989 21 6 3.0558 -8.9284 0.2304 22 6 3.9645 -9.9609 0.9006 23 6 3.9879 -9.7931 -0.6208 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7044 1.8725 0.9233 30 1 1.5611 -0.3871 2.0628 31 1 3.0798 -0.6610 1.1757 32 1 2.0659 -2.6213 0.0453 33 1 0.5472 -2.3474 0.9325 34 1 1.7464 -2.6617 3.0804 35 1 3.2647 -2.9353 2.1926 36 1 -0.1708 -4.1728 2.5484 37 1 0.2223 -5.7971 1.9359 38 1 -2.1733 -6.4287 4.6608 39 1 1.3720 -6.8212 0.6243 40 1 2.1982 -7.1989 2.1550 41 1 4.3575 -7.3689 0.9483 42 1 3.5318 -6.9914 -0.5826 43 1 1.9889 -9.1479 0.1898 44 1 4.8213 -9.5883 1.4619 45 1 3.4954 -10.8599 1.3005 46 1 3.5343 -10.5817 -1.2210 47 1 4.8606 -9.3101 -1.0603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115345797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:28 Heat of formation + Delta-G solvation = -27.898806 kcal Electronic energy + Delta-G solvation = -22628.226703 eV Core-core repulsion = 19425.182805 eV Total energy + Delta-G solvation = -3203.043898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.20721 -37.64261 -37.19752 -35.11486 -32.99520 -31.96416 -31.02096 -27.60684 -27.35648 -26.23646 -24.24945 -22.97501 -22.25100 -22.02372 -20.60561 -20.08055 -18.14309 -16.61640 -16.25340 -15.75100 -15.41277 -15.34343 -14.93826 -14.71396 -14.46657 -14.42520 -13.97146 -13.56472 -13.08714 -12.58421 -12.38824 -12.28756 -12.07651 -11.75814 -11.75130 -11.59314 -11.43409 -11.40894 -11.22572 -11.06973 -10.99959 -10.87218 -10.83440 -10.63757 -10.26793 -10.08852 -10.02537 -9.74512 -9.61177 -8.94403 -8.55369 -8.32874 -7.67901 -6.18720 -4.26228 3.23542 3.28590 3.30953 3.49929 3.83769 3.98477 4.15332 4.33444 4.89422 5.09917 5.11685 5.12541 5.14429 5.17002 5.28896 5.38504 5.43735 5.57219 5.63752 5.68465 5.74367 5.74780 5.78960 5.79694 5.88510 5.92819 5.93637 6.03691 6.09195 6.19832 6.23740 6.24832 6.36515 6.53843 6.61753 6.65144 6.73469 6.83589 7.05619 7.08740 7.19788 7.58054 7.76464 8.06207 8.39307 8.79801 9.09199 9.42067 10.87789 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009267 B = 0.005278 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.802136 B = 5303.711108 C = 7741.082014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.596 5.596 8 C 0.238 3.762 9 C -0.538 4.538 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.516 3.484 18 O -0.578 6.578 19 C -0.132 4.132 20 C -0.070 4.070 21 C -0.147 4.147 22 C -0.182 4.182 23 C -0.185 4.185 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 3.768 -7.082 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.326 5.326 8 C 0.118 3.882 9 C -0.576 4.576 10 H 0.078 0.922 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.305 3.695 18 O -0.460 6.460 19 C -0.171 4.171 20 C -0.108 4.108 21 C -0.166 4.166 22 C -0.219 4.219 23 C -0.222 4.222 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.028 3.707 -7.689 9.906 hybrid contribution -0.485 0.044 1.907 1.968 sum 4.542 3.751 -5.782 8.254 Atomic orbital electron populations 1.22440 0.87412 1.02780 1.00077 1.61980 1.08105 1.13380 1.43777 1.22366 1.00719 0.89092 1.00158 1.22083 1.00022 0.93991 0.90844 1.21939 1.01466 0.93192 1.00083 1.21169 1.00343 0.81478 0.97225 1.48204 1.22746 1.07865 1.53775 1.19409 0.79799 0.95213 0.93737 1.21468 0.96001 1.41748 0.98410 0.92192 1.24925 0.94895 0.95453 0.98438 1.69908 1.00523 1.45027 1.37545 0.86594 0.77524 0.79264 0.84320 1.20198 1.21156 1.20026 1.20575 0.83160 0.88466 0.77286 1.90577 1.25736 1.78383 1.51269 1.21585 0.99555 0.92576 1.03404 1.20909 0.98228 0.91144 1.00539 1.22398 0.97201 0.92875 1.04092 1.23025 1.02641 1.01242 0.94994 1.22950 1.02509 1.03117 0.93670 0.95669 0.91778 0.90735 0.91461 0.91645 0.95863 0.94727 0.90794 0.91117 0.91784 0.90792 0.91127 0.94838 0.94296 0.92485 0.89451 0.87873 0.91569 0.91466 0.87681 0.88890 0.89134 0.89220 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.06 0.56 0.82 16 2 N -0.55 -7.28 5.02 -251.26 -1.26 -8.54 16 3 C 0.03 0.27 9.57 60.06 0.57 0.84 16 4 C 0.06 0.82 4.96 -3.82 -0.02 0.81 16 5 C -0.13 -2.10 5.46 -26.73 -0.15 -2.24 16 6 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 7 N -0.60 -12.53 2.46 -175.06 -0.43 -12.96 16 8 C 0.24 5.58 4.97 -5.19 -0.03 5.55 16 9 C -0.54 -13.81 9.28 -34.44 -0.32 -14.13 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 13 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.52 10.80 7.67 -10.98 -0.08 10.71 16 18 O -0.58 -13.05 15.56 5.56 0.09 -12.97 16 19 C -0.13 -2.41 4.21 -27.88 -0.12 -2.53 16 20 C -0.07 -1.13 4.78 -26.73 -0.13 -1.26 16 21 C -0.15 -2.04 5.73 -90.61 -0.52 -2.56 16 22 C -0.18 -2.30 10.18 -26.69 -0.27 -2.57 16 23 C -0.19 -2.20 10.26 -26.69 -0.27 -2.48 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 34 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.07 1.33 7.42 -51.93 -0.39 0.94 16 36 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.04 0.94 6.44 -51.93 -0.33 0.60 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.09 1.53 7.40 -51.93 -0.38 1.15 16 40 H 0.10 2.02 8.00 -51.93 -0.42 1.60 16 41 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 42 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 43 H 0.11 1.43 8.08 -51.93 -0.42 1.01 16 44 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -28.35 380.44 -9.93 -38.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.88 Total: 3.78 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.89 Total: -5.16 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.95 Total: -45.05 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.35 -9.93 -38.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115345797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.382 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds